Strain Fitness in Escherichia coli ECRC101 around MCAODC_16980

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_16975 and MCAODC_16980 are separated by 341 nucleotidesMCAODC_16980 and rri1 overlap by 4 nucleotidesrri1 and gp18 are separated by 10 nucleotides MCAODC_16975: MCAODC_16975 - host specificity protein J, at 303,228 to 304,796 _16975 MCAODC_16980: MCAODC_16980 - tail assembly protein, at 305,138 to 305,719 _16980 MCAODC_16985: rri1 - phage tail protein, at 305,716 to 306,459 rri1 MCAODC_16990: gp18 - phage minor tail protein L, at 306,470 to 307,168 gp18 Position (kb) 305 306Strain fitness (log2 ratio) -2 -1 0 1 2at 305.025 kb on + strandat 305.139 kb on + strandat 305.139 kb on + strandat 305.139 kb on + strandat 305.633 kb on + strand, within MCAODC_16980at 306.075 kb on - strand, within rri1at 306.346 kb on - strand, within rri1at 306.361 kb on - strand, within rri1at 306.362 kb on + strand, within rri1at 306.362 kb on + strand, within rri1at 306.363 kb on - strand, within rri1at 306.363 kb on - strand, within rri1at 306.363 kb on - strand, within rri1at 306.363 kb on - strand, within rri1at 306.639 kb on + strand, within gp18at 306.639 kb on + strand, within gp18at 306.650 kb on - strand, within gp18at 306.650 kb on - strand, within gp18at 306.668 kb on - strand, within gp18

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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305,025 + +0.6
305,139 + -1.8
305,139 + +0.7
305,139 + -0.7
305,633 + MCAODC_16980 0.85 -0.9
306,075 - rri1 MCAODC_16985 0.48 -0.3
306,346 - rri1 MCAODC_16985 0.85 -1.9
306,361 - rri1 MCAODC_16985 0.87 +0.8
306,362 + rri1 MCAODC_16985 0.87 +0.1
306,362 + rri1 MCAODC_16985 0.87 +0.6
306,363 - rri1 MCAODC_16985 0.87 +0.3
306,363 - rri1 MCAODC_16985 0.87 -0.2
306,363 - rri1 MCAODC_16985 0.87 +0.0
306,363 - rri1 MCAODC_16985 0.87 +0.3
306,639 + gp18 MCAODC_16990 0.24 -1.6
306,639 + gp18 MCAODC_16990 0.24 +2.2
306,650 - gp18 MCAODC_16990 0.26 +0.7
306,650 - gp18 MCAODC_16990 0.26 -0.9
306,668 - gp18 MCAODC_16990 0.28 -0.7

Or see this region's nucleotide sequence