Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pspA and pspB are separated by 53 nucleotides pspB and pspC overlap by 1 nucleotides pspC and pspD are separated by 8 nucleotides pspD and pspE are separated by 74 nucleotides pspE and MCAODC_15885 are separated by 209 nucleotides MCAODC_15885 and ycjM overlap by 1 nucleotides
MCAODC_15860: pspA - phage shock protein PspA, at 65,886 to 66,554
pspA
MCAODC_15865: pspB - envelope stress response membrane protein PspB, at 66,608 to 66,832
pspB
MCAODC_15870: pspC - envelope stress response membrane protein PspC, at 66,832 to 67,191
pspC
MCAODC_15875: pspD - phage shock protein PspD, at 67,200 to 67,421
pspD
MCAODC_15880: pspE - thiosulfate sulfurtransferase PspE, at 67,496 to 67,810
pspE
MCAODC_15885: MCAODC_15885 - Alpha-amylase, at 68,020 to 68,394
_15885
MCAODC_15890: ycjM - Glucosylglycerate phosphorylase, at 68,394 to 69,698
ycjM
Position (kb) 67
68 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 66.407 kb on + strand, within pspA at 66.555 kb on + strand at 66.555 kb on + strand at 66.556 kb on - strand at 66.596 kb on + strand at 66.608 kb on - strand at 66.793 kb on + strand, within pspB at 66.843 kb on + strand at 66.916 kb on + strand, within pspC at 67.000 kb on + strand, within pspC at 67.000 kb on + strand, within pspC at 67.001 kb on - strand, within pspC at 67.141 kb on + strand, within pspC at 67.141 kb on + strand, within pspC at 67.142 kb on - strand, within pspC at 67.379 kb on - strand, within pspD at 67.456 kb on + strand at 67.459 kb on - strand at 67.481 kb on + strand at 67.622 kb on - strand, within pspE at 67.692 kb on - strand, within pspE at 67.692 kb on - strand, within pspE at 67.750 kb on + strand, within pspE at 67.750 kb on + strand, within pspE at 67.866 kb on - strand at 67.876 kb on - strand at 67.880 kb on + strand at 67.881 kb on - strand at 68.071 kb on - strand, within MCAODC_15885
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 66,407 + pspA MCAODC_15860 0.78 +0.2 66,555 + -0.3 66,555 + +0.8 66,556 - +0.4 66,596 + +1.0 66,608 - -1.1 66,793 + pspB MCAODC_15865 0.82 +0.5 66,843 + -0.3 66,916 + pspC MCAODC_15870 0.23 -3.2 67,000 + pspC MCAODC_15870 0.47 +0.5 67,000 + pspC MCAODC_15870 0.47 -2.1 67,001 - pspC MCAODC_15870 0.47 -0.8 67,141 + pspC MCAODC_15870 0.86 -1.5 67,141 + pspC MCAODC_15870 0.86 +1.2 67,142 - pspC MCAODC_15870 0.86 -0.9 67,379 - pspD MCAODC_15875 0.81 -3.4 67,456 + -0.1 67,459 - -2.0 67,481 + -0.1 67,622 - pspE MCAODC_15880 0.40 -0.3 67,692 - pspE MCAODC_15880 0.62 -1.2 67,692 - pspE MCAODC_15880 0.62 -0.9 67,750 + pspE MCAODC_15880 0.81 +2.3 67,750 + pspE MCAODC_15880 0.81 +0.0 67,866 - +1.8 67,876 - +1.6 67,880 + -0.0 67,881 - -0.5 68,071 - MCAODC_15885 0.14 +0.5
Or see this region's nucleotide sequence