Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trpD and trpE overlap by 1 nucleotides trpE and trpL are separated by 91 nucleotides trpL and yciV are separated by 137 nucleotides
MCAODC_15605: trpD - bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD, at 10,796 to 12,391
trpD
MCAODC_15610: trpE - anthranilate synthase component I, at 12,391 to 13,953
trpE
MCAODC_15615: trpL - trp operon leader peptide, at 14,045 to 14,089
trpL
MCAODC_15620: yciV - 5'-3' exoribonuclease, at 14,227 to 15,108
yciV
Position (kb) 12
13
14 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 11.410 kb on + strand, within trpD at 11.715 kb on - strand, within trpD at 11.978 kb on - strand, within trpD at 12.102 kb on + strand, within trpD at 12.103 kb on - strand, within trpD at 12.154 kb on + strand, within trpD at 12.154 kb on + strand, within trpD at 12.193 kb on + strand, within trpD at 12.193 kb on + strand, within trpD at 12.194 kb on - strand, within trpD at 12.194 kb on - strand, within trpD at 12.194 kb on - strand, within trpD at 12.273 kb on - strand at 12.313 kb on + strand at 12.349 kb on - strand at 12.353 kb on - strand at 12.365 kb on - strand at 12.392 kb on + strand at 12.392 kb on + strand at 12.392 kb on + strand at 12.426 kb on + strand at 12.590 kb on + strand, within trpE at 12.591 kb on - strand, within trpE at 12.595 kb on + strand, within trpE at 12.596 kb on - strand, within trpE at 12.658 kb on + strand, within trpE at 12.770 kb on + strand, within trpE at 12.770 kb on + strand, within trpE at 12.771 kb on - strand, within trpE at 12.886 kb on - strand, within trpE at 12.984 kb on - strand, within trpE at 13.013 kb on + strand, within trpE at 13.014 kb on - strand, within trpE at 13.079 kb on + strand, within trpE at 13.080 kb on - strand, within trpE at 13.109 kb on + strand, within trpE at 13.110 kb on - strand, within trpE at 13.113 kb on - strand, within trpE at 13.449 kb on + strand, within trpE at 13.500 kb on - strand, within trpE at 13.600 kb on + strand, within trpE at 13.600 kb on + strand, within trpE at 13.664 kb on - strand, within trpE at 13.790 kb on - strand, within trpE at 13.807 kb on + strand at 13.808 kb on - strand at 13.958 kb on - strand at 14.243 kb on - strand at 14.271 kb on + strand at 14.499 kb on + strand, within yciV at 14.499 kb on + strand, within yciV at 14.592 kb on + strand, within yciV at 14.593 kb on - strand, within yciV at 14.593 kb on - strand, within yciV at 14.593 kb on - strand, within yciV at 14.593 kb on - strand, within yciV at 14.594 kb on + strand, within yciV at 14.595 kb on - strand, within yciV at 14.765 kb on + strand, within yciV at 14.775 kb on + strand, within yciV at 14.775 kb on + strand, within yciV at 14.775 kb on + strand, within yciV at 14.813 kb on + strand, within yciV at 14.934 kb on + strand, within yciV
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 11,410 + trpD MCAODC_15605 0.38 -4.6 11,715 - trpD MCAODC_15605 0.58 -3.4 11,978 - trpD MCAODC_15605 0.74 -2.9 12,102 + trpD MCAODC_15605 0.82 -1.2 12,103 - trpD MCAODC_15605 0.82 -4.5 12,154 + trpD MCAODC_15605 0.85 -4.6 12,154 + trpD MCAODC_15605 0.85 -3.7 12,193 + trpD MCAODC_15605 0.88 -3.4 12,193 + trpD MCAODC_15605 0.88 -2.9 12,194 - trpD MCAODC_15605 0.88 -3.0 12,194 - trpD MCAODC_15605 0.88 -2.1 12,194 - trpD MCAODC_15605 0.88 -5.1 12,273 - -2.5 12,313 + -3.4 12,349 - -2.6 12,353 - -1.3 12,365 - -0.3 12,392 + -1.5 12,392 + -5.3 12,392 + -3.6 12,426 + -3.3 12,590 + trpE MCAODC_15610 0.13 -0.8 12,591 - trpE MCAODC_15610 0.13 -2.8 12,595 + trpE MCAODC_15610 0.13 -1.5 12,596 - trpE MCAODC_15610 0.13 -2.0 12,658 + trpE MCAODC_15610 0.17 -3.1 12,770 + trpE MCAODC_15610 0.24 -0.8 12,770 + trpE MCAODC_15610 0.24 -3.4 12,771 - trpE MCAODC_15610 0.24 -0.8 12,886 - trpE MCAODC_15610 0.32 -3.2 12,984 - trpE MCAODC_15610 0.38 -4.8 13,013 + trpE MCAODC_15610 0.40 -1.1 13,014 - trpE MCAODC_15610 0.40 -3.0 13,079 + trpE MCAODC_15610 0.44 -4.0 13,080 - trpE MCAODC_15610 0.44 -3.8 13,109 + trpE MCAODC_15610 0.46 -4.7 13,110 - trpE MCAODC_15610 0.46 -5.6 13,113 - trpE MCAODC_15610 0.46 -0.9 13,449 + trpE MCAODC_15610 0.68 -5.5 13,500 - trpE MCAODC_15610 0.71 -4.2 13,600 + trpE MCAODC_15610 0.77 -2.2 13,600 + trpE MCAODC_15610 0.77 -3.9 13,664 - trpE MCAODC_15610 0.81 -1.6 13,790 - trpE MCAODC_15610 0.90 -1.7 13,807 + -3.7 13,808 - -1.9 13,958 - -0.6 14,243 - -0.7 14,271 + +0.1 14,499 + yciV MCAODC_15620 0.31 -0.9 14,499 + yciV MCAODC_15620 0.31 -0.7 14,592 + yciV MCAODC_15620 0.41 +0.2 14,593 - yciV MCAODC_15620 0.41 +0.4 14,593 - yciV MCAODC_15620 0.41 -0.8 14,593 - yciV MCAODC_15620 0.41 -0.8 14,593 - yciV MCAODC_15620 0.41 +3.0 14,594 + yciV MCAODC_15620 0.42 -0.3 14,595 - yciV MCAODC_15620 0.42 +0.3 14,765 + yciV MCAODC_15620 0.61 +0.9 14,775 + yciV MCAODC_15620 0.62 -1.2 14,775 + yciV MCAODC_15620 0.62 +0.3 14,775 + yciV MCAODC_15620 0.62 +1.6 14,813 + yciV MCAODC_15620 0.66 -0.4 14,934 + yciV MCAODC_15620 0.80 +1.5
Or see this region's nucleotide sequence