Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_15035 and MCAODC_15040 are separated by 12 nucleotides MCAODC_15040 and yjdB are separated by 7 nucleotides yjdB and MCAODC_15050 are separated by 13 nucleotides MCAODC_15050 and MCAODC_15055 are separated by 26 nucleotides MCAODC_15055 and MCAODC_15060 are separated by 43 nucleotides
MCAODC_15035: MCAODC_15035 - phage tail protein, at 2,937,758 to 2,938,381
_15035
MCAODC_15040: MCAODC_15040 - phage tail protein, at 2,938,394 to 2,938,792
_15040
MCAODC_15045: yjdB - phage tail protein, at 2,938,800 to 2,939,552
yjdB
MCAODC_15050: MCAODC_15050 - phage minor tail protein G, at 2,939,566 to 2,939,988
_15050
MCAODC_15055: MCAODC_15055 - phage tail assembly protein T, at 2,940,015 to 2,940,323
_15055
MCAODC_15060: MCAODC_15060 - phage tail tape measure protein, at 2,940,367 to 2,943,012
_15060
Position (kb)
2938
2939
2940 Strain fitness (log2 ratio)
-1
0
1
2 at 2937.866 kb on - strand, within MCAODC_15035 at 2937.965 kb on + strand, within MCAODC_15035 at 2937.965 kb on + strand, within MCAODC_15035 at 2937.965 kb on + strand, within MCAODC_15035 at 2937.966 kb on - strand, within MCAODC_15035 at 2937.966 kb on - strand, within MCAODC_15035 at 2937.966 kb on - strand, within MCAODC_15035 at 2937.977 kb on + strand, within MCAODC_15035 at 2938.129 kb on + strand, within MCAODC_15035 at 2938.171 kb on + strand, within MCAODC_15035 at 2938.172 kb on - strand, within MCAODC_15035 at 2938.172 kb on - strand, within MCAODC_15035 at 2938.255 kb on + strand, within MCAODC_15035 at 2938.307 kb on + strand, within MCAODC_15035 at 2938.393 kb on + strand at 2938.394 kb on - strand at 2938.585 kb on + strand, within MCAODC_15040 at 2938.586 kb on - strand, within MCAODC_15040 at 2938.630 kb on + strand, within MCAODC_15040 at 2938.631 kb on - strand, within MCAODC_15040 at 2938.716 kb on - strand, within MCAODC_15040 at 2938.741 kb on + strand, within MCAODC_15040 at 2938.741 kb on + strand, within MCAODC_15040 at 2938.741 kb on + strand, within MCAODC_15040 at 2938.742 kb on - strand, within MCAODC_15040 at 2938.742 kb on - strand, within MCAODC_15040 at 2938.742 kb on - strand, within MCAODC_15040
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,937,866 - MCAODC_15035 0.17 +1.4 2,937,965 + MCAODC_15035 0.33 +0.1 2,937,965 + MCAODC_15035 0.33 +1.1 2,937,965 + MCAODC_15035 0.33 +0.0 2,937,966 - MCAODC_15035 0.33 -1.4 2,937,966 - MCAODC_15035 0.33 -1.2 2,937,966 - MCAODC_15035 0.33 +0.8 2,937,977 + MCAODC_15035 0.35 +0.4 2,938,129 + MCAODC_15035 0.59 +0.3 2,938,171 + MCAODC_15035 0.66 +0.1 2,938,172 - MCAODC_15035 0.66 +0.5 2,938,172 - MCAODC_15035 0.66 +0.0 2,938,255 + MCAODC_15035 0.80 -0.3 2,938,307 + MCAODC_15035 0.88 +1.2 2,938,393 + -1.0 2,938,394 - +1.8 2,938,585 + MCAODC_15040 0.48 -0.1 2,938,586 - MCAODC_15040 0.48 +0.9 2,938,630 + MCAODC_15040 0.59 -0.1 2,938,631 - MCAODC_15040 0.59 +0.2 2,938,716 - MCAODC_15040 0.81 +0.5 2,938,741 + MCAODC_15040 0.87 -1.4 2,938,741 + MCAODC_15040 0.87 -0.1 2,938,741 + MCAODC_15040 0.87 -0.1 2,938,742 - MCAODC_15040 0.87 +0.7 2,938,742 - MCAODC_15040 0.87 +0.5 2,938,742 - MCAODC_15040 0.87 +0.3
Or see this region's nucleotide sequence