Strain Fitness in Escherichia coli ECRC101 around MCAODC_15045

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_15035 and MCAODC_15040 are separated by 12 nucleotidesMCAODC_15040 and yjdB are separated by 7 nucleotidesyjdB and MCAODC_15050 are separated by 13 nucleotidesMCAODC_15050 and MCAODC_15055 are separated by 26 nucleotidesMCAODC_15055 and MCAODC_15060 are separated by 43 nucleotides MCAODC_15035: MCAODC_15035 - phage tail protein, at 2,937,758 to 2,938,381 _15035 MCAODC_15040: MCAODC_15040 - phage tail protein, at 2,938,394 to 2,938,792 _15040 MCAODC_15045: yjdB - phage tail protein, at 2,938,800 to 2,939,552 yjdB MCAODC_15050: MCAODC_15050 - phage minor tail protein G, at 2,939,566 to 2,939,988 _15050 MCAODC_15055: MCAODC_15055 - phage tail assembly protein T, at 2,940,015 to 2,940,323 _15055 MCAODC_15060: MCAODC_15060 - phage tail tape measure protein, at 2,940,367 to 2,943,012 _15060 Position (kb) 2938 2939 2940Strain fitness (log2 ratio) -1 0 1 2at 2937.866 kb on - strand, within MCAODC_15035at 2937.965 kb on + strand, within MCAODC_15035at 2937.965 kb on + strand, within MCAODC_15035at 2937.965 kb on + strand, within MCAODC_15035at 2937.966 kb on - strand, within MCAODC_15035at 2937.966 kb on - strand, within MCAODC_15035at 2937.966 kb on - strand, within MCAODC_15035at 2937.977 kb on + strand, within MCAODC_15035at 2938.129 kb on + strand, within MCAODC_15035at 2938.171 kb on + strand, within MCAODC_15035at 2938.172 kb on - strand, within MCAODC_15035at 2938.172 kb on - strand, within MCAODC_15035at 2938.255 kb on + strand, within MCAODC_15035at 2938.307 kb on + strand, within MCAODC_15035at 2938.393 kb on + strandat 2938.394 kb on - strandat 2938.585 kb on + strand, within MCAODC_15040at 2938.586 kb on - strand, within MCAODC_15040at 2938.630 kb on + strand, within MCAODC_15040at 2938.631 kb on - strand, within MCAODC_15040at 2938.716 kb on - strand, within MCAODC_15040at 2938.741 kb on + strand, within MCAODC_15040at 2938.741 kb on + strand, within MCAODC_15040at 2938.741 kb on + strand, within MCAODC_15040at 2938.742 kb on - strand, within MCAODC_15040at 2938.742 kb on - strand, within MCAODC_15040at 2938.742 kb on - strand, within MCAODC_15040

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,937,866 - MCAODC_15035 0.17 +1.4
2,937,965 + MCAODC_15035 0.33 +0.1
2,937,965 + MCAODC_15035 0.33 +1.1
2,937,965 + MCAODC_15035 0.33 +0.0
2,937,966 - MCAODC_15035 0.33 -1.4
2,937,966 - MCAODC_15035 0.33 -1.2
2,937,966 - MCAODC_15035 0.33 +0.8
2,937,977 + MCAODC_15035 0.35 +0.4
2,938,129 + MCAODC_15035 0.59 +0.3
2,938,171 + MCAODC_15035 0.66 +0.1
2,938,172 - MCAODC_15035 0.66 +0.5
2,938,172 - MCAODC_15035 0.66 +0.0
2,938,255 + MCAODC_15035 0.80 -0.3
2,938,307 + MCAODC_15035 0.88 +1.2
2,938,393 + -1.0
2,938,394 - +1.8
2,938,585 + MCAODC_15040 0.48 -0.1
2,938,586 - MCAODC_15040 0.48 +0.9
2,938,630 + MCAODC_15040 0.59 -0.1
2,938,631 - MCAODC_15040 0.59 +0.2
2,938,716 - MCAODC_15040 0.81 +0.5
2,938,741 + MCAODC_15040 0.87 -1.4
2,938,741 + MCAODC_15040 0.87 -0.1
2,938,741 + MCAODC_15040 0.87 -0.1
2,938,742 - MCAODC_15040 0.87 +0.7
2,938,742 - MCAODC_15040 0.87 +0.5
2,938,742 - MCAODC_15040 0.87 +0.3

Or see this region's nucleotide sequence