Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yejM and yejL are separated by 19 nucleotides yejL and yejK are separated by 181 nucleotides
MCAODC_14385: yejM - LPS biosynthesis-modulating metalloenzyme YejM, at 2,826,654 to 2,828,414
yejM
MCAODC_14390: yejL - UPF0352 protein YejL, at 2,828,434 to 2,828,661
yejL
MCAODC_14395: yejK - nucleoid-associated protein YejK, at 2,828,843 to 2,829,850
yejK
Position (kb)
2828
2829 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2827.464 kb on - strand, within yejM at 2827.465 kb on + strand, within yejM at 2827.466 kb on - strand, within yejM at 2827.466 kb on - strand, within yejM at 2827.466 kb on - strand, within yejM at 2827.466 kb on - strand, within yejM at 2827.466 kb on - strand, within yejM at 2827.484 kb on - strand, within yejM at 2827.512 kb on - strand, within yejM at 2827.529 kb on + strand, within yejM at 2827.600 kb on + strand, within yejM at 2827.620 kb on - strand, within yejM at 2827.620 kb on - strand, within yejM at 2827.620 kb on - strand, within yejM at 2827.703 kb on + strand, within yejM at 2827.716 kb on - strand, within yejM at 2827.829 kb on - strand, within yejM at 2828.677 kb on - strand at 2828.697 kb on - strand at 2828.697 kb on - strand at 2828.697 kb on - strand at 2828.697 kb on - strand at 2828.697 kb on - strand at 2828.697 kb on - strand at 2828.697 kb on - strand at 2828.731 kb on - strand at 2828.737 kb on + strand at 2828.765 kb on + strand at 2828.785 kb on - strand at 2828.828 kb on - strand at 2828.839 kb on + strand at 2828.839 kb on + strand at 2828.881 kb on + strand at 2828.981 kb on + strand, within yejK at 2828.982 kb on - strand, within yejK at 2828.995 kb on + strand, within yejK at 2829.002 kb on + strand, within yejK at 2829.083 kb on - strand, within yejK at 2829.185 kb on + strand, within yejK at 2829.260 kb on + strand, within yejK at 2829.268 kb on + strand, within yejK at 2829.269 kb on - strand, within yejK at 2829.364 kb on - strand, within yejK at 2829.522 kb on - strand, within yejK at 2829.523 kb on + strand, within yejK at 2829.523 kb on + strand, within yejK at 2829.527 kb on + strand, within yejK at 2829.527 kb on + strand, within yejK at 2829.527 kb on + strand, within yejK at 2829.527 kb on + strand, within yejK at 2829.527 kb on + strand, within yejK at 2829.528 kb on - strand, within yejK at 2829.532 kb on + strand, within yejK at 2829.532 kb on + strand, within yejK
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,827,464 - yejM MCAODC_14385 0.46 -1.5 2,827,465 + yejM MCAODC_14385 0.46 +0.9 2,827,466 - yejM MCAODC_14385 0.46 -1.9 2,827,466 - yejM MCAODC_14385 0.46 +0.4 2,827,466 - yejM MCAODC_14385 0.46 +0.3 2,827,466 - yejM MCAODC_14385 0.46 -2.9 2,827,466 - yejM MCAODC_14385 0.46 -0.6 2,827,484 - yejM MCAODC_14385 0.47 -2.9 2,827,512 - yejM MCAODC_14385 0.49 +0.5 2,827,529 + yejM MCAODC_14385 0.50 +0.2 2,827,600 + yejM MCAODC_14385 0.54 -0.0 2,827,620 - yejM MCAODC_14385 0.55 -0.5 2,827,620 - yejM MCAODC_14385 0.55 -0.2 2,827,620 - yejM MCAODC_14385 0.55 -1.8 2,827,703 + yejM MCAODC_14385 0.60 -0.5 2,827,716 - yejM MCAODC_14385 0.60 +0.4 2,827,829 - yejM MCAODC_14385 0.67 -0.3 2,828,677 - -0.1 2,828,697 - +0.3 2,828,697 - -0.5 2,828,697 - +0.2 2,828,697 - +0.4 2,828,697 - +1.1 2,828,697 - -0.2 2,828,697 - -2.2 2,828,731 - +0.9 2,828,737 + -0.4 2,828,765 + -1.0 2,828,785 - +0.3 2,828,828 - -0.6 2,828,839 + -0.0 2,828,839 + -0.9 2,828,881 + +0.6 2,828,981 + yejK MCAODC_14395 0.14 +0.2 2,828,982 - yejK MCAODC_14395 0.14 +1.1 2,828,995 + yejK MCAODC_14395 0.15 -1.3 2,829,002 + yejK MCAODC_14395 0.16 -0.4 2,829,083 - yejK MCAODC_14395 0.24 +0.6 2,829,185 + yejK MCAODC_14395 0.34 +0.6 2,829,260 + yejK MCAODC_14395 0.41 +0.9 2,829,268 + yejK MCAODC_14395 0.42 -0.7 2,829,269 - yejK MCAODC_14395 0.42 +1.1 2,829,364 - yejK MCAODC_14395 0.52 +0.4 2,829,522 - yejK MCAODC_14395 0.67 -0.0 2,829,523 + yejK MCAODC_14395 0.67 -0.2 2,829,523 + yejK MCAODC_14395 0.67 +1.6 2,829,527 + yejK MCAODC_14395 0.68 -0.8 2,829,527 + yejK MCAODC_14395 0.68 -0.3 2,829,527 + yejK MCAODC_14395 0.68 +0.5 2,829,527 + yejK MCAODC_14395 0.68 -1.1 2,829,527 + yejK MCAODC_14395 0.68 -2.4 2,829,528 - yejK MCAODC_14395 0.68 -0.7 2,829,532 + yejK MCAODC_14395 0.68 -0.2 2,829,532 + yejK MCAODC_14395 0.68 +0.6
Or see this region's nucleotide sequence