Strain Fitness in Escherichia coli ECRC101 around MCAODC_12945

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfdV and MCAODC_12945 are separated by 73 nucleotidesMCAODC_12945 and yfdE are separated by 32 nucleotidesyfdE and evgS are separated by 55 nucleotides MCAODC_12940: yfdV - transporter YfdV, at 2,566,647 to 2,567,591 yfdV MCAODC_12945: MCAODC_12945 - CoA-transferase, at 2,567,665 to 2,567,895 _12945 MCAODC_12950: yfdE - CoA:oxalate CoA-transferase, at 2,567,928 to 2,568,806 yfdE MCAODC_12955: evgS - acid-sensing system histidine kinase EvgS, at 2,568,862 to 2,572,455 evgS Position (kb) 2567 2568Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2566.754 kb on + strand, within yfdVat 2566.906 kb on - strand, within yfdVat 2566.922 kb on + strand, within yfdVat 2566.922 kb on + strand, within yfdVat 2567.003 kb on + strand, within yfdVat 2567.033 kb on - strand, within yfdVat 2567.033 kb on - strand, within yfdVat 2567.121 kb on - strand, within yfdVat 2567.129 kb on + strand, within yfdVat 2567.173 kb on + strand, within yfdVat 2567.173 kb on + strand, within yfdVat 2567.174 kb on - strand, within yfdVat 2567.174 kb on - strand, within yfdVat 2567.247 kb on - strand, within yfdVat 2567.247 kb on - strand, within yfdVat 2567.264 kb on + strand, within yfdVat 2567.340 kb on + strand, within yfdVat 2567.341 kb on - strand, within yfdVat 2567.342 kb on + strand, within yfdVat 2567.343 kb on - strand, within yfdVat 2567.394 kb on - strand, within yfdVat 2567.497 kb on - strandat 2567.510 kb on + strandat 2567.568 kb on + strandat 2567.615 kb on + strandat 2567.616 kb on - strandat 2567.659 kb on - strandat 2567.674 kb on - strandat 2567.847 kb on + strand, within MCAODC_12945at 2567.848 kb on - strand, within MCAODC_12945at 2567.910 kb on - strandat 2567.915 kb on + strandat 2567.918 kb on - strandat 2567.947 kb on + strandat 2568.031 kb on + strand, within yfdEat 2568.031 kb on + strand, within yfdEat 2568.031 kb on + strand, within yfdEat 2568.032 kb on - strand, within yfdEat 2568.033 kb on + strand, within yfdEat 2568.033 kb on + strand, within yfdEat 2568.033 kb on + strand, within yfdEat 2568.033 kb on + strand, within yfdEat 2568.034 kb on - strand, within yfdEat 2568.034 kb on - strand, within yfdEat 2568.070 kb on + strand, within yfdEat 2568.070 kb on + strand, within yfdEat 2568.087 kb on + strand, within yfdEat 2568.182 kb on - strand, within yfdEat 2568.196 kb on - strand, within yfdEat 2568.265 kb on + strand, within yfdEat 2568.315 kb on + strand, within yfdEat 2568.315 kb on + strand, within yfdEat 2568.315 kb on + strand, within yfdEat 2568.315 kb on + strand, within yfdEat 2568.316 kb on - strand, within yfdEat 2568.316 kb on - strand, within yfdEat 2568.316 kb on - strand, within yfdEat 2568.318 kb on - strand, within yfdEat 2568.364 kb on - strand, within yfdEat 2568.537 kb on + strand, within yfdEat 2568.622 kb on + strand, within yfdEat 2568.623 kb on - strand, within yfdEat 2568.804 kb on + strandat 2568.804 kb on + strandat 2568.810 kb on + strandat 2568.810 kb on + strandat 2568.811 kb on - strandat 2568.827 kb on + strandat 2568.827 kb on + strandat 2568.827 kb on + strandat 2568.827 kb on + strandat 2568.827 kb on + strandat 2568.827 kb on + strandat 2568.828 kb on - strandat 2568.859 kb on + strandat 2568.860 kb on - strandat 2568.863 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,566,754 + yfdV MCAODC_12940 0.11 +1.1
2,566,906 - yfdV MCAODC_12940 0.27 +0.9
2,566,922 + yfdV MCAODC_12940 0.29 -0.8
2,566,922 + yfdV MCAODC_12940 0.29 -0.2
2,567,003 + yfdV MCAODC_12940 0.38 +0.3
2,567,033 - yfdV MCAODC_12940 0.41 +0.9
2,567,033 - yfdV MCAODC_12940 0.41 -2.8
2,567,121 - yfdV MCAODC_12940 0.50 +0.7
2,567,129 + yfdV MCAODC_12940 0.51 -0.9
2,567,173 + yfdV MCAODC_12940 0.56 +0.7
2,567,173 + yfdV MCAODC_12940 0.56 +1.5
2,567,174 - yfdV MCAODC_12940 0.56 +2.5
2,567,174 - yfdV MCAODC_12940 0.56 -0.6
2,567,247 - yfdV MCAODC_12940 0.63 -1.8
2,567,247 - yfdV MCAODC_12940 0.63 -0.7
2,567,264 + yfdV MCAODC_12940 0.65 +0.5
2,567,340 + yfdV MCAODC_12940 0.73 +2.2
2,567,341 - yfdV MCAODC_12940 0.73 +0.3
2,567,342 + yfdV MCAODC_12940 0.74 +0.9
2,567,343 - yfdV MCAODC_12940 0.74 +0.4
2,567,394 - yfdV MCAODC_12940 0.79 +0.8
2,567,497 - +0.9
2,567,510 + -0.8
2,567,568 + +0.1
2,567,615 + -0.1
2,567,616 - +0.9
2,567,659 - +0.6
2,567,674 - -0.8
2,567,847 + MCAODC_12945 0.79 +1.2
2,567,848 - MCAODC_12945 0.79 -1.3
2,567,910 - +2.8
2,567,915 + -0.7
2,567,918 - -1.6
2,567,947 + +0.2
2,568,031 + yfdE MCAODC_12950 0.12 +0.2
2,568,031 + yfdE MCAODC_12950 0.12 +0.4
2,568,031 + yfdE MCAODC_12950 0.12 -0.3
2,568,032 - yfdE MCAODC_12950 0.12 +0.7
2,568,033 + yfdE MCAODC_12950 0.12 -0.1
2,568,033 + yfdE MCAODC_12950 0.12 -0.1
2,568,033 + yfdE MCAODC_12950 0.12 +0.5
2,568,033 + yfdE MCAODC_12950 0.12 -0.6
2,568,034 - yfdE MCAODC_12950 0.12 +0.6
2,568,034 - yfdE MCAODC_12950 0.12 -0.5
2,568,070 + yfdE MCAODC_12950 0.16 +0.2
2,568,070 + yfdE MCAODC_12950 0.16 +0.5
2,568,087 + yfdE MCAODC_12950 0.18 +0.6
2,568,182 - yfdE MCAODC_12950 0.29 +0.6
2,568,196 - yfdE MCAODC_12950 0.30 +2.2
2,568,265 + yfdE MCAODC_12950 0.38 -0.7
2,568,315 + yfdE MCAODC_12950 0.44 +0.2
2,568,315 + yfdE MCAODC_12950 0.44 -0.6
2,568,315 + yfdE MCAODC_12950 0.44 +0.6
2,568,315 + yfdE MCAODC_12950 0.44 +0.6
2,568,316 - yfdE MCAODC_12950 0.44 -0.0
2,568,316 - yfdE MCAODC_12950 0.44 -0.5
2,568,316 - yfdE MCAODC_12950 0.44 -0.6
2,568,318 - yfdE MCAODC_12950 0.44 -0.7
2,568,364 - yfdE MCAODC_12950 0.50 +0.1
2,568,537 + yfdE MCAODC_12950 0.69 -1.5
2,568,622 + yfdE MCAODC_12950 0.79 -0.1
2,568,623 - yfdE MCAODC_12950 0.79 -0.6
2,568,804 + +0.3
2,568,804 + -0.2
2,568,810 + -0.1
2,568,810 + -0.4
2,568,811 - +0.8
2,568,827 + +0.7
2,568,827 + +0.7
2,568,827 + +0.2
2,568,827 + +1.4
2,568,827 + +0.1
2,568,827 + -1.1
2,568,828 - +1.0
2,568,859 + -0.2
2,568,860 - -1.8
2,568,863 + -0.7

Or see this region's nucleotide sequence