Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt csrA and Ser_trna are separated by 315 nucleotides Ser_trna and Arg_trna are separated by 3 nucleotides Arg_trna and Arg_trna are separated by 64 nucleotides Arg_trna and Arg_trna are separated by 62 nucleotides Arg_trna and Arg_trna are separated by 102 nucleotides Arg_trna and yqaB are separated by 280 nucleotides
MCAODC_11245: csrA - carbon storage regulator CsrA, at 2,241,884 to 2,242,069
csrA
MCAODC_11250: Ser_trna - tRNA-Ser(gct), at 2,242,385 to 2,242,477
_trna
MCAODC_11255: Arg_trna - tRNA-Arg(acg), at 2,242,481 to 2,242,557
_trna
MCAODC_11260: Arg_trna - tRNA-Arg(acg), at 2,242,622 to 2,242,698
_trna
MCAODC_11265: Arg_trna - tRNA-Arg(acg), at 2,242,761 to 2,242,837
_trna
MCAODC_11270: Arg_trna - tRNA-Arg(acg), at 2,242,940 to 2,243,016
_trna
MCAODC_11275: yqaB - fructose-1-phosphate/6-phosphogluconate phosphatase, at 2,243,297 to 2,243,863
yqaB
Position (kb)
2242
2243 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2241.766 kb on + strand at 2241.766 kb on + strand at 2241.782 kb on + strand at 2241.782 kb on + strand at 2241.782 kb on + strand at 2241.783 kb on - strand at 2241.783 kb on - strand at 2241.788 kb on + strand at 2241.788 kb on + strand at 2241.788 kb on + strand at 2241.788 kb on + strand at 2241.789 kb on - strand at 2241.820 kb on + strand at 2241.821 kb on - strand at 2242.064 kb on + strand at 2242.068 kb on - strand at 2242.127 kb on + strand at 2242.127 kb on + strand at 2242.127 kb on + strand at 2242.127 kb on + strand at 2242.127 kb on + strand at 2242.128 kb on - strand at 2242.130 kb on - strand at 2242.163 kb on - strand at 2242.163 kb on - strand at 2242.163 kb on - strand at 2242.184 kb on - strand at 2242.219 kb on - strand at 2242.249 kb on - strand at 2242.563 kb on + strand at 2242.570 kb on + strand at 2242.578 kb on + strand at 2242.604 kb on + strand at 2242.711 kb on + strand at 2242.711 kb on + strand at 2242.719 kb on + strand at 2242.719 kb on + strand at 2242.719 kb on + strand at 2242.838 kb on + strand at 2242.867 kb on + strand at 2242.897 kb on + strand at 2242.912 kb on + strand at 2243.017 kb on + strand at 2243.098 kb on + strand at 2243.188 kb on + strand at 2243.196 kb on + strand at 2243.196 kb on + strand at 2243.197 kb on - strand at 2243.255 kb on + strand at 2243.256 kb on - strand at 2243.265 kb on + strand at 2243.265 kb on + strand at 2243.301 kb on - strand at 2243.385 kb on + strand, within yqaB at 2243.389 kb on - strand, within yqaB at 2243.434 kb on + strand, within yqaB at 2243.435 kb on - strand, within yqaB at 2243.456 kb on - strand, within yqaB at 2243.470 kb on + strand, within yqaB at 2243.471 kb on - strand, within yqaB at 2243.532 kb on + strand, within yqaB at 2243.533 kb on - strand, within yqaB at 2243.533 kb on - strand, within yqaB at 2243.539 kb on + strand, within yqaB at 2243.539 kb on + strand, within yqaB at 2243.539 kb on + strand, within yqaB at 2243.540 kb on - strand, within yqaB at 2243.552 kb on - strand, within yqaB at 2243.616 kb on + strand, within yqaB at 2243.679 kb on - strand, within yqaB at 2243.720 kb on - strand, within yqaB at 2243.758 kb on + strand, within yqaB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,241,766 + -0.5 2,241,766 + -2.0 2,241,782 + +0.4 2,241,782 + -0.5 2,241,782 + -1.5 2,241,783 - -2.5 2,241,783 - -2.0 2,241,788 + -0.3 2,241,788 + +0.5 2,241,788 + -0.3 2,241,788 + +0.2 2,241,789 - -1.8 2,241,820 + +0.5 2,241,821 - +1.6 2,242,064 + -0.0 2,242,068 - -0.1 2,242,127 + +1.3 2,242,127 + +1.9 2,242,127 + -0.0 2,242,127 + -0.5 2,242,127 + +1.0 2,242,128 - +0.4 2,242,130 - +0.3 2,242,163 - +0.4 2,242,163 - +0.4 2,242,163 - -0.3 2,242,184 - +0.5 2,242,219 - +1.3 2,242,249 - +1.3 2,242,563 + -0.5 2,242,570 + -1.8 2,242,578 + +1.7 2,242,604 + -0.8 2,242,711 + -1.3 2,242,711 + -0.1 2,242,719 + +1.3 2,242,719 + -0.0 2,242,719 + +0.1 2,242,838 + +0.7 2,242,867 + -0.2 2,242,897 + +0.1 2,242,912 + +0.5 2,243,017 + +0.1 2,243,098 + +0.4 2,243,188 + +1.7 2,243,196 + -0.3 2,243,196 + +0.7 2,243,197 - +0.3 2,243,255 + +1.6 2,243,256 - +0.5 2,243,265 + +2.1 2,243,265 + +1.8 2,243,301 - -1.4 2,243,385 + yqaB MCAODC_11275 0.16 +0.9 2,243,389 - yqaB MCAODC_11275 0.16 -1.2 2,243,434 + yqaB MCAODC_11275 0.24 -0.1 2,243,435 - yqaB MCAODC_11275 0.24 -1.8 2,243,456 - yqaB MCAODC_11275 0.28 -0.1 2,243,470 + yqaB MCAODC_11275 0.31 -0.5 2,243,471 - yqaB MCAODC_11275 0.31 +0.3 2,243,532 + yqaB MCAODC_11275 0.41 -2.6 2,243,533 - yqaB MCAODC_11275 0.42 -1.5 2,243,533 - yqaB MCAODC_11275 0.42 +0.2 2,243,539 + yqaB MCAODC_11275 0.43 -0.7 2,243,539 + yqaB MCAODC_11275 0.43 -0.3 2,243,539 + yqaB MCAODC_11275 0.43 +0.7 2,243,540 - yqaB MCAODC_11275 0.43 -1.1 2,243,552 - yqaB MCAODC_11275 0.45 +0.8 2,243,616 + yqaB MCAODC_11275 0.56 +0.5 2,243,679 - yqaB MCAODC_11275 0.67 -1.1 2,243,720 - yqaB MCAODC_11275 0.75 +1.1 2,243,758 + yqaB MCAODC_11275 0.81 +0.2
Or see this region's nucleotide sequence