Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt epd and pgk are separated by 49 nucleotides pgk and fbaA are separated by 214 nucleotides
MCAODC_09905: epd - erythrose-4-phosphate dehydrogenase, at 1,973,630 to 1,974,649
epd
MCAODC_09910: pgk - phosphoglycerate kinase, at 1,974,699 to 1,975,862
pgk
MCAODC_09915: fbaA - class II fructose-bisphosphate aldolase, at 1,976,077 to 1,977,156
fbaA
Position (kb) 1974
1975
1976 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1973.777 kb on + strand, within epd at 1973.777 kb on + strand, within epd at 1973.811 kb on + strand, within epd at 1973.811 kb on + strand, within epd at 1973.913 kb on + strand, within epd at 1973.913 kb on + strand, within epd at 1973.913 kb on + strand, within epd at 1973.914 kb on - strand, within epd at 1973.914 kb on - strand, within epd at 1973.934 kb on + strand, within epd at 1973.934 kb on + strand, within epd at 1973.934 kb on + strand, within epd at 1973.934 kb on + strand, within epd at 1974.036 kb on - strand, within epd at 1974.094 kb on + strand, within epd at 1974.094 kb on + strand, within epd at 1974.108 kb on + strand, within epd at 1974.130 kb on - strand, within epd at 1974.140 kb on + strand, within epd at 1974.209 kb on + strand, within epd at 1974.209 kb on + strand, within epd at 1974.210 kb on - strand, within epd at 1974.349 kb on - strand, within epd at 1974.349 kb on - strand, within epd at 1974.453 kb on + strand, within epd at 1974.461 kb on + strand, within epd at 1974.463 kb on + strand, within epd at 1974.621 kb on + strand at 1974.621 kb on + strand at 1974.621 kb on + strand at 1974.621 kb on + strand at 1974.625 kb on + strand at 1974.625 kb on + strand at 1974.625 kb on + strand at 1974.625 kb on + strand at 1974.625 kb on + strand at 1974.631 kb on + strand at 1974.676 kb on + strand at 1975.819 kb on + strand at 1975.853 kb on + strand at 1975.853 kb on + strand at 1975.853 kb on + strand at 1975.860 kb on + strand at 1976.047 kb on + strand at 1976.047 kb on + strand at 1976.049 kb on + strand at 1976.049 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,973,777 + epd MCAODC_09905 0.14 +0.4 1,973,777 + epd MCAODC_09905 0.14 -1.0 1,973,811 + epd MCAODC_09905 0.18 -0.1 1,973,811 + epd MCAODC_09905 0.18 -0.0 1,973,913 + epd MCAODC_09905 0.28 -1.2 1,973,913 + epd MCAODC_09905 0.28 -0.0 1,973,913 + epd MCAODC_09905 0.28 -0.0 1,973,914 - epd MCAODC_09905 0.28 -0.5 1,973,914 - epd MCAODC_09905 0.28 +0.2 1,973,934 + epd MCAODC_09905 0.30 +0.0 1,973,934 + epd MCAODC_09905 0.30 -1.3 1,973,934 + epd MCAODC_09905 0.30 -0.7 1,973,934 + epd MCAODC_09905 0.30 +0.3 1,974,036 - epd MCAODC_09905 0.40 +0.3 1,974,094 + epd MCAODC_09905 0.45 -0.2 1,974,094 + epd MCAODC_09905 0.45 +0.5 1,974,108 + epd MCAODC_09905 0.47 -2.3 1,974,130 - epd MCAODC_09905 0.49 -0.8 1,974,140 + epd MCAODC_09905 0.50 -0.1 1,974,209 + epd MCAODC_09905 0.57 -1.0 1,974,209 + epd MCAODC_09905 0.57 +2.6 1,974,210 - epd MCAODC_09905 0.57 -1.5 1,974,349 - epd MCAODC_09905 0.70 -1.4 1,974,349 - epd MCAODC_09905 0.70 -0.5 1,974,453 + epd MCAODC_09905 0.81 -0.5 1,974,461 + epd MCAODC_09905 0.81 -1.4 1,974,463 + epd MCAODC_09905 0.82 +0.2 1,974,621 + -1.0 1,974,621 + +0.9 1,974,621 + +1.4 1,974,621 + -0.3 1,974,625 + +0.1 1,974,625 + -1.0 1,974,625 + -1.2 1,974,625 + +0.0 1,974,625 + -0.6 1,974,631 + -0.3 1,974,676 + -1.0 1,975,819 + +0.9 1,975,853 + -0.1 1,975,853 + -1.5 1,975,853 + -0.4 1,975,860 + -0.4 1,976,047 + +1.9 1,976,047 + +0.8 1,976,049 + +0.4 1,976,049 + -1.1
Or see this region's nucleotide sequence