Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rsmE and endA are separated by 79 nucleotides endA and sprT are separated by 94 nucleotides sprT and galP are separated by 118 nucleotides
MCAODC_09800: rsmE - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 1,951,433 to 1,952,164
rsmE
MCAODC_09805: endA - deoxyribonuclease I, at 1,952,244 to 1,952,951
endA
MCAODC_09810: sprT - SprT family zinc-dependent metalloprotease, at 1,953,046 to 1,953,501
sprT
MCAODC_09815: galP - galactose/proton symporter, at 1,953,620 to 1,955,014
galP
Position (kb) 1953
1954 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1952.084 kb on - strand, within rsmE at 1952.084 kb on - strand, within rsmE at 1952.145 kb on + strand at 1952.146 kb on - strand at 1952.164 kb on + strand at 1952.164 kb on + strand at 1952.164 kb on + strand at 1952.164 kb on + strand at 1952.164 kb on + strand at 1952.164 kb on + strand at 1952.164 kb on + strand at 1952.165 kb on - strand at 1952.165 kb on - strand at 1952.165 kb on - strand at 1952.165 kb on - strand at 1952.165 kb on - strand at 1952.165 kb on - strand at 1952.165 kb on - strand at 1952.165 kb on - strand at 1952.199 kb on + strand at 1952.200 kb on - strand at 1952.240 kb on + strand at 1952.240 kb on + strand at 1952.240 kb on + strand at 1952.240 kb on + strand at 1952.240 kb on + strand at 1952.241 kb on - strand at 1952.241 kb on - strand at 1952.245 kb on + strand at 1952.246 kb on - strand at 1952.278 kb on + strand at 1952.278 kb on + strand at 1952.278 kb on + strand at 1952.279 kb on - strand at 1952.279 kb on - strand at 1952.279 kb on - strand at 1952.285 kb on + strand at 1952.299 kb on - strand at 1952.404 kb on + strand, within endA at 1952.404 kb on + strand, within endA at 1952.404 kb on + strand, within endA at 1952.418 kb on - strand, within endA at 1952.418 kb on - strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.425 kb on + strand, within endA at 1952.426 kb on - strand, within endA at 1952.539 kb on + strand, within endA at 1952.539 kb on + strand, within endA at 1952.539 kb on + strand, within endA at 1952.540 kb on - strand, within endA at 1952.540 kb on - strand, within endA at 1952.543 kb on + strand, within endA at 1952.544 kb on - strand, within endA at 1952.544 kb on - strand, within endA at 1952.544 kb on - strand, within endA at 1952.592 kb on - strand, within endA at 1952.597 kb on + strand, within endA at 1952.598 kb on - strand, within endA at 1952.598 kb on - strand, within endA at 1952.618 kb on - strand, within endA at 1952.801 kb on + strand, within endA at 1952.801 kb on + strand, within endA at 1952.801 kb on + strand, within endA at 1952.801 kb on + strand, within endA at 1952.802 kb on - strand, within endA at 1952.813 kb on - strand, within endA at 1952.820 kb on - strand, within endA at 1952.873 kb on + strand, within endA at 1952.874 kb on - strand, within endA at 1952.879 kb on + strand, within endA at 1952.879 kb on + strand, within endA at 1952.879 kb on + strand, within endA at 1952.879 kb on + strand, within endA at 1952.879 kb on + strand, within endA at 1952.880 kb on - strand, within endA at 1952.880 kb on - strand, within endA at 1952.880 kb on - strand, within endA at 1952.880 kb on - strand, within endA at 1952.934 kb on - strand at 1952.941 kb on + strand at 1952.947 kb on + strand at 1952.947 kb on + strand at 1952.947 kb on + strand at 1952.948 kb on - strand at 1952.948 kb on - strand at 1952.948 kb on - strand at 1952.948 kb on - strand at 1952.948 kb on - strand at 1952.948 kb on - strand at 1952.948 kb on - strand at 1952.957 kb on - strand at 1952.957 kb on - strand at 1952.957 kb on - strand at 1953.034 kb on + strand at 1953.034 kb on + strand at 1953.047 kb on + strand at 1953.107 kb on - strand, within sprT at 1953.115 kb on - strand, within sprT at 1953.129 kb on + strand, within sprT at 1953.129 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.151 kb on - strand, within sprT at 1953.151 kb on - strand, within sprT at 1953.151 kb on - strand, within sprT at 1953.151 kb on - strand, within sprT at 1953.151 kb on - strand, within sprT at 1953.151 kb on - strand, within sprT at 1953.159 kb on - strand, within sprT at 1953.289 kb on + strand, within sprT at 1953.317 kb on - strand, within sprT at 1953.380 kb on + strand, within sprT at 1953.425 kb on + strand, within sprT at 1953.425 kb on + strand, within sprT at 1953.426 kb on - strand, within sprT at 1953.426 kb on - strand, within sprT at 1953.450 kb on + strand, within sprT at 1953.450 kb on + strand, within sprT at 1953.450 kb on + strand, within sprT at 1953.556 kb on + strand at 1953.557 kb on - strand at 1953.649 kb on + strand at 1953.650 kb on - strand at 1953.667 kb on + strand at 1953.668 kb on - strand at 1953.668 kb on - strand at 1953.676 kb on + strand at 1953.676 kb on + strand at 1953.677 kb on - strand at 1953.677 kb on - strand at 1953.731 kb on - strand at 1953.766 kb on + strand, within galP at 1953.766 kb on + strand, within galP at 1953.766 kb on + strand, within galP at 1953.767 kb on - strand, within galP at 1953.767 kb on - strand, within galP at 1953.767 kb on - strand, within galP at 1953.767 kb on - strand, within galP at 1953.767 kb on - strand, within galP at 1953.770 kb on - strand, within galP at 1953.940 kb on + strand, within galP at 1953.940 kb on + strand, within galP at 1953.941 kb on - strand, within galP at 1953.941 kb on - strand, within galP at 1953.941 kb on - strand, within galP at 1953.941 kb on - strand, within galP at 1953.941 kb on - strand, within galP at 1953.970 kb on - strand, within galP at 1953.997 kb on + strand, within galP at 1953.997 kb on + strand, within galP at 1954.009 kb on + strand, within galP at 1954.025 kb on - strand, within galP at 1954.066 kb on + strand, within galP at 1954.112 kb on + strand, within galP at 1954.112 kb on + strand, within galP at 1954.112 kb on + strand, within galP at 1954.113 kb on - strand, within galP at 1954.113 kb on - strand, within galP at 1954.165 kb on + strand, within galP at 1954.165 kb on + strand, within galP at 1954.165 kb on + strand, within galP at 1954.166 kb on - strand, within galP at 1954.166 kb on - strand, within galP at 1954.168 kb on - strand, within galP at 1954.168 kb on - strand, within galP at 1954.200 kb on + strand, within galP at 1954.200 kb on + strand, within galP at 1954.201 kb on - strand, within galP at 1954.201 kb on - strand, within galP at 1954.201 kb on - strand, within galP at 1954.201 kb on - strand, within galP at 1954.235 kb on + strand, within galP at 1954.236 kb on - strand, within galP at 1954.236 kb on - strand, within galP at 1954.247 kb on + strand, within galP at 1954.279 kb on + strand, within galP at 1954.279 kb on + strand, within galP at 1954.279 kb on + strand, within galP at 1954.279 kb on + strand, within galP at 1954.280 kb on - strand, within galP at 1954.280 kb on - strand, within galP at 1954.280 kb on - strand, within galP at 1954.289 kb on - strand, within galP at 1954.312 kb on + strand, within galP at 1954.313 kb on - strand, within galP at 1954.483 kb on + strand, within galP at 1954.483 kb on + strand, within galP at 1954.484 kb on - strand, within galP
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,952,084 - rsmE MCAODC_09800 0.89 -0.1 1,952,084 - rsmE MCAODC_09800 0.89 +0.7 1,952,145 + +0.5 1,952,146 - +0.9 1,952,164 + +0.1 1,952,164 + +0.8 1,952,164 + +1.1 1,952,164 + -0.0 1,952,164 + -1.7 1,952,164 + -0.0 1,952,164 + +0.6 1,952,165 - -1.3 1,952,165 - -0.3 1,952,165 - +0.6 1,952,165 - -1.4 1,952,165 - +0.3 1,952,165 - -0.3 1,952,165 - -0.4 1,952,165 - -1.6 1,952,199 + +0.6 1,952,200 - +0.1 1,952,240 + +1.0 1,952,240 + -1.2 1,952,240 + +0.3 1,952,240 + +1.2 1,952,240 + -0.7 1,952,241 - +0.4 1,952,241 - +2.1 1,952,245 + +0.1 1,952,246 - +0.0 1,952,278 + -1.0 1,952,278 + +0.3 1,952,278 + +0.4 1,952,279 - +0.0 1,952,279 - +0.9 1,952,279 - +0.7 1,952,285 + -0.5 1,952,299 - -0.4 1,952,404 + endA MCAODC_09805 0.23 -1.3 1,952,404 + endA MCAODC_09805 0.23 +0.3 1,952,404 + endA MCAODC_09805 0.23 -1.6 1,952,418 - endA MCAODC_09805 0.25 -0.3 1,952,418 - endA MCAODC_09805 0.25 -0.2 1,952,419 + endA MCAODC_09805 0.25 +0.4 1,952,419 + endA MCAODC_09805 0.25 -0.2 1,952,419 + endA MCAODC_09805 0.25 -0.5 1,952,419 + endA MCAODC_09805 0.25 +0.1 1,952,419 + endA MCAODC_09805 0.25 +1.0 1,952,419 + endA MCAODC_09805 0.25 -0.1 1,952,419 + endA MCAODC_09805 0.25 -1.0 1,952,419 + endA MCAODC_09805 0.25 -0.3 1,952,419 + endA MCAODC_09805 0.25 -3.3 1,952,419 + endA MCAODC_09805 0.25 +0.4 1,952,420 - endA MCAODC_09805 0.25 -1.1 1,952,420 - endA MCAODC_09805 0.25 -3.0 1,952,420 - endA MCAODC_09805 0.25 -0.7 1,952,420 - endA MCAODC_09805 0.25 -0.2 1,952,420 - endA MCAODC_09805 0.25 -0.3 1,952,420 - endA MCAODC_09805 0.25 -1.1 1,952,420 - endA MCAODC_09805 0.25 +0.6 1,952,420 - endA MCAODC_09805 0.25 +1.1 1,952,420 - endA MCAODC_09805 0.25 -0.2 1,952,420 - endA MCAODC_09805 0.25 +0.0 1,952,420 - endA MCAODC_09805 0.25 +1.3 1,952,425 + endA MCAODC_09805 0.26 -1.2 1,952,426 - endA MCAODC_09805 0.26 -1.9 1,952,539 + endA MCAODC_09805 0.42 -1.2 1,952,539 + endA MCAODC_09805 0.42 +0.9 1,952,539 + endA MCAODC_09805 0.42 +0.7 1,952,540 - endA MCAODC_09805 0.42 +0.6 1,952,540 - endA MCAODC_09805 0.42 -1.0 1,952,543 + endA MCAODC_09805 0.42 -1.0 1,952,544 - endA MCAODC_09805 0.42 +1.4 1,952,544 - endA MCAODC_09805 0.42 +0.5 1,952,544 - endA MCAODC_09805 0.42 +1.1 1,952,592 - endA MCAODC_09805 0.49 -0.1 1,952,597 + endA MCAODC_09805 0.50 -0.5 1,952,598 - endA MCAODC_09805 0.50 -0.8 1,952,598 - endA MCAODC_09805 0.50 -1.0 1,952,618 - endA MCAODC_09805 0.53 +0.0 1,952,801 + endA MCAODC_09805 0.79 -0.6 1,952,801 + endA MCAODC_09805 0.79 +0.3 1,952,801 + endA MCAODC_09805 0.79 +0.4 1,952,801 + endA MCAODC_09805 0.79 +0.7 1,952,802 - endA MCAODC_09805 0.79 -1.0 1,952,813 - endA MCAODC_09805 0.80 -0.6 1,952,820 - endA MCAODC_09805 0.81 -0.1 1,952,873 + endA MCAODC_09805 0.89 -3.6 1,952,874 - endA MCAODC_09805 0.89 +0.8 1,952,879 + endA MCAODC_09805 0.90 -0.6 1,952,879 + endA MCAODC_09805 0.90 -0.7 1,952,879 + endA MCAODC_09805 0.90 +1.2 1,952,879 + endA MCAODC_09805 0.90 -0.1 1,952,879 + endA MCAODC_09805 0.90 -0.9 1,952,880 - endA MCAODC_09805 0.90 +1.1 1,952,880 - endA MCAODC_09805 0.90 -0.3 1,952,880 - endA MCAODC_09805 0.90 -0.2 1,952,880 - endA MCAODC_09805 0.90 +0.5 1,952,934 - -0.3 1,952,941 + -2.0 1,952,947 + +0.7 1,952,947 + -0.2 1,952,947 + -0.1 1,952,948 - -0.5 1,952,948 - +0.1 1,952,948 - -0.6 1,952,948 - -1.7 1,952,948 - -1.1 1,952,948 - -0.5 1,952,948 - +0.2 1,952,957 - +1.7 1,952,957 - -0.1 1,952,957 - -0.5 1,953,034 + +0.0 1,953,034 + +2.5 1,953,047 + -0.2 1,953,107 - sprT MCAODC_09810 0.13 +0.3 1,953,115 - sprT MCAODC_09810 0.15 +0.5 1,953,129 + sprT MCAODC_09810 0.18 -0.2 1,953,129 + sprT MCAODC_09810 0.18 -2.0 1,953,150 + sprT MCAODC_09810 0.23 +2.0 1,953,150 + sprT MCAODC_09810 0.23 -0.3 1,953,150 + sprT MCAODC_09810 0.23 +1.5 1,953,150 + sprT MCAODC_09810 0.23 -2.7 1,953,150 + sprT MCAODC_09810 0.23 -0.7 1,953,150 + sprT MCAODC_09810 0.23 -2.6 1,953,150 + sprT MCAODC_09810 0.23 +0.5 1,953,150 + sprT MCAODC_09810 0.23 +0.5 1,953,150 + sprT MCAODC_09810 0.23 +1.4 1,953,151 - sprT MCAODC_09810 0.23 -0.8 1,953,151 - sprT MCAODC_09810 0.23 -0.4 1,953,151 - sprT MCAODC_09810 0.23 -0.1 1,953,151 - sprT MCAODC_09810 0.23 +0.6 1,953,151 - sprT MCAODC_09810 0.23 +1.3 1,953,151 - sprT MCAODC_09810 0.23 -0.1 1,953,159 - sprT MCAODC_09810 0.25 +0.9 1,953,289 + sprT MCAODC_09810 0.53 +0.7 1,953,317 - sprT MCAODC_09810 0.59 -0.3 1,953,380 + sprT MCAODC_09810 0.73 +1.6 1,953,425 + sprT MCAODC_09810 0.83 -0.8 1,953,425 + sprT MCAODC_09810 0.83 +0.2 1,953,426 - sprT MCAODC_09810 0.83 +0.0 1,953,426 - sprT MCAODC_09810 0.83 +0.5 1,953,450 + sprT MCAODC_09810 0.89 -0.8 1,953,450 + sprT MCAODC_09810 0.89 +0.7 1,953,450 + sprT MCAODC_09810 0.89 -1.1 1,953,556 + -0.8 1,953,557 - +1.2 1,953,649 + -1.0 1,953,650 - -0.1 1,953,667 + -0.2 1,953,668 - -1.5 1,953,668 - +0.8 1,953,676 + +0.6 1,953,676 + +0.4 1,953,677 - -1.4 1,953,677 - +0.3 1,953,731 - +1.3 1,953,766 + galP MCAODC_09815 0.10 +0.1 1,953,766 + galP MCAODC_09815 0.10 +0.2 1,953,766 + galP MCAODC_09815 0.10 -0.1 1,953,767 - galP MCAODC_09815 0.11 +0.1 1,953,767 - galP MCAODC_09815 0.11 -0.2 1,953,767 - galP MCAODC_09815 0.11 -0.2 1,953,767 - galP MCAODC_09815 0.11 -0.3 1,953,767 - galP MCAODC_09815 0.11 +1.7 1,953,770 - galP MCAODC_09815 0.11 -0.7 1,953,940 + galP MCAODC_09815 0.23 +2.1 1,953,940 + galP MCAODC_09815 0.23 +0.2 1,953,941 - galP MCAODC_09815 0.23 +0.4 1,953,941 - galP MCAODC_09815 0.23 +1.1 1,953,941 - galP MCAODC_09815 0.23 +0.2 1,953,941 - galP MCAODC_09815 0.23 +0.4 1,953,941 - galP MCAODC_09815 0.23 +0.4 1,953,970 - galP MCAODC_09815 0.25 -0.6 1,953,997 + galP MCAODC_09815 0.27 +0.4 1,953,997 + galP MCAODC_09815 0.27 -1.3 1,954,009 + galP MCAODC_09815 0.28 +0.3 1,954,025 - galP MCAODC_09815 0.29 -0.1 1,954,066 + galP MCAODC_09815 0.32 -2.1 1,954,112 + galP MCAODC_09815 0.35 -0.0 1,954,112 + galP MCAODC_09815 0.35 +0.7 1,954,112 + galP MCAODC_09815 0.35 -1.1 1,954,113 - galP MCAODC_09815 0.35 +0.8 1,954,113 - galP MCAODC_09815 0.35 -1.1 1,954,165 + galP MCAODC_09815 0.39 +0.0 1,954,165 + galP MCAODC_09815 0.39 +1.1 1,954,165 + galP MCAODC_09815 0.39 +0.0 1,954,166 - galP MCAODC_09815 0.39 +0.7 1,954,166 - galP MCAODC_09815 0.39 +0.5 1,954,168 - galP MCAODC_09815 0.39 -1.6 1,954,168 - galP MCAODC_09815 0.39 -0.1 1,954,200 + galP MCAODC_09815 0.42 -0.1 1,954,200 + galP MCAODC_09815 0.42 +0.3 1,954,201 - galP MCAODC_09815 0.42 -0.2 1,954,201 - galP MCAODC_09815 0.42 -0.6 1,954,201 - galP MCAODC_09815 0.42 +0.4 1,954,201 - galP MCAODC_09815 0.42 -0.1 1,954,235 + galP MCAODC_09815 0.44 -0.3 1,954,236 - galP MCAODC_09815 0.44 -0.6 1,954,236 - galP MCAODC_09815 0.44 -2.2 1,954,247 + galP MCAODC_09815 0.45 -0.2 1,954,279 + galP MCAODC_09815 0.47 +0.4 1,954,279 + galP MCAODC_09815 0.47 +0.6 1,954,279 + galP MCAODC_09815 0.47 +0.2 1,954,279 + galP MCAODC_09815 0.47 -0.1 1,954,280 - galP MCAODC_09815 0.47 -3.3 1,954,280 - galP MCAODC_09815 0.47 -0.3 1,954,280 - galP MCAODC_09815 0.47 +0.2 1,954,289 - galP MCAODC_09815 0.48 -2.3 1,954,312 + galP MCAODC_09815 0.50 -0.3 1,954,313 - galP MCAODC_09815 0.50 -1.1 1,954,483 + galP MCAODC_09815 0.62 +0.7 1,954,483 + galP MCAODC_09815 0.62 +1.1 1,954,484 - galP MCAODC_09815 0.62 -1.9
Or see this region's nucleotide sequence