Strain Fitness in Escherichia coli ECRC101 around MCAODC_04955

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcyaA and hemC are separated by 365 nucleotideshemC and hemD overlap by 4 nucleotideshemD and hemX are separated by 21 nucleotides MCAODC_04950: cyaA - class I adenylate cyclase, at 998,793 to 1,001,339 cyaA MCAODC_04955: hemC - hydroxymethylbilane synthase, at 1,001,705 to 1,002,667 hemC MCAODC_04960: hemD - uroporphyrinogen-III synthase, at 1,002,664 to 1,003,404 hemD MCAODC_04965: hemX - uroporphyrinogen-III C-methyltransferase, at 1,003,426 to 1,004,655 hemX Position (kb) 1001 1002 1003Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1001.422 kb on - strandat 1001.540 kb on + strandat 1001.540 kb on + strandat 1001.544 kb on + strandat 1001.544 kb on + strandat 1001.544 kb on + strandat 1001.544 kb on + strandat 1001.544 kb on + strandat 1001.545 kb on - strandat 1001.545 kb on - strandat 1001.545 kb on - strandat 1001.545 kb on - strandat 1001.552 kb on + strandat 1001.552 kb on + strandat 1001.553 kb on - strandat 1001.553 kb on - strandat 1001.553 kb on - strandat 1001.553 kb on - strandat 1001.562 kb on + strandat 1001.562 kb on + strandat 1001.571 kb on + strandat 1001.583 kb on + strandat 1001.583 kb on + strandat 1001.584 kb on - strandat 1001.649 kb on + strandat 1001.649 kb on + strandat 1001.650 kb on - strandat 1001.690 kb on + strandat 1001.690 kb on + strandat 1001.709 kb on + strandat 1002.644 kb on + strandat 1002.644 kb on + strandat 1003.388 kb on + strandat 1003.388 kb on + strandat 1003.397 kb on + strandat 1003.397 kb on + strandat 1003.397 kb on + strandat 1003.397 kb on + strandat 1003.398 kb on - strandat 1003.398 kb on - strandat 1003.402 kb on + strandat 1003.402 kb on + strandat 1003.402 kb on + strandat 1003.402 kb on + strandat 1003.402 kb on + strandat 1003.402 kb on + strandat 1003.403 kb on - strandat 1003.518 kb on + strandat 1003.518 kb on + strandat 1003.561 kb on - strand, within hemXat 1003.588 kb on + strand, within hemXat 1003.588 kb on + strand, within hemXat 1003.589 kb on - strand, within hemXat 1003.589 kb on - strand, within hemXat 1003.589 kb on - strand, within hemXat 1003.600 kb on - strand, within hemX

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,001,422 - -0.9
1,001,540 + +0.1
1,001,540 + -0.7
1,001,544 + -1.0
1,001,544 + -2.9
1,001,544 + -0.3
1,001,544 + +0.8
1,001,544 + -2.0
1,001,545 - -0.2
1,001,545 - -0.9
1,001,545 - -0.6
1,001,545 - -1.0
1,001,552 + -0.1
1,001,552 + -0.2
1,001,553 - +1.4
1,001,553 - +0.4
1,001,553 - -1.5
1,001,553 - +1.0
1,001,562 + +0.1
1,001,562 + -0.4
1,001,571 + +0.3
1,001,583 + -0.0
1,001,583 + +0.3
1,001,584 - +0.8
1,001,649 + +0.6
1,001,649 + -0.4
1,001,650 - +0.2
1,001,690 + -0.2
1,001,690 + +0.1
1,001,709 + +0.0
1,002,644 + -1.6
1,002,644 + +1.3
1,003,388 + -1.7
1,003,388 + +0.2
1,003,397 + -1.6
1,003,397 + +0.3
1,003,397 + -0.1
1,003,397 + +0.1
1,003,398 - -2.7
1,003,398 - +0.6
1,003,402 + -0.3
1,003,402 + +1.3
1,003,402 + -1.8
1,003,402 + -1.4
1,003,402 + +1.8
1,003,402 + -1.3
1,003,403 - -0.5
1,003,518 + -1.3
1,003,518 + -1.7
1,003,561 - hemX MCAODC_04965 0.11 -0.9
1,003,588 + hemX MCAODC_04965 0.13 -0.4
1,003,588 + hemX MCAODC_04965 0.13 -2.6
1,003,589 - hemX MCAODC_04965 0.13 +0.3
1,003,589 - hemX MCAODC_04965 0.13 +0.7
1,003,589 - hemX MCAODC_04965 0.13 +0.1
1,003,600 - hemX MCAODC_04965 0.14 -2.3

Or see this region's nucleotide sequence