Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glnG and MCAODC_04615 are separated by 111 nucleotides MCAODC_04615 and hemN are separated by 189 nucleotides hemN and yihI are separated by 188 nucleotides yihI and yihI are separated by 207 nucleotides
MCAODC_04610: glnG - nitrogen regulation protein NR(I), at 934,961 to 936,370
glnG
MCAODC_04615: MCAODC_04615 - Uncharacterized protein YshB, at 936,482 to 936,592
_04615
MCAODC_04620: hemN - oxygen-independent coproporphyrinogen III oxidase, at 936,782 to 938,155
hemN
MCAODC_04625: yihI - Der GTPase-activating protein YihI, at 938,344 to 938,850
yihI
MCAODC_04635: yihI - Der GTPase-activating protein YihI, at 939,058 to 939,135
yihI
Position (kb) 936
937
938
939 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 935.833 kb on + strand, within glnG at 935.834 kb on - strand, within glnG at 935.834 kb on - strand, within glnG at 935.834 kb on - strand, within glnG at 935.911 kb on + strand, within glnG at 935.911 kb on + strand, within glnG at 935.912 kb on - strand, within glnG at 935.964 kb on + strand, within glnG at 935.965 kb on - strand, within glnG at 935.965 kb on - strand, within glnG at 936.140 kb on - strand, within glnG at 936.280 kb on + strand at 936.281 kb on - strand at 936.343 kb on + strand at 936.397 kb on + strand at 936.398 kb on - strand at 936.418 kb on - strand at 936.429 kb on + strand at 936.429 kb on + strand at 936.430 kb on - strand at 936.441 kb on - strand at 936.482 kb on - strand at 936.482 kb on - strand at 936.482 kb on - strand at 936.496 kb on - strand, within MCAODC_04615 at 936.499 kb on + strand, within MCAODC_04615 at 936.500 kb on - strand, within MCAODC_04615 at 936.587 kb on - strand at 936.587 kb on - strand at 936.587 kb on - strand at 936.754 kb on - strand at 936.760 kb on + strand at 936.783 kb on + strand at 936.783 kb on + strand at 936.783 kb on + strand at 936.783 kb on + strand at 936.784 kb on - strand at 936.784 kb on - strand at 936.828 kb on + strand at 936.829 kb on - strand at 936.829 kb on - strand at 936.829 kb on - strand at 936.829 kb on - strand at 936.829 kb on - strand at 936.832 kb on + strand at 936.832 kb on + strand at 936.832 kb on + strand at 936.887 kb on + strand at 936.887 kb on + strand at 936.961 kb on - strand, within hemN at 936.961 kb on - strand, within hemN at 936.994 kb on + strand, within hemN at 937.002 kb on + strand, within hemN at 937.034 kb on - strand, within hemN at 937.052 kb on - strand, within hemN at 937.076 kb on - strand, within hemN at 937.116 kb on + strand, within hemN at 937.117 kb on - strand, within hemN at 937.117 kb on - strand, within hemN at 937.119 kb on + strand, within hemN at 937.119 kb on + strand, within hemN at 937.120 kb on - strand, within hemN at 937.149 kb on + strand, within hemN at 937.431 kb on + strand, within hemN at 937.431 kb on + strand, within hemN at 937.431 kb on + strand, within hemN at 937.432 kb on - strand, within hemN at 937.432 kb on - strand, within hemN at 937.432 kb on - strand, within hemN at 937.435 kb on + strand, within hemN at 937.435 kb on + strand, within hemN at 937.435 kb on + strand, within hemN at 937.435 kb on + strand, within hemN at 937.436 kb on - strand, within hemN at 937.436 kb on - strand, within hemN at 937.460 kb on + strand, within hemN at 937.546 kb on + strand, within hemN at 937.546 kb on + strand, within hemN at 937.546 kb on + strand, within hemN at 937.547 kb on - strand, within hemN at 937.547 kb on - strand, within hemN at 937.547 kb on - strand, within hemN at 937.547 kb on - strand, within hemN at 937.571 kb on - strand, within hemN at 937.571 kb on - strand, within hemN at 937.586 kb on - strand, within hemN at 937.798 kb on + strand, within hemN at 937.799 kb on - strand, within hemN at 937.799 kb on - strand, within hemN at 937.802 kb on - strand, within hemN at 937.806 kb on + strand, within hemN at 937.806 kb on + strand, within hemN at 937.807 kb on - strand, within hemN at 937.967 kb on - strand, within hemN at 937.982 kb on - strand, within hemN at 937.985 kb on + strand, within hemN at 937.985 kb on + strand, within hemN at 937.985 kb on + strand, within hemN at 937.985 kb on + strand, within hemN at 937.985 kb on + strand, within hemN at 937.985 kb on + strand, within hemN at 937.985 kb on + strand, within hemN at 937.986 kb on - strand, within hemN at 937.986 kb on - strand, within hemN at 937.986 kb on - strand, within hemN at 937.986 kb on - strand, within hemN at 937.986 kb on - strand, within hemN at 937.986 kb on - strand, within hemN at 937.986 kb on - strand, within hemN at 937.986 kb on - strand, within hemN at 937.986 kb on - strand, within hemN at 937.986 kb on - strand, within hemN at 937.986 kb on - strand, within hemN at 937.986 kb on - strand, within hemN at 937.986 kb on - strand, within hemN at 937.986 kb on - strand, within hemN at 937.989 kb on + strand, within hemN at 937.989 kb on + strand, within hemN at 938.030 kb on + strand at 938.088 kb on + strand at 938.088 kb on + strand at 938.088 kb on + strand at 938.088 kb on + strand at 938.088 kb on + strand at 938.089 kb on - strand at 938.103 kb on + strand at 938.104 kb on - strand at 938.104 kb on - strand at 938.107 kb on + strand at 938.107 kb on + strand at 938.108 kb on - strand at 938.108 kb on - strand at 938.110 kb on - strand at 938.110 kb on - strand at 938.147 kb on + strand at 938.263 kb on + strand at 938.264 kb on - strand at 938.275 kb on + strand at 938.288 kb on + strand at 938.288 kb on + strand at 938.288 kb on + strand at 938.289 kb on - strand at 938.293 kb on + strand at 938.293 kb on + strand at 938.293 kb on + strand at 938.293 kb on + strand at 938.293 kb on + strand at 938.293 kb on + strand at 938.293 kb on + strand at 938.294 kb on - strand at 938.294 kb on - strand at 938.294 kb on - strand at 938.294 kb on - strand at 938.294 kb on - strand at 938.294 kb on - strand at 938.294 kb on - strand at 938.294 kb on - strand at 938.294 kb on - strand at 938.295 kb on + strand at 938.295 kb on + strand at 938.296 kb on - strand at 938.308 kb on + strand at 938.345 kb on + strand at 938.346 kb on - strand at 938.414 kb on + strand, within yihI at 938.414 kb on + strand, within yihI at 938.461 kb on - strand, within yihI at 938.548 kb on + strand, within yihI at 938.548 kb on + strand, within yihI at 938.549 kb on - strand, within yihI at 938.552 kb on - strand, within yihI at 938.580 kb on + strand, within yihI at 938.580 kb on + strand, within yihI at 938.580 kb on + strand, within yihI at 938.581 kb on - strand, within yihI at 938.658 kb on + strand, within yihI at 938.659 kb on - strand, within yihI at 938.659 kb on - strand, within yihI at 938.850 kb on + strand at 938.883 kb on + strand at 938.883 kb on + strand at 938.883 kb on + strand at 938.884 kb on - strand at 938.937 kb on - strand at 938.937 kb on - strand at 938.964 kb on - strand at 938.980 kb on + strand at 938.980 kb on + strand at 938.980 kb on + strand at 938.980 kb on + strand at 938.981 kb on - strand at 938.981 kb on - strand at 938.981 kb on - strand at 939.055 kb on + strand at 939.059 kb on + strand at 939.059 kb on + strand at 939.059 kb on + strand at 939.059 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 935,833 + glnG MCAODC_04610 0.62 -0.1 935,834 - glnG MCAODC_04610 0.62 +1.9 935,834 - glnG MCAODC_04610 0.62 +1.1 935,834 - glnG MCAODC_04610 0.62 -4.3 935,911 + glnG MCAODC_04610 0.67 +0.3 935,911 + glnG MCAODC_04610 0.67 -0.1 935,912 - glnG MCAODC_04610 0.67 +1.1 935,964 + glnG MCAODC_04610 0.71 +0.7 935,965 - glnG MCAODC_04610 0.71 -1.0 935,965 - glnG MCAODC_04610 0.71 -0.7 936,140 - glnG MCAODC_04610 0.84 -0.2 936,280 + -1.2 936,281 - +0.2 936,343 + -0.6 936,397 + -1.0 936,398 - +0.7 936,418 - +1.4 936,429 + +0.7 936,429 + +0.8 936,430 - +0.5 936,441 - -1.6 936,482 - -1.1 936,482 - +0.2 936,482 - +1.8 936,496 - MCAODC_04615 0.13 -0.6 936,499 + MCAODC_04615 0.15 +0.2 936,500 - MCAODC_04615 0.16 +2.8 936,587 - +1.1 936,587 - +1.8 936,587 - -1.4 936,754 - -0.1 936,760 + -2.3 936,783 + -0.1 936,783 + +1.1 936,783 + -0.0 936,783 + -0.1 936,784 - -0.5 936,784 - +0.3 936,828 + -2.0 936,829 - +0.3 936,829 - +1.8 936,829 - -1.4 936,829 - -0.1 936,829 - -1.2 936,832 + -1.8 936,832 + +0.3 936,832 + +1.9 936,887 + -1.5 936,887 + +2.2 936,961 - hemN MCAODC_04620 0.13 -1.0 936,961 - hemN MCAODC_04620 0.13 +0.3 936,994 + hemN MCAODC_04620 0.15 +0.4 937,002 + hemN MCAODC_04620 0.16 -1.6 937,034 - hemN MCAODC_04620 0.18 +0.7 937,052 - hemN MCAODC_04620 0.20 +0.6 937,076 - hemN MCAODC_04620 0.21 -0.8 937,116 + hemN MCAODC_04620 0.24 -1.3 937,117 - hemN MCAODC_04620 0.24 +0.3 937,117 - hemN MCAODC_04620 0.24 -1.9 937,119 + hemN MCAODC_04620 0.25 +1.2 937,119 + hemN MCAODC_04620 0.25 +0.1 937,120 - hemN MCAODC_04620 0.25 +1.3 937,149 + hemN MCAODC_04620 0.27 -0.0 937,431 + hemN MCAODC_04620 0.47 -0.0 937,431 + hemN MCAODC_04620 0.47 -0.7 937,431 + hemN MCAODC_04620 0.47 +1.3 937,432 - hemN MCAODC_04620 0.47 +0.3 937,432 - hemN MCAODC_04620 0.47 +0.1 937,432 - hemN MCAODC_04620 0.47 -0.3 937,435 + hemN MCAODC_04620 0.48 -0.2 937,435 + hemN MCAODC_04620 0.48 -0.9 937,435 + hemN MCAODC_04620 0.48 -2.9 937,435 + hemN MCAODC_04620 0.48 +0.5 937,436 - hemN MCAODC_04620 0.48 -1.7 937,436 - hemN MCAODC_04620 0.48 +0.6 937,460 + hemN MCAODC_04620 0.49 +0.2 937,546 + hemN MCAODC_04620 0.56 +0.0 937,546 + hemN MCAODC_04620 0.56 -3.0 937,546 + hemN MCAODC_04620 0.56 +1.2 937,547 - hemN MCAODC_04620 0.56 +1.8 937,547 - hemN MCAODC_04620 0.56 +1.0 937,547 - hemN MCAODC_04620 0.56 +0.4 937,547 - hemN MCAODC_04620 0.56 -1.3 937,571 - hemN MCAODC_04620 0.57 -1.7 937,571 - hemN MCAODC_04620 0.57 +0.6 937,586 - hemN MCAODC_04620 0.59 +0.2 937,798 + hemN MCAODC_04620 0.74 -0.5 937,799 - hemN MCAODC_04620 0.74 -1.2 937,799 - hemN MCAODC_04620 0.74 +1.3 937,802 - hemN MCAODC_04620 0.74 -0.4 937,806 + hemN MCAODC_04620 0.75 +0.8 937,806 + hemN MCAODC_04620 0.75 +3.9 937,807 - hemN MCAODC_04620 0.75 +0.6 937,967 - hemN MCAODC_04620 0.86 -1.1 937,982 - hemN MCAODC_04620 0.87 +0.2 937,985 + hemN MCAODC_04620 0.88 +0.1 937,985 + hemN MCAODC_04620 0.88 -0.7 937,985 + hemN MCAODC_04620 0.88 -1.2 937,985 + hemN MCAODC_04620 0.88 +2.6 937,985 + hemN MCAODC_04620 0.88 +0.8 937,985 + hemN MCAODC_04620 0.88 -0.1 937,985 + hemN MCAODC_04620 0.88 +0.6 937,986 - hemN MCAODC_04620 0.88 +0.4 937,986 - hemN MCAODC_04620 0.88 -1.2 937,986 - hemN MCAODC_04620 0.88 +2.5 937,986 - hemN MCAODC_04620 0.88 +1.9 937,986 - hemN MCAODC_04620 0.88 +1.5 937,986 - hemN MCAODC_04620 0.88 +0.8 937,986 - hemN MCAODC_04620 0.88 +1.3 937,986 - hemN MCAODC_04620 0.88 -0.1 937,986 - hemN MCAODC_04620 0.88 +0.7 937,986 - hemN MCAODC_04620 0.88 -0.3 937,986 - hemN MCAODC_04620 0.88 +0.9 937,986 - hemN MCAODC_04620 0.88 -1.9 937,986 - hemN MCAODC_04620 0.88 -2.4 937,986 - hemN MCAODC_04620 0.88 +0.4 937,989 + hemN MCAODC_04620 0.88 +0.4 937,989 + hemN MCAODC_04620 0.88 +0.2 938,030 + +0.4 938,088 + -0.9 938,088 + +0.4 938,088 + -0.8 938,088 + +0.7 938,088 + +1.8 938,089 - +0.6 938,103 + +0.9 938,104 - +1.3 938,104 - +1.0 938,107 + +1.9 938,107 + +1.2 938,108 - +0.2 938,108 - -1.6 938,110 - +1.4 938,110 - -0.2 938,147 + +0.7 938,263 + +0.4 938,264 - -0.1 938,275 + -0.5 938,288 + -0.7 938,288 + +1.3 938,288 + -0.6 938,289 - -1.1 938,293 + -0.1 938,293 + +0.8 938,293 + -0.0 938,293 + -0.3 938,293 + +0.3 938,293 + -2.5 938,293 + +0.3 938,294 - -0.7 938,294 - -0.1 938,294 - +2.3 938,294 - +0.6 938,294 - +1.5 938,294 - +0.6 938,294 - +1.0 938,294 - +0.3 938,294 - +0.9 938,295 + +1.3 938,295 + -0.4 938,296 - -0.1 938,308 + +0.8 938,345 + -0.9 938,346 - -3.7 938,414 + yihI MCAODC_04625 0.14 -1.0 938,414 + yihI MCAODC_04625 0.14 +0.5 938,461 - yihI MCAODC_04625 0.23 +0.2 938,548 + yihI MCAODC_04625 0.40 +0.7 938,548 + yihI MCAODC_04625 0.40 -3.2 938,549 - yihI MCAODC_04625 0.40 -0.4 938,552 - yihI MCAODC_04625 0.41 +1.1 938,580 + yihI MCAODC_04625 0.47 +0.4 938,580 + yihI MCAODC_04625 0.47 +0.3 938,580 + yihI MCAODC_04625 0.47 +1.0 938,581 - yihI MCAODC_04625 0.47 +0.4 938,658 + yihI MCAODC_04625 0.62 +1.7 938,659 - yihI MCAODC_04625 0.62 +0.2 938,659 - yihI MCAODC_04625 0.62 +0.8 938,850 + -1.3 938,883 + +0.1 938,883 + +0.5 938,883 + +0.7 938,884 - +0.7 938,937 - -1.6 938,937 - +0.3 938,964 - -0.2 938,980 + +0.6 938,980 + -0.1 938,980 + -1.7 938,980 + +0.3 938,981 - -0.2 938,981 - -0.8 938,981 - +0.2 939,055 + -0.8 939,059 + -1.9 939,059 + +1.4 939,059 + -1.2 939,059 + +0.8
Or see this region's nucleotide sequence