Strain Fitness in Escherichia coli ECRC101 around MCAODC_03935

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrpoB_R687H and rplL are separated by 319 nucleotidesrplL and rplJ are separated by 66 nucleotidesrplJ and rplA are separated by 291 nucleotidesrplA and rplK are separated by 3 nucleotides MCAODC_03920: rpoB_R687H - DNA-directed RNA polymerase subunit beta RpoB, at 791,983 to 796,011 _R687H MCAODC_03930: rplL - 50S ribosomal protein L7/L12, at 796,331 to 796,696 rplL MCAODC_03935: rplJ - 50S ribosomal protein L10, at 796,763 to 797,260 rplJ MCAODC_03940: rplA - 50S ribosomal protein L1, at 797,552 to 798,256 rplA MCAODC_03945: rplK - 50S ribosomal protein L11, at 798,260 to 798,688 rplK Position (kb) 796 797 798Strain fitness (log2 ratio) -2 -1 0 1at 796.180 kb on - strandat 796.183 kb on - strandat 796.222 kb on - strandat 797.506 kb on - strandat 797.506 kb on - strandat 797.545 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
796,180 - +1.5
796,183 - +0.9
796,222 - +1.4
797,506 - +0.5
797,506 - +0.1
797,545 - -1.8

Or see this region's nucleotide sequence