Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lomR and MCAODC_03500 are separated by 67 nucleotides MCAODC_03500 and MCAODC_03505 are separated by 86 nucleotides MCAODC_03505 and yfdR are separated by 127 nucleotides yfdR and MCAODC_03515 overlap by 10 nucleotides
MCAODC_03495: lomR - Ail/Lom family protein, at 704,656 to 705,255
lomR
MCAODC_03500: MCAODC_03500 - phage tail protein, at 705,323 to 705,976
_03500
MCAODC_03505: MCAODC_03505 - CPS-53 (KpLE1) prophage protein, at 706,063 to 706,449
_03505
MCAODC_03510: yfdR - 5'-deoxynucleotidase, at 706,577 to 707,113
yfdR
MCAODC_03515: MCAODC_03515 - Eae protein, at 707,104 to 707,454
_03515
Position (kb) 706
707 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 705.382 kb on + strand at 705.562 kb on + strand, within MCAODC_03500 at 705.562 kb on + strand, within MCAODC_03500 at 705.562 kb on + strand, within MCAODC_03500 at 705.562 kb on + strand, within MCAODC_03500 at 705.568 kb on + strand, within MCAODC_03500 at 706.057 kb on + strand at 706.057 kb on + strand at 706.078 kb on - strand at 706.165 kb on - strand, within MCAODC_03505 at 706.225 kb on - strand, within MCAODC_03505 at 706.339 kb on - strand, within MCAODC_03505 at 706.493 kb on + strand at 706.494 kb on - strand at 706.505 kb on + strand at 706.534 kb on - strand at 706.562 kb on + strand at 706.562 kb on + strand at 706.563 kb on - strand at 706.563 kb on - strand at 706.630 kb on + strand at 706.676 kb on - strand, within yfdR at 706.776 kb on + strand, within yfdR at 706.800 kb on - strand, within yfdR at 706.800 kb on - strand, within yfdR at 706.844 kb on + strand, within yfdR at 706.845 kb on - strand, within yfdR at 706.845 kb on - strand, within yfdR at 706.845 kb on - strand, within yfdR at 706.845 kb on - strand, within yfdR at 706.846 kb on + strand, within yfdR at 706.847 kb on - strand, within yfdR at 706.906 kb on + strand, within yfdR at 706.907 kb on - strand, within yfdR at 706.925 kb on + strand, within yfdR at 706.936 kb on + strand, within yfdR at 706.936 kb on + strand, within yfdR at 706.936 kb on + strand, within yfdR at 706.937 kb on - strand, within yfdR at 706.937 kb on - strand, within yfdR at 706.995 kb on + strand, within yfdR at 707.047 kb on + strand, within yfdR at 707.047 kb on + strand, within yfdR at 707.047 kb on + strand, within yfdR at 707.047 kb on + strand, within yfdR at 707.047 kb on + strand, within yfdR at 707.068 kb on + strand at 707.081 kb on - strand at 707.097 kb on + strand at 707.098 kb on - strand at 707.191 kb on + strand, within MCAODC_03515 at 707.191 kb on + strand, within MCAODC_03515 at 707.217 kb on - strand, within MCAODC_03515 at 707.217 kb on - strand, within MCAODC_03515 at 707.217 kb on - strand, within MCAODC_03515 at 707.241 kb on + strand, within MCAODC_03515 at 707.241 kb on + strand, within MCAODC_03515 at 707.242 kb on - strand, within MCAODC_03515 at 707.244 kb on + strand, within MCAODC_03515 at 707.244 kb on + strand, within MCAODC_03515 at 707.244 kb on + strand, within MCAODC_03515 at 707.245 kb on - strand, within MCAODC_03515 at 707.245 kb on - strand, within MCAODC_03515 at 707.245 kb on - strand, within MCAODC_03515 at 707.245 kb on - strand, within MCAODC_03515 at 707.245 kb on - strand, within MCAODC_03515 at 707.245 kb on - strand, within MCAODC_03515 at 707.245 kb on - strand, within MCAODC_03515 at 707.245 kb on - strand, within MCAODC_03515 at 707.245 kb on - strand, within MCAODC_03515 at 707.245 kb on - strand, within MCAODC_03515 at 707.245 kb on - strand, within MCAODC_03515 at 707.245 kb on - strand, within MCAODC_03515 at 707.248 kb on + strand, within MCAODC_03515 at 707.249 kb on - strand, within MCAODC_03515 at 707.249 kb on - strand, within MCAODC_03515 at 707.290 kb on - strand, within MCAODC_03515 at 707.290 kb on - strand, within MCAODC_03515 at 707.296 kb on - strand, within MCAODC_03515 at 707.354 kb on + strand, within MCAODC_03515 at 707.354 kb on + strand, within MCAODC_03515 at 707.354 kb on + strand, within MCAODC_03515 at 707.355 kb on - strand, within MCAODC_03515 at 707.358 kb on + strand, within MCAODC_03515 at 707.359 kb on - strand, within MCAODC_03515 at 707.359 kb on - strand, within MCAODC_03515 at 707.359 kb on - strand, within MCAODC_03515 at 707.396 kb on - strand, within MCAODC_03515
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 705,382 + +0.8 705,562 + MCAODC_03500 0.37 -0.6 705,562 + MCAODC_03500 0.37 -0.0 705,562 + MCAODC_03500 0.37 +0.3 705,562 + MCAODC_03500 0.37 +0.6 705,568 + MCAODC_03500 0.37 +0.4 706,057 + +0.5 706,057 + -0.1 706,078 - +0.1 706,165 - MCAODC_03505 0.26 +0.2 706,225 - MCAODC_03505 0.42 -0.6 706,339 - MCAODC_03505 0.71 -1.0 706,493 + -0.7 706,494 - +1.2 706,505 + -0.2 706,534 - +0.1 706,562 + -2.7 706,562 + +0.6 706,563 - -0.6 706,563 - +0.9 706,630 + +0.5 706,676 - yfdR MCAODC_03510 0.18 -3.1 706,776 + yfdR MCAODC_03510 0.37 +0.0 706,800 - yfdR MCAODC_03510 0.42 -0.2 706,800 - yfdR MCAODC_03510 0.42 +1.1 706,844 + yfdR MCAODC_03510 0.50 +0.9 706,845 - yfdR MCAODC_03510 0.50 -0.4 706,845 - yfdR MCAODC_03510 0.50 -0.1 706,845 - yfdR MCAODC_03510 0.50 +0.3 706,845 - yfdR MCAODC_03510 0.50 -0.5 706,846 + yfdR MCAODC_03510 0.50 +0.5 706,847 - yfdR MCAODC_03510 0.50 -0.2 706,906 + yfdR MCAODC_03510 0.61 -0.1 706,907 - yfdR MCAODC_03510 0.61 -0.2 706,925 + yfdR MCAODC_03510 0.65 -1.3 706,936 + yfdR MCAODC_03510 0.67 +0.3 706,936 + yfdR MCAODC_03510 0.67 +0.5 706,936 + yfdR MCAODC_03510 0.67 +0.3 706,937 - yfdR MCAODC_03510 0.67 +0.3 706,937 - yfdR MCAODC_03510 0.67 -1.1 706,995 + yfdR MCAODC_03510 0.78 +0.1 707,047 + yfdR MCAODC_03510 0.88 -0.1 707,047 + yfdR MCAODC_03510 0.88 -0.4 707,047 + yfdR MCAODC_03510 0.88 +0.5 707,047 + yfdR MCAODC_03510 0.88 +2.2 707,047 + yfdR MCAODC_03510 0.88 +0.6 707,068 + -3.2 707,081 - +0.2 707,097 + -0.0 707,098 - +0.3 707,191 + MCAODC_03515 0.25 -0.1 707,191 + MCAODC_03515 0.25 +1.0 707,217 - MCAODC_03515 0.32 +0.7 707,217 - MCAODC_03515 0.32 +0.2 707,217 - MCAODC_03515 0.32 -0.6 707,241 + MCAODC_03515 0.39 +0.5 707,241 + MCAODC_03515 0.39 -0.1 707,242 - MCAODC_03515 0.39 -0.7 707,244 + MCAODC_03515 0.40 +0.0 707,244 + MCAODC_03515 0.40 -1.1 707,244 + MCAODC_03515 0.40 +0.0 707,245 - MCAODC_03515 0.40 +0.6 707,245 - MCAODC_03515 0.40 +0.0 707,245 - MCAODC_03515 0.40 -0.7 707,245 - MCAODC_03515 0.40 +1.1 707,245 - MCAODC_03515 0.40 +0.0 707,245 - MCAODC_03515 0.40 -0.3 707,245 - MCAODC_03515 0.40 +0.0 707,245 - MCAODC_03515 0.40 -0.1 707,245 - MCAODC_03515 0.40 -1.4 707,245 - MCAODC_03515 0.40 +0.1 707,245 - MCAODC_03515 0.40 -0.4 707,245 - MCAODC_03515 0.40 +0.4 707,248 + MCAODC_03515 0.41 +1.0 707,249 - MCAODC_03515 0.41 -0.2 707,249 - MCAODC_03515 0.41 -1.2 707,290 - MCAODC_03515 0.53 -0.2 707,290 - MCAODC_03515 0.53 +0.2 707,296 - MCAODC_03515 0.55 -0.8 707,354 + MCAODC_03515 0.71 +1.3 707,354 + MCAODC_03515 0.71 -0.0 707,354 + MCAODC_03515 0.71 -0.6 707,355 - MCAODC_03515 0.72 -0.6 707,358 + MCAODC_03515 0.72 +0.8 707,359 - MCAODC_03515 0.73 +1.1 707,359 - MCAODC_03515 0.73 +0.4 707,359 - MCAODC_03515 0.73 -0.4 707,396 - MCAODC_03515 0.83 -0.1
Or see this region's nucleotide sequence