Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt adiY and adiC are separated by 136 nucleotides adiC and eptA are separated by 103 nucleotides
MCAODC_03065: adiY - DNA-binding transcriptional activator AdiY, at 621,687 to 622,448
adiY
MCAODC_03070: adiC - arginine/agmatine antiporter, at 622,585 to 623,922
adiC
MCAODC_03075: eptA - phosphoethanolamine transferase EptA, at 624,026 to 625,669
eptA
Position (kb) 622
623
624 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 621.616 kb on - strand at 621.680 kb on + strand at 621.681 kb on - strand at 621.686 kb on + strand at 621.686 kb on + strand at 621.687 kb on - strand at 621.713 kb on + strand at 621.714 kb on - strand at 621.714 kb on - strand at 621.767 kb on + strand, within adiY at 621.770 kb on + strand, within adiY at 621.771 kb on - strand, within adiY at 621.799 kb on + strand, within adiY at 621.857 kb on + strand, within adiY at 621.900 kb on - strand, within adiY at 621.932 kb on + strand, within adiY at 622.100 kb on - strand, within adiY at 622.110 kb on - strand, within adiY at 622.118 kb on + strand, within adiY at 622.181 kb on + strand, within adiY at 622.184 kb on + strand, within adiY at 622.185 kb on - strand, within adiY at 622.202 kb on - strand, within adiY at 622.255 kb on - strand, within adiY at 622.255 kb on - strand, within adiY at 622.257 kb on - strand, within adiY at 622.304 kb on - strand, within adiY at 622.322 kb on + strand, within adiY at 622.382 kb on + strand at 622.413 kb on + strand at 622.413 kb on + strand at 622.413 kb on + strand at 622.419 kb on - strand at 622.419 kb on - strand at 622.459 kb on + strand at 622.470 kb on + strand at 622.470 kb on + strand at 622.470 kb on + strand at 622.470 kb on + strand at 622.470 kb on + strand at 622.471 kb on - strand at 622.471 kb on - strand at 622.472 kb on + strand at 622.476 kb on - strand at 622.476 kb on - strand at 622.508 kb on + strand at 622.509 kb on - strand at 622.532 kb on + strand at 622.538 kb on - strand at 622.619 kb on + strand at 622.654 kb on - strand at 622.714 kb on + strand at 622.714 kb on + strand at 622.714 kb on + strand at 622.715 kb on - strand at 622.715 kb on - strand at 622.761 kb on - strand, within adiC at 622.761 kb on - strand, within adiC at 622.763 kb on - strand, within adiC at 622.804 kb on + strand, within adiC at 622.805 kb on - strand, within adiC at 622.805 kb on - strand, within adiC at 622.805 kb on - strand, within adiC at 622.810 kb on + strand, within adiC at 622.916 kb on - strand, within adiC at 622.919 kb on + strand, within adiC at 622.919 kb on + strand, within adiC at 622.919 kb on + strand, within adiC at 622.920 kb on - strand, within adiC at 622.920 kb on - strand, within adiC at 622.920 kb on - strand, within adiC at 622.924 kb on + strand, within adiC at 622.925 kb on - strand, within adiC at 622.925 kb on - strand, within adiC at 622.925 kb on - strand, within adiC at 623.084 kb on + strand, within adiC at 623.085 kb on - strand, within adiC at 623.116 kb on + strand, within adiC at 623.116 kb on + strand, within adiC at 623.116 kb on + strand, within adiC at 623.116 kb on + strand, within adiC at 623.116 kb on + strand, within adiC at 623.116 kb on + strand, within adiC at 623.117 kb on - strand, within adiC at 623.117 kb on - strand, within adiC at 623.170 kb on - strand, within adiC at 623.170 kb on - strand, within adiC at 623.170 kb on - strand, within adiC at 623.175 kb on + strand, within adiC at 623.175 kb on + strand, within adiC at 623.176 kb on - strand, within adiC at 623.182 kb on - strand, within adiC at 623.259 kb on + strand, within adiC at 623.261 kb on + strand, within adiC at 623.300 kb on - strand, within adiC at 623.300 kb on - strand, within adiC at 623.300 kb on - strand, within adiC at 623.300 kb on - strand, within adiC at 623.337 kb on + strand, within adiC at 623.444 kb on + strand, within adiC at 623.444 kb on + strand, within adiC at 623.445 kb on - strand, within adiC at 623.445 kb on - strand, within adiC at 623.445 kb on - strand, within adiC at 623.538 kb on + strand, within adiC at 623.569 kb on - strand, within adiC at 623.665 kb on - strand, within adiC at 623.665 kb on - strand, within adiC at 623.678 kb on - strand, within adiC at 623.699 kb on + strand, within adiC at 623.699 kb on + strand, within adiC at 623.727 kb on + strand, within adiC at 623.743 kb on + strand, within adiC at 623.744 kb on - strand, within adiC at 623.744 kb on - strand, within adiC at 623.744 kb on - strand, within adiC at 623.754 kb on + strand, within adiC at 623.755 kb on - strand, within adiC at 623.757 kb on + strand, within adiC at 623.814 kb on + strand at 623.815 kb on - strand at 623.854 kb on + strand at 623.854 kb on + strand at 623.855 kb on - strand at 623.855 kb on - strand at 623.855 kb on - strand at 623.855 kb on - strand at 623.866 kb on + strand at 623.867 kb on - strand at 623.867 kb on - strand at 623.897 kb on + strand at 623.897 kb on + strand at 623.898 kb on - strand at 623.898 kb on - strand at 623.898 kb on - strand at 623.898 kb on - strand at 623.898 kb on - strand at 623.920 kb on + strand at 623.920 kb on + strand at 623.921 kb on - strand at 623.921 kb on - strand at 623.945 kb on - strand at 623.958 kb on - strand at 623.965 kb on + strand at 623.965 kb on + strand at 623.965 kb on + strand at 623.966 kb on - strand at 623.977 kb on - strand at 623.995 kb on + strand at 623.996 kb on - strand at 623.996 kb on - strand at 624.042 kb on + strand at 624.093 kb on - strand at 624.095 kb on - strand at 624.100 kb on + strand at 624.100 kb on + strand at 624.100 kb on + strand at 624.163 kb on + strand at 624.168 kb on + strand at 624.169 kb on - strand at 624.195 kb on + strand, within eptA at 624.211 kb on + strand, within eptA at 624.211 kb on + strand, within eptA at 624.211 kb on + strand, within eptA at 624.212 kb on - strand, within eptA at 624.212 kb on - strand, within eptA at 624.214 kb on + strand, within eptA at 624.214 kb on + strand, within eptA at 624.215 kb on - strand, within eptA at 624.215 kb on - strand, within eptA at 624.228 kb on + strand, within eptA at 624.229 kb on - strand, within eptA at 624.229 kb on - strand, within eptA at 624.240 kb on + strand, within eptA at 624.248 kb on - strand, within eptA at 624.271 kb on + strand, within eptA at 624.296 kb on + strand, within eptA at 624.296 kb on + strand, within eptA at 624.297 kb on - strand, within eptA at 624.303 kb on + strand, within eptA at 624.311 kb on + strand, within eptA at 624.311 kb on + strand, within eptA at 624.312 kb on - strand, within eptA at 624.346 kb on + strand, within eptA at 624.349 kb on + strand, within eptA at 624.349 kb on + strand, within eptA at 624.350 kb on - strand, within eptA at 624.350 kb on - strand, within eptA at 624.350 kb on - strand, within eptA at 624.355 kb on + strand, within eptA at 624.399 kb on + strand, within eptA at 624.400 kb on - strand, within eptA at 624.400 kb on - strand, within eptA at 624.402 kb on + strand, within eptA at 624.402 kb on + strand, within eptA at 624.506 kb on - strand, within eptA at 624.520 kb on - strand, within eptA at 624.547 kb on - strand, within eptA at 624.551 kb on + strand, within eptA at 624.552 kb on - strand, within eptA at 624.552 kb on - strand, within eptA at 624.560 kb on + strand, within eptA at 624.560 kb on + strand, within eptA at 624.560 kb on + strand, within eptA at 624.561 kb on - strand, within eptA at 624.561 kb on - strand, within eptA at 624.604 kb on - strand, within eptA at 624.604 kb on - strand, within eptA at 624.641 kb on + strand, within eptA at 624.805 kb on + strand, within eptA at 624.837 kb on - strand, within eptA at 624.837 kb on - strand, within eptA at 624.837 kb on - strand, within eptA at 624.847 kb on + strand, within eptA at 624.917 kb on + strand, within eptA at 624.918 kb on - strand, within eptA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 621,616 - -0.1 621,680 + +0.1 621,681 - -0.7 621,686 + +0.0 621,686 + +0.5 621,687 - -1.1 621,713 + -1.3 621,714 - +0.4 621,714 - +1.2 621,767 + adiY MCAODC_03065 0.10 -0.3 621,770 + adiY MCAODC_03065 0.11 +0.6 621,771 - adiY MCAODC_03065 0.11 -0.2 621,799 + adiY MCAODC_03065 0.15 -0.9 621,857 + adiY MCAODC_03065 0.22 +0.2 621,900 - adiY MCAODC_03065 0.28 -1.3 621,932 + adiY MCAODC_03065 0.32 -0.8 622,100 - adiY MCAODC_03065 0.54 -3.4 622,110 - adiY MCAODC_03065 0.56 +0.3 622,118 + adiY MCAODC_03065 0.57 -0.5 622,181 + adiY MCAODC_03065 0.65 +0.3 622,184 + adiY MCAODC_03065 0.65 +1.2 622,185 - adiY MCAODC_03065 0.65 -1.0 622,202 - adiY MCAODC_03065 0.68 -1.5 622,255 - adiY MCAODC_03065 0.75 +0.3 622,255 - adiY MCAODC_03065 0.75 -0.3 622,257 - adiY MCAODC_03065 0.75 -0.5 622,304 - adiY MCAODC_03065 0.81 +0.7 622,322 + adiY MCAODC_03065 0.83 +0.4 622,382 + +0.4 622,413 + +1.1 622,413 + -0.3 622,413 + +0.5 622,419 - +1.5 622,419 - -0.3 622,459 + -0.2 622,470 + -1.1 622,470 + -0.2 622,470 + +1.2 622,470 + +1.0 622,470 + +0.7 622,471 - -0.4 622,471 - +1.3 622,472 + +0.9 622,476 - -1.7 622,476 - +0.5 622,508 + -0.2 622,509 - -1.3 622,532 + -2.2 622,538 - -2.6 622,619 + +0.4 622,654 - +0.6 622,714 + +0.5 622,714 + +0.2 622,714 + +0.2 622,715 - +0.8 622,715 - -2.8 622,761 - adiC MCAODC_03070 0.13 +0.1 622,761 - adiC MCAODC_03070 0.13 -1.2 622,763 - adiC MCAODC_03070 0.13 -0.5 622,804 + adiC MCAODC_03070 0.16 +0.1 622,805 - adiC MCAODC_03070 0.16 -0.2 622,805 - adiC MCAODC_03070 0.16 +0.0 622,805 - adiC MCAODC_03070 0.16 +0.3 622,810 + adiC MCAODC_03070 0.17 +0.9 622,916 - adiC MCAODC_03070 0.25 +0.6 622,919 + adiC MCAODC_03070 0.25 +0.0 622,919 + adiC MCAODC_03070 0.25 +0.5 622,919 + adiC MCAODC_03070 0.25 +1.1 622,920 - adiC MCAODC_03070 0.25 -0.4 622,920 - adiC MCAODC_03070 0.25 -0.5 622,920 - adiC MCAODC_03070 0.25 -2.1 622,924 + adiC MCAODC_03070 0.25 -1.4 622,925 - adiC MCAODC_03070 0.25 -0.2 622,925 - adiC MCAODC_03070 0.25 -0.4 622,925 - adiC MCAODC_03070 0.25 -0.2 623,084 + adiC MCAODC_03070 0.37 -1.3 623,085 - adiC MCAODC_03070 0.37 +0.1 623,116 + adiC MCAODC_03070 0.40 +0.3 623,116 + adiC MCAODC_03070 0.40 +0.6 623,116 + adiC MCAODC_03070 0.40 -1.9 623,116 + adiC MCAODC_03070 0.40 -0.2 623,116 + adiC MCAODC_03070 0.40 +0.1 623,116 + adiC MCAODC_03070 0.40 +0.4 623,117 - adiC MCAODC_03070 0.40 -0.2 623,117 - adiC MCAODC_03070 0.40 +0.1 623,170 - adiC MCAODC_03070 0.44 +0.3 623,170 - adiC MCAODC_03070 0.44 -0.4 623,170 - adiC MCAODC_03070 0.44 +1.0 623,175 + adiC MCAODC_03070 0.44 -0.2 623,175 + adiC MCAODC_03070 0.44 -1.8 623,176 - adiC MCAODC_03070 0.44 +2.1 623,182 - adiC MCAODC_03070 0.45 -1.1 623,259 + adiC MCAODC_03070 0.50 -0.5 623,261 + adiC MCAODC_03070 0.51 -0.3 623,300 - adiC MCAODC_03070 0.53 -0.3 623,300 - adiC MCAODC_03070 0.53 -1.1 623,300 - adiC MCAODC_03070 0.53 -0.3 623,300 - adiC MCAODC_03070 0.53 -2.7 623,337 + adiC MCAODC_03070 0.56 -0.0 623,444 + adiC MCAODC_03070 0.64 +0.4 623,444 + adiC MCAODC_03070 0.64 +0.2 623,445 - adiC MCAODC_03070 0.64 -0.4 623,445 - adiC MCAODC_03070 0.64 -0.1 623,445 - adiC MCAODC_03070 0.64 +0.3 623,538 + adiC MCAODC_03070 0.71 +0.1 623,569 - adiC MCAODC_03070 0.74 +0.5 623,665 - adiC MCAODC_03070 0.81 +0.5 623,665 - adiC MCAODC_03070 0.81 -0.3 623,678 - adiC MCAODC_03070 0.82 -1.0 623,699 + adiC MCAODC_03070 0.83 +0.9 623,699 + adiC MCAODC_03070 0.83 -0.4 623,727 + adiC MCAODC_03070 0.85 +0.2 623,743 + adiC MCAODC_03070 0.87 -0.0 623,744 - adiC MCAODC_03070 0.87 +1.0 623,744 - adiC MCAODC_03070 0.87 +1.8 623,744 - adiC MCAODC_03070 0.87 -1.0 623,754 + adiC MCAODC_03070 0.87 -0.8 623,755 - adiC MCAODC_03070 0.87 +0.3 623,757 + adiC MCAODC_03070 0.88 +1.1 623,814 + -0.2 623,815 - +0.1 623,854 + +0.8 623,854 + -0.1 623,855 - +2.0 623,855 - -0.3 623,855 - -1.2 623,855 - -0.2 623,866 + -0.6 623,867 - -0.2 623,867 - +0.4 623,897 + -0.8 623,897 + -0.2 623,898 - +1.4 623,898 - +0.4 623,898 - -0.6 623,898 - +2.5 623,898 - +1.0 623,920 + -0.1 623,920 + -0.7 623,921 - -2.7 623,921 - +0.2 623,945 - -1.2 623,958 - +0.4 623,965 + +0.1 623,965 + +0.5 623,965 + -1.6 623,966 - +0.1 623,977 - +1.4 623,995 + +1.0 623,996 - -0.2 623,996 - +1.9 624,042 + -1.2 624,093 - -2.3 624,095 - -0.6 624,100 + +0.2 624,100 + +0.3 624,100 + -0.1 624,163 + -0.8 624,168 + -0.0 624,169 - -0.5 624,195 + eptA MCAODC_03075 0.10 +0.1 624,211 + eptA MCAODC_03075 0.11 -0.5 624,211 + eptA MCAODC_03075 0.11 +0.7 624,211 + eptA MCAODC_03075 0.11 -1.1 624,212 - eptA MCAODC_03075 0.11 +0.7 624,212 - eptA MCAODC_03075 0.11 -0.4 624,214 + eptA MCAODC_03075 0.11 -0.1 624,214 + eptA MCAODC_03075 0.11 +0.3 624,215 - eptA MCAODC_03075 0.11 -1.3 624,215 - eptA MCAODC_03075 0.11 -0.7 624,228 + eptA MCAODC_03075 0.12 +0.8 624,229 - eptA MCAODC_03075 0.12 +1.0 624,229 - eptA MCAODC_03075 0.12 +0.0 624,240 + eptA MCAODC_03075 0.13 +0.3 624,248 - eptA MCAODC_03075 0.14 +0.3 624,271 + eptA MCAODC_03075 0.15 -0.9 624,296 + eptA MCAODC_03075 0.16 +0.8 624,296 + eptA MCAODC_03075 0.16 +0.8 624,297 - eptA MCAODC_03075 0.16 +0.7 624,303 + eptA MCAODC_03075 0.17 -2.0 624,311 + eptA MCAODC_03075 0.17 +1.3 624,311 + eptA MCAODC_03075 0.17 -0.0 624,312 - eptA MCAODC_03075 0.17 +0.2 624,346 + eptA MCAODC_03075 0.19 +0.5 624,349 + eptA MCAODC_03075 0.20 -1.6 624,349 + eptA MCAODC_03075 0.20 +1.4 624,350 - eptA MCAODC_03075 0.20 -0.1 624,350 - eptA MCAODC_03075 0.20 -0.4 624,350 - eptA MCAODC_03075 0.20 +0.3 624,355 + eptA MCAODC_03075 0.20 -0.4 624,399 + eptA MCAODC_03075 0.23 -1.3 624,400 - eptA MCAODC_03075 0.23 +1.1 624,400 - eptA MCAODC_03075 0.23 -0.7 624,402 + eptA MCAODC_03075 0.23 +1.2 624,402 + eptA MCAODC_03075 0.23 +0.9 624,506 - eptA MCAODC_03075 0.29 -0.0 624,520 - eptA MCAODC_03075 0.30 -0.4 624,547 - eptA MCAODC_03075 0.32 +0.6 624,551 + eptA MCAODC_03075 0.32 +1.1 624,552 - eptA MCAODC_03075 0.32 -0.7 624,552 - eptA MCAODC_03075 0.32 +0.4 624,560 + eptA MCAODC_03075 0.32 +0.2 624,560 + eptA MCAODC_03075 0.32 -0.0 624,560 + eptA MCAODC_03075 0.32 -0.4 624,561 - eptA MCAODC_03075 0.33 +2.3 624,561 - eptA MCAODC_03075 0.33 +0.3 624,604 - eptA MCAODC_03075 0.35 -0.2 624,604 - eptA MCAODC_03075 0.35 +0.5 624,641 + eptA MCAODC_03075 0.37 +0.5 624,805 + eptA MCAODC_03075 0.47 -0.2 624,837 - eptA MCAODC_03075 0.49 +1.1 624,837 - eptA MCAODC_03075 0.49 +1.5 624,837 - eptA MCAODC_03075 0.49 -0.6 624,847 + eptA MCAODC_03075 0.50 +2.6 624,917 + eptA MCAODC_03075 0.54 -0.4 624,918 - eptA MCAODC_03075 0.54 +2.9
Or see this region's nucleotide sequence