Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dcuS and dcuR overlap by 4 nucleotides dcuR and dcuB are separated by 570 nucleotides
MCAODC_03020: dcuS - Sensor histidine kinase DcuS, at 607,953 to 609,584
dcuS
MCAODC_03025: dcuR - two-component system response regulator DcuR, at 609,581 to 610,300
dcuR
MCAODC_03030: dcuB - anaerobic C4-dicarboxylate transporter DcuB, at 610,871 to 612,211
dcuB
Position (kb) 609
610
611 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 608.642 kb on + strand, within dcuS at 608.721 kb on + strand, within dcuS at 608.721 kb on + strand, within dcuS at 608.722 kb on - strand, within dcuS at 608.782 kb on + strand, within dcuS at 608.782 kb on + strand, within dcuS at 608.783 kb on - strand, within dcuS at 608.783 kb on - strand, within dcuS at 608.783 kb on - strand, within dcuS at 608.783 kb on - strand, within dcuS at 608.783 kb on - strand, within dcuS at 608.783 kb on - strand, within dcuS at 608.840 kb on + strand, within dcuS at 608.841 kb on - strand, within dcuS at 608.854 kb on + strand, within dcuS at 608.854 kb on + strand, within dcuS at 608.855 kb on - strand, within dcuS at 608.855 kb on - strand, within dcuS at 608.882 kb on + strand, within dcuS at 608.883 kb on - strand, within dcuS at 608.937 kb on - strand, within dcuS at 608.970 kb on + strand, within dcuS at 608.970 kb on + strand, within dcuS at 608.970 kb on + strand, within dcuS at 608.970 kb on + strand, within dcuS at 608.970 kb on + strand, within dcuS at 608.970 kb on + strand, within dcuS at 608.971 kb on - strand, within dcuS at 608.971 kb on - strand, within dcuS at 608.971 kb on - strand, within dcuS at 608.971 kb on - strand, within dcuS at 608.971 kb on - strand, within dcuS at 608.971 kb on - strand, within dcuS at 608.971 kb on - strand, within dcuS at 609.011 kb on + strand, within dcuS at 609.012 kb on - strand, within dcuS at 609.012 kb on - strand, within dcuS at 609.012 kb on - strand, within dcuS at 609.012 kb on - strand, within dcuS at 609.051 kb on + strand, within dcuS at 609.052 kb on - strand, within dcuS at 609.052 kb on - strand, within dcuS at 609.052 kb on - strand, within dcuS at 609.052 kb on - strand, within dcuS at 609.053 kb on + strand, within dcuS at 609.054 kb on - strand, within dcuS at 609.054 kb on - strand, within dcuS at 609.054 kb on - strand, within dcuS at 609.069 kb on + strand, within dcuS at 609.069 kb on + strand, within dcuS at 609.069 kb on + strand, within dcuS at 609.069 kb on + strand, within dcuS at 609.069 kb on + strand, within dcuS at 609.070 kb on - strand, within dcuS at 609.089 kb on + strand, within dcuS at 609.089 kb on + strand, within dcuS at 609.089 kb on + strand, within dcuS at 609.089 kb on + strand, within dcuS at 609.090 kb on - strand, within dcuS at 609.090 kb on - strand, within dcuS at 609.090 kb on - strand, within dcuS at 609.093 kb on + strand, within dcuS at 609.094 kb on - strand, within dcuS at 609.094 kb on - strand, within dcuS at 609.122 kb on + strand, within dcuS at 609.123 kb on - strand, within dcuS at 609.185 kb on - strand, within dcuS at 609.191 kb on + strand, within dcuS at 609.191 kb on + strand, within dcuS at 609.191 kb on + strand, within dcuS at 609.191 kb on + strand, within dcuS at 609.191 kb on + strand, within dcuS at 609.191 kb on + strand, within dcuS at 609.192 kb on - strand, within dcuS at 609.260 kb on + strand, within dcuS at 609.302 kb on - strand, within dcuS at 609.326 kb on + strand, within dcuS at 609.372 kb on - strand, within dcuS at 609.372 kb on - strand, within dcuS at 609.484 kb on + strand at 609.553 kb on + strand at 609.594 kb on + strand at 609.594 kb on + strand at 609.594 kb on + strand at 609.638 kb on + strand at 609.642 kb on + strand at 609.642 kb on + strand at 609.642 kb on + strand at 609.643 kb on - strand at 609.643 kb on - strand at 609.643 kb on - strand at 609.643 kb on - strand at 609.706 kb on + strand, within dcuR at 609.707 kb on - strand, within dcuR at 609.752 kb on + strand, within dcuR at 609.752 kb on + strand, within dcuR at 609.752 kb on + strand, within dcuR at 609.753 kb on - strand, within dcuR at 609.753 kb on - strand, within dcuR at 609.753 kb on - strand, within dcuR at 609.753 kb on - strand, within dcuR at 609.753 kb on - strand, within dcuR at 609.753 kb on - strand, within dcuR at 609.754 kb on + strand, within dcuR at 609.781 kb on - strand, within dcuR at 609.781 kb on - strand, within dcuR at 609.797 kb on - strand, within dcuR at 609.888 kb on - strand, within dcuR at 609.974 kb on + strand, within dcuR at 609.974 kb on + strand, within dcuR at 609.975 kb on - strand, within dcuR at 609.975 kb on - strand, within dcuR at 609.975 kb on - strand, within dcuR at 609.975 kb on - strand, within dcuR at 609.977 kb on + strand, within dcuR at 609.977 kb on + strand, within dcuR at 610.002 kb on + strand, within dcuR at 610.002 kb on + strand, within dcuR at 610.002 kb on + strand, within dcuR at 610.002 kb on + strand, within dcuR at 610.003 kb on - strand, within dcuR at 610.003 kb on - strand, within dcuR at 610.003 kb on - strand, within dcuR at 610.109 kb on + strand, within dcuR at 610.132 kb on - strand, within dcuR at 610.172 kb on + strand, within dcuR at 610.172 kb on + strand, within dcuR at 610.172 kb on + strand, within dcuR at 610.173 kb on - strand, within dcuR at 610.173 kb on - strand, within dcuR at 610.173 kb on - strand, within dcuR at 610.173 kb on - strand, within dcuR at 610.173 kb on - strand, within dcuR at 610.177 kb on + strand, within dcuR at 610.178 kb on - strand, within dcuR at 610.178 kb on - strand, within dcuR at 610.271 kb on + strand at 610.278 kb on + strand at 610.289 kb on + strand at 610.330 kb on + strand at 610.330 kb on + strand at 610.348 kb on + strand at 610.349 kb on - strand at 610.400 kb on + strand at 610.402 kb on + strand at 610.433 kb on + strand at 610.434 kb on - strand at 610.494 kb on - strand at 610.494 kb on - strand at 610.507 kb on + strand at 610.508 kb on - strand at 610.544 kb on - strand at 610.548 kb on + strand at 610.549 kb on - strand at 610.626 kb on - strand at 610.690 kb on + strand at 610.702 kb on + strand at 610.744 kb on + strand at 610.745 kb on - strand at 610.752 kb on - strand at 610.779 kb on + strand at 610.828 kb on + strand at 610.829 kb on - strand at 610.875 kb on + strand at 610.875 kb on + strand at 610.876 kb on - strand at 610.879 kb on + strand at 610.879 kb on + strand at 610.880 kb on - strand at 610.882 kb on + strand at 610.891 kb on + strand at 610.896 kb on + strand at 610.905 kb on + strand at 610.905 kb on + strand at 610.905 kb on + strand at 610.906 kb on - strand at 610.916 kb on + strand at 610.954 kb on - strand at 611.005 kb on + strand, within dcuB at 611.132 kb on + strand, within dcuB at 611.132 kb on + strand, within dcuB at 611.132 kb on + strand, within dcuB at 611.133 kb on - strand, within dcuB at 611.133 kb on - strand, within dcuB at 611.164 kb on + strand, within dcuB at 611.164 kb on + strand, within dcuB at 611.164 kb on + strand, within dcuB at 611.165 kb on - strand, within dcuB at 611.222 kb on + strand, within dcuB at 611.279 kb on - strand, within dcuB at 611.299 kb on + strand, within dcuB at 611.300 kb on - strand, within dcuB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 608,642 + dcuS MCAODC_03020 0.42 -2.3 608,721 + dcuS MCAODC_03020 0.47 -0.0 608,721 + dcuS MCAODC_03020 0.47 -0.9 608,722 - dcuS MCAODC_03020 0.47 +0.3 608,782 + dcuS MCAODC_03020 0.51 -2.8 608,782 + dcuS MCAODC_03020 0.51 -0.8 608,783 - dcuS MCAODC_03020 0.51 +0.6 608,783 - dcuS MCAODC_03020 0.51 -0.9 608,783 - dcuS MCAODC_03020 0.51 -1.8 608,783 - dcuS MCAODC_03020 0.51 -0.3 608,783 - dcuS MCAODC_03020 0.51 +0.0 608,783 - dcuS MCAODC_03020 0.51 -0.1 608,840 + dcuS MCAODC_03020 0.54 -0.3 608,841 - dcuS MCAODC_03020 0.54 -1.4 608,854 + dcuS MCAODC_03020 0.55 -2.0 608,854 + dcuS MCAODC_03020 0.55 +0.3 608,855 - dcuS MCAODC_03020 0.55 +0.0 608,855 - dcuS MCAODC_03020 0.55 +0.0 608,882 + dcuS MCAODC_03020 0.57 -0.4 608,883 - dcuS MCAODC_03020 0.57 -0.2 608,937 - dcuS MCAODC_03020 0.60 +0.3 608,970 + dcuS MCAODC_03020 0.62 +0.6 608,970 + dcuS MCAODC_03020 0.62 +0.8 608,970 + dcuS MCAODC_03020 0.62 +1.9 608,970 + dcuS MCAODC_03020 0.62 +0.7 608,970 + dcuS MCAODC_03020 0.62 -3.3 608,970 + dcuS MCAODC_03020 0.62 -0.4 608,971 - dcuS MCAODC_03020 0.62 -1.5 608,971 - dcuS MCAODC_03020 0.62 +0.3 608,971 - dcuS MCAODC_03020 0.62 +1.1 608,971 - dcuS MCAODC_03020 0.62 -1.5 608,971 - dcuS MCAODC_03020 0.62 -0.9 608,971 - dcuS MCAODC_03020 0.62 -0.0 608,971 - dcuS MCAODC_03020 0.62 +1.1 609,011 + dcuS MCAODC_03020 0.65 -0.7 609,012 - dcuS MCAODC_03020 0.65 +0.2 609,012 - dcuS MCAODC_03020 0.65 +1.0 609,012 - dcuS MCAODC_03020 0.65 -1.1 609,012 - dcuS MCAODC_03020 0.65 +1.5 609,051 + dcuS MCAODC_03020 0.67 -0.9 609,052 - dcuS MCAODC_03020 0.67 +0.5 609,052 - dcuS MCAODC_03020 0.67 -0.9 609,052 - dcuS MCAODC_03020 0.67 +0.3 609,052 - dcuS MCAODC_03020 0.67 -0.1 609,053 + dcuS MCAODC_03020 0.67 +1.8 609,054 - dcuS MCAODC_03020 0.67 -0.9 609,054 - dcuS MCAODC_03020 0.67 +0.1 609,054 - dcuS MCAODC_03020 0.67 +0.1 609,069 + dcuS MCAODC_03020 0.68 +0.4 609,069 + dcuS MCAODC_03020 0.68 -0.0 609,069 + dcuS MCAODC_03020 0.68 -0.3 609,069 + dcuS MCAODC_03020 0.68 +0.2 609,069 + dcuS MCAODC_03020 0.68 -0.4 609,070 - dcuS MCAODC_03020 0.68 -0.1 609,089 + dcuS MCAODC_03020 0.70 +0.4 609,089 + dcuS MCAODC_03020 0.70 +1.0 609,089 + dcuS MCAODC_03020 0.70 +0.4 609,089 + dcuS MCAODC_03020 0.70 +1.0 609,090 - dcuS MCAODC_03020 0.70 +0.8 609,090 - dcuS MCAODC_03020 0.70 -1.0 609,090 - dcuS MCAODC_03020 0.70 -0.4 609,093 + dcuS MCAODC_03020 0.70 -0.7 609,094 - dcuS MCAODC_03020 0.70 -0.8 609,094 - dcuS MCAODC_03020 0.70 +1.7 609,122 + dcuS MCAODC_03020 0.72 +1.2 609,123 - dcuS MCAODC_03020 0.72 +0.0 609,185 - dcuS MCAODC_03020 0.75 -1.0 609,191 + dcuS MCAODC_03020 0.76 -0.6 609,191 + dcuS MCAODC_03020 0.76 -0.1 609,191 + dcuS MCAODC_03020 0.76 -0.7 609,191 + dcuS MCAODC_03020 0.76 -0.3 609,191 + dcuS MCAODC_03020 0.76 +0.2 609,191 + dcuS MCAODC_03020 0.76 +0.3 609,192 - dcuS MCAODC_03020 0.76 +0.3 609,260 + dcuS MCAODC_03020 0.80 +1.0 609,302 - dcuS MCAODC_03020 0.83 -0.1 609,326 + dcuS MCAODC_03020 0.84 +0.3 609,372 - dcuS MCAODC_03020 0.87 +0.2 609,372 - dcuS MCAODC_03020 0.87 -0.5 609,484 + -0.3 609,553 + -0.1 609,594 + -1.1 609,594 + +0.2 609,594 + -0.7 609,638 + -0.1 609,642 + -0.1 609,642 + +0.7 609,642 + -0.5 609,643 - -0.1 609,643 - -0.6 609,643 - -1.0 609,643 - -0.6 609,706 + dcuR MCAODC_03025 0.17 -0.4 609,707 - dcuR MCAODC_03025 0.17 -2.4 609,752 + dcuR MCAODC_03025 0.24 +0.1 609,752 + dcuR MCAODC_03025 0.24 +0.6 609,752 + dcuR MCAODC_03025 0.24 -1.1 609,753 - dcuR MCAODC_03025 0.24 +0.2 609,753 - dcuR MCAODC_03025 0.24 -0.4 609,753 - dcuR MCAODC_03025 0.24 -0.2 609,753 - dcuR MCAODC_03025 0.24 -0.3 609,753 - dcuR MCAODC_03025 0.24 +0.9 609,753 - dcuR MCAODC_03025 0.24 +0.0 609,754 + dcuR MCAODC_03025 0.24 +0.8 609,781 - dcuR MCAODC_03025 0.28 +0.1 609,781 - dcuR MCAODC_03025 0.28 +0.4 609,797 - dcuR MCAODC_03025 0.30 -0.6 609,888 - dcuR MCAODC_03025 0.43 -0.1 609,974 + dcuR MCAODC_03025 0.55 -1.4 609,974 + dcuR MCAODC_03025 0.55 +0.2 609,975 - dcuR MCAODC_03025 0.55 -1.7 609,975 - dcuR MCAODC_03025 0.55 -0.0 609,975 - dcuR MCAODC_03025 0.55 +0.3 609,975 - dcuR MCAODC_03025 0.55 -0.5 609,977 + dcuR MCAODC_03025 0.55 +0.8 609,977 + dcuR MCAODC_03025 0.55 -0.2 610,002 + dcuR MCAODC_03025 0.58 +0.6 610,002 + dcuR MCAODC_03025 0.58 +0.2 610,002 + dcuR MCAODC_03025 0.58 -2.9 610,002 + dcuR MCAODC_03025 0.58 -1.1 610,003 - dcuR MCAODC_03025 0.59 +2.2 610,003 - dcuR MCAODC_03025 0.59 +0.5 610,003 - dcuR MCAODC_03025 0.59 -0.5 610,109 + dcuR MCAODC_03025 0.73 +0.2 610,132 - dcuR MCAODC_03025 0.77 -0.6 610,172 + dcuR MCAODC_03025 0.82 +0.5 610,172 + dcuR MCAODC_03025 0.82 +0.8 610,172 + dcuR MCAODC_03025 0.82 -1.7 610,173 - dcuR MCAODC_03025 0.82 -3.2 610,173 - dcuR MCAODC_03025 0.82 +0.3 610,173 - dcuR MCAODC_03025 0.82 +0.3 610,173 - dcuR MCAODC_03025 0.82 +0.6 610,173 - dcuR MCAODC_03025 0.82 +0.2 610,177 + dcuR MCAODC_03025 0.83 +0.4 610,178 - dcuR MCAODC_03025 0.83 +1.3 610,178 - dcuR MCAODC_03025 0.83 +0.9 610,271 + +2.8 610,278 + -0.6 610,289 + -1.6 610,330 + +0.5 610,330 + -3.9 610,348 + -0.6 610,349 - -1.0 610,400 + -0.2 610,402 + -0.5 610,433 + -1.6 610,434 - +0.7 610,494 - -0.2 610,494 - +0.7 610,507 + +1.8 610,508 - -0.3 610,544 - -0.6 610,548 + -0.3 610,549 - +0.6 610,626 - -0.1 610,690 + -0.9 610,702 + -1.0 610,744 + -0.6 610,745 - +0.1 610,752 - -0.0 610,779 + -0.7 610,828 + -0.6 610,829 - +0.4 610,875 + -1.3 610,875 + +0.3 610,876 - -0.6 610,879 + +0.8 610,879 + +0.6 610,880 - -0.9 610,882 + -1.0 610,891 + +0.6 610,896 + -0.5 610,905 + +0.5 610,905 + +0.1 610,905 + -5.6 610,906 - +0.8 610,916 + +0.6 610,954 - -0.1 611,005 + dcuB MCAODC_03030 0.10 +0.7 611,132 + dcuB MCAODC_03030 0.19 +0.1 611,132 + dcuB MCAODC_03030 0.19 -0.4 611,132 + dcuB MCAODC_03030 0.19 +0.3 611,133 - dcuB MCAODC_03030 0.20 -0.4 611,133 - dcuB MCAODC_03030 0.20 -0.6 611,164 + dcuB MCAODC_03030 0.22 -0.6 611,164 + dcuB MCAODC_03030 0.22 +0.8 611,164 + dcuB MCAODC_03030 0.22 -0.4 611,165 - dcuB MCAODC_03030 0.22 +0.6 611,222 + dcuB MCAODC_03030 0.26 -2.3 611,279 - dcuB MCAODC_03030 0.30 -0.2 611,299 + dcuB MCAODC_03030 0.32 -1.0 611,300 - dcuB MCAODC_03030 0.32 +0.3
Or see this region's nucleotide sequence