Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjfJ and yjfI are separated by 18 nucleotides yjfI and rlmB are separated by 126 nucleotides rlmB and rnr are separated by 180 nucleotides
MCAODC_02720: yjfJ - Uncharacterized protein YjfJ, at 549,087 to 549,785
yjfJ
MCAODC_02725: yjfI - Uncharacterized protein YjfI, at 549,804 to 550,205
yjfI
MCAODC_02730: rlmB - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 550,332 to 551,063
rlmB
MCAODC_02735: rnr - ribonuclease R, at 551,244 to 553,685
rnr
Position (kb) 550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 549.589 kb on - strand, within yjfJ at 549.612 kb on + strand, within yjfJ at 549.786 kb on - strand at 549.789 kb on + strand at 549.864 kb on + strand, within yjfI at 549.923 kb on - strand, within yjfI at 549.991 kb on - strand, within yjfI at 550.148 kb on + strand, within yjfI at 550.206 kb on - strand at 550.207 kb on + strand at 550.208 kb on - strand at 550.210 kb on + strand at 550.220 kb on - strand at 550.224 kb on + strand at 550.278 kb on + strand at 550.278 kb on + strand at 550.280 kb on + strand at 550.461 kb on - strand, within rlmB at 550.516 kb on + strand, within rlmB at 550.523 kb on + strand, within rlmB at 550.523 kb on + strand, within rlmB at 550.523 kb on + strand, within rlmB at 550.523 kb on + strand, within rlmB at 550.524 kb on - strand, within rlmB at 550.560 kb on - strand, within rlmB at 550.577 kb on + strand, within rlmB at 550.577 kb on + strand, within rlmB at 550.577 kb on + strand, within rlmB at 550.577 kb on + strand, within rlmB at 550.577 kb on + strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.642 kb on - strand, within rlmB at 550.895 kb on - strand, within rlmB at 550.895 kb on - strand, within rlmB at 550.895 kb on - strand, within rlmB at 550.980 kb on + strand, within rlmB at 550.981 kb on - strand, within rlmB at 550.981 kb on - strand, within rlmB at 551.065 kb on - strand at 551.069 kb on + strand at 551.069 kb on + strand at 551.070 kb on - strand at 551.115 kb on - strand at 551.130 kb on + strand at 551.131 kb on - strand at 551.131 kb on - strand at 551.131 kb on - strand at 551.131 kb on - strand at 551.150 kb on - strand at 551.150 kb on - strand at 551.150 kb on - strand at 551.214 kb on + strand at 551.215 kb on - strand at 551.215 kb on - strand at 551.239 kb on - strand at 551.404 kb on - strand at 551.520 kb on - strand, within rnr at 551.543 kb on + strand, within rnr at 551.543 kb on + strand, within rnr at 551.543 kb on + strand, within rnr at 551.543 kb on + strand, within rnr at 551.543 kb on + strand, within rnr at 551.543 kb on + strand, within rnr at 551.543 kb on + strand, within rnr at 551.544 kb on - strand, within rnr at 551.544 kb on - strand, within rnr at 551.544 kb on - strand, within rnr at 551.544 kb on - strand, within rnr at 551.644 kb on + strand, within rnr at 551.645 kb on - strand, within rnr at 551.645 kb on - strand, within rnr at 551.744 kb on + strand, within rnr at 551.745 kb on - strand, within rnr at 551.753 kb on + strand, within rnr at 551.757 kb on + strand, within rnr at 551.758 kb on - strand, within rnr at 551.875 kb on + strand, within rnr at 551.882 kb on - strand, within rnr at 551.882 kb on - strand, within rnr at 551.940 kb on - strand, within rnr at 551.987 kb on + strand, within rnr at 551.987 kb on + strand, within rnr at 551.988 kb on - strand, within rnr at 551.999 kb on - strand, within rnr at 551.999 kb on - strand, within rnr at 551.999 kb on - strand, within rnr at 552.044 kb on - strand, within rnr
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 549,589 - yjfJ MCAODC_02720 0.72 -0.5 549,612 + yjfJ MCAODC_02720 0.75 +0.5 549,786 - -1.2 549,789 + +0.3 549,864 + yjfI MCAODC_02725 0.15 +0.6 549,923 - yjfI MCAODC_02725 0.30 +0.7 549,991 - yjfI MCAODC_02725 0.47 +0.0 550,148 + yjfI MCAODC_02725 0.86 +0.9 550,206 - -0.4 550,207 + +1.2 550,208 - -2.8 550,210 + -1.1 550,220 - -0.8 550,224 + +0.0 550,278 + -0.3 550,278 + -0.4 550,280 + +0.1 550,461 - rlmB MCAODC_02730 0.18 +0.1 550,516 + rlmB MCAODC_02730 0.25 +0.6 550,523 + rlmB MCAODC_02730 0.26 -0.2 550,523 + rlmB MCAODC_02730 0.26 +0.5 550,523 + rlmB MCAODC_02730 0.26 +0.3 550,523 + rlmB MCAODC_02730 0.26 -0.4 550,524 - rlmB MCAODC_02730 0.26 -0.0 550,560 - rlmB MCAODC_02730 0.31 +2.0 550,577 + rlmB MCAODC_02730 0.33 +0.2 550,577 + rlmB MCAODC_02730 0.33 -0.7 550,577 + rlmB MCAODC_02730 0.33 +0.9 550,577 + rlmB MCAODC_02730 0.33 +0.0 550,577 + rlmB MCAODC_02730 0.33 -0.2 550,578 - rlmB MCAODC_02730 0.34 -3.3 550,578 - rlmB MCAODC_02730 0.34 -0.6 550,578 - rlmB MCAODC_02730 0.34 -1.2 550,578 - rlmB MCAODC_02730 0.34 +0.2 550,578 - rlmB MCAODC_02730 0.34 +0.4 550,578 - rlmB MCAODC_02730 0.34 +1.0 550,578 - rlmB MCAODC_02730 0.34 +1.5 550,642 - rlmB MCAODC_02730 0.42 +0.1 550,895 - rlmB MCAODC_02730 0.77 +0.8 550,895 - rlmB MCAODC_02730 0.77 +0.5 550,895 - rlmB MCAODC_02730 0.77 +0.1 550,980 + rlmB MCAODC_02730 0.89 +0.7 550,981 - rlmB MCAODC_02730 0.89 +1.4 550,981 - rlmB MCAODC_02730 0.89 +0.3 551,065 - +1.2 551,069 + -0.7 551,069 + -1.4 551,070 - -0.1 551,115 - -0.8 551,130 + -1.9 551,131 - +0.0 551,131 - -1.0 551,131 - +0.6 551,131 - +0.2 551,150 - +0.4 551,150 - +0.0 551,150 - +0.2 551,214 + +0.5 551,215 - -0.2 551,215 - -0.1 551,239 - -0.1 551,404 - +1.0 551,520 - rnr MCAODC_02735 0.11 -1.1 551,543 + rnr MCAODC_02735 0.12 +0.2 551,543 + rnr MCAODC_02735 0.12 -1.3 551,543 + rnr MCAODC_02735 0.12 -0.1 551,543 + rnr MCAODC_02735 0.12 +0.1 551,543 + rnr MCAODC_02735 0.12 -0.4 551,543 + rnr MCAODC_02735 0.12 -0.1 551,543 + rnr MCAODC_02735 0.12 -1.6 551,544 - rnr MCAODC_02735 0.12 -0.3 551,544 - rnr MCAODC_02735 0.12 -0.0 551,544 - rnr MCAODC_02735 0.12 -0.7 551,544 - rnr MCAODC_02735 0.12 +1.4 551,644 + rnr MCAODC_02735 0.16 +2.0 551,645 - rnr MCAODC_02735 0.16 -0.5 551,645 - rnr MCAODC_02735 0.16 -1.9 551,744 + rnr MCAODC_02735 0.20 -1.3 551,745 - rnr MCAODC_02735 0.21 -0.9 551,753 + rnr MCAODC_02735 0.21 -1.3 551,757 + rnr MCAODC_02735 0.21 -0.3 551,758 - rnr MCAODC_02735 0.21 -0.2 551,875 + rnr MCAODC_02735 0.26 -1.1 551,882 - rnr MCAODC_02735 0.26 -1.4 551,882 - rnr MCAODC_02735 0.26 -1.2 551,940 - rnr MCAODC_02735 0.29 +0.4 551,987 + rnr MCAODC_02735 0.30 -0.7 551,987 + rnr MCAODC_02735 0.30 -0.2 551,988 - rnr MCAODC_02735 0.30 +0.4 551,999 - rnr MCAODC_02735 0.31 -2.1 551,999 - rnr MCAODC_02735 0.31 -0.6 551,999 - rnr MCAODC_02735 0.31 -1.9 552,044 - rnr MCAODC_02735 0.33 -0.2
Or see this region's nucleotide sequence