Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lptD and surA are separated by 52 nucleotides surA and pdxA overlap by 1 nucleotides pdxA and rsmA overlap by 4 nucleotides
MCAODC_01335: lptD - LPS assembly protein LptD, at 255,111 to 257,465
lptD
MCAODC_01340: surA - peptidylprolyl isomerase SurA, at 257,518 to 258,804
surA
MCAODC_01345: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 258,804 to 259,793
pdxA
MCAODC_01350: rsmA - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA, at 259,790 to 260,611
rsmA
Position (kb) 257
258
259 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 257.403 kb on + strand at 257.404 kb on - strand at 257.476 kb on + strand at 257.476 kb on + strand at 257.477 kb on - strand at 257.517 kb on + strand at 257.565 kb on + strand at 257.652 kb on - strand, within surA at 257.820 kb on + strand, within surA at 257.900 kb on - strand, within surA at 257.928 kb on + strand, within surA at 257.929 kb on - strand, within surA at 258.013 kb on - strand, within surA at 258.315 kb on + strand, within surA at 258.317 kb on + strand, within surA at 258.317 kb on + strand, within surA at 258.469 kb on - strand, within surA at 258.522 kb on + strand, within surA at 258.669 kb on + strand, within surA at 258.710 kb on - strand at 258.729 kb on + strand at 258.781 kb on + strand at 258.803 kb on - strand at 258.803 kb on - strand at 258.803 kb on - strand at 258.865 kb on + strand at 258.865 kb on + strand at 258.865 kb on + strand at 258.865 kb on + strand at 258.866 kb on - strand at 258.866 kb on - strand at 258.979 kb on - strand, within pdxA at 258.979 kb on - strand, within pdxA at 258.979 kb on - strand, within pdxA at 259.011 kb on - strand, within pdxA at 259.027 kb on + strand, within pdxA at 259.028 kb on - strand, within pdxA at 259.028 kb on - strand, within pdxA at 259.028 kb on - strand, within pdxA at 259.070 kb on - strand, within pdxA at 259.089 kb on + strand, within pdxA at 259.090 kb on - strand, within pdxA at 259.090 kb on - strand, within pdxA at 259.212 kb on - strand, within pdxA at 259.328 kb on + strand, within pdxA at 259.329 kb on - strand, within pdxA at 259.362 kb on - strand, within pdxA at 259.394 kb on + strand, within pdxA at 259.455 kb on - strand, within pdxA at 259.471 kb on + strand, within pdxA at 259.471 kb on + strand, within pdxA at 259.472 kb on - strand, within pdxA at 259.472 kb on - strand, within pdxA at 259.481 kb on + strand, within pdxA at 259.482 kb on - strand, within pdxA at 259.482 kb on - strand, within pdxA at 259.482 kb on - strand, within pdxA at 259.563 kb on + strand, within pdxA at 259.564 kb on - strand, within pdxA at 259.597 kb on - strand, within pdxA at 259.597 kb on - strand, within pdxA at 259.597 kb on - strand, within pdxA at 259.655 kb on + strand, within pdxA at 259.655 kb on + strand, within pdxA at 259.655 kb on + strand, within pdxA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 257,403 + -1.6 257,404 - -1.2 257,476 + -1.4 257,476 + -1.2 257,477 - -3.0 257,517 + +0.0 257,565 + -1.3 257,652 - surA MCAODC_01340 0.10 -1.3 257,820 + surA MCAODC_01340 0.23 -3.3 257,900 - surA MCAODC_01340 0.30 -1.0 257,928 + surA MCAODC_01340 0.32 -2.4 257,929 - surA MCAODC_01340 0.32 -3.2 258,013 - surA MCAODC_01340 0.38 -1.4 258,315 + surA MCAODC_01340 0.62 -2.1 258,317 + surA MCAODC_01340 0.62 -4.0 258,317 + surA MCAODC_01340 0.62 -0.2 258,469 - surA MCAODC_01340 0.74 +0.8 258,522 + surA MCAODC_01340 0.78 -0.5 258,669 + surA MCAODC_01340 0.89 -0.0 258,710 - -1.5 258,729 + -1.3 258,781 + -0.1 258,803 - -3.6 258,803 - -3.6 258,803 - -2.2 258,865 + -2.9 258,865 + -0.6 258,865 + -2.2 258,865 + -2.3 258,866 - -3.4 258,866 - -1.9 258,979 - pdxA MCAODC_01345 0.18 -3.9 258,979 - pdxA MCAODC_01345 0.18 -2.5 258,979 - pdxA MCAODC_01345 0.18 -4.5 259,011 - pdxA MCAODC_01345 0.21 -2.4 259,027 + pdxA MCAODC_01345 0.23 -2.0 259,028 - pdxA MCAODC_01345 0.23 -1.5 259,028 - pdxA MCAODC_01345 0.23 -0.6 259,028 - pdxA MCAODC_01345 0.23 -3.2 259,070 - pdxA MCAODC_01345 0.27 -0.7 259,089 + pdxA MCAODC_01345 0.29 -5.4 259,090 - pdxA MCAODC_01345 0.29 -2.8 259,090 - pdxA MCAODC_01345 0.29 -1.4 259,212 - pdxA MCAODC_01345 0.41 -2.0 259,328 + pdxA MCAODC_01345 0.53 -5.0 259,329 - pdxA MCAODC_01345 0.53 -3.5 259,362 - pdxA MCAODC_01345 0.56 -0.7 259,394 + pdxA MCAODC_01345 0.60 -2.2 259,455 - pdxA MCAODC_01345 0.66 -3.2 259,471 + pdxA MCAODC_01345 0.67 -1.4 259,471 + pdxA MCAODC_01345 0.67 -3.4 259,472 - pdxA MCAODC_01345 0.67 -3.0 259,472 - pdxA MCAODC_01345 0.67 -0.8 259,481 + pdxA MCAODC_01345 0.68 +0.8 259,482 - pdxA MCAODC_01345 0.68 -3.9 259,482 - pdxA MCAODC_01345 0.68 -2.1 259,482 - pdxA MCAODC_01345 0.68 -2.2 259,563 + pdxA MCAODC_01345 0.77 -3.3 259,564 - pdxA MCAODC_01345 0.77 -4.9 259,597 - pdxA MCAODC_01345 0.80 -4.5 259,597 - pdxA MCAODC_01345 0.80 -2.4 259,597 - pdxA MCAODC_01345 0.80 -0.5 259,655 + pdxA MCAODC_01345 0.86 -2.1 259,655 + pdxA MCAODC_01345 0.86 -1.9 259,655 + pdxA MCAODC_01345 0.86 -2.9
Or see this region's nucleotide sequence