Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cueO and yacC are separated by 204 nucleotides yacC and speE are separated by 105 nucleotides speE and speD are separated by 15 nucleotides
MCAODC_00970: cueO - multicopper oxidase CueO, at 174,205 to 175,755
cueO
MCAODC_00975: yacC - YacC family pilotin-like protein, at 175,960 to 176,268
yacC
MCAODC_00980: speE - polyamine aminopropyltransferase, at 176,374 to 177,240
speE
MCAODC_00985: speD - adenosylmethionine decarboxylase, at 177,256 to 178,050
speD
Position (kb) 175
176
177 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 174.992 kb on + strand, within cueO at 174.993 kb on - strand, within cueO at 175.039 kb on - strand, within cueO at 175.039 kb on - strand, within cueO at 175.039 kb on - strand, within cueO at 175.246 kb on + strand, within cueO at 175.348 kb on - strand, within cueO at 175.401 kb on + strand, within cueO at 175.402 kb on - strand, within cueO at 175.482 kb on + strand, within cueO at 175.482 kb on + strand, within cueO at 175.484 kb on + strand, within cueO at 175.484 kb on + strand, within cueO at 175.484 kb on + strand, within cueO at 175.484 kb on + strand, within cueO at 175.484 kb on + strand, within cueO at 175.484 kb on + strand, within cueO at 175.484 kb on + strand, within cueO at 175.484 kb on + strand, within cueO at 175.484 kb on + strand, within cueO at 175.485 kb on - strand, within cueO at 175.485 kb on - strand, within cueO at 175.485 kb on - strand, within cueO at 175.485 kb on - strand, within cueO at 175.485 kb on - strand, within cueO at 175.485 kb on - strand, within cueO at 175.485 kb on - strand, within cueO at 175.488 kb on + strand, within cueO at 175.488 kb on + strand, within cueO at 175.488 kb on + strand, within cueO at 175.489 kb on - strand, within cueO at 175.517 kb on - strand, within cueO at 175.517 kb on - strand, within cueO at 175.517 kb on - strand, within cueO at 175.548 kb on + strand, within cueO at 175.550 kb on + strand, within cueO at 175.550 kb on + strand, within cueO at 175.550 kb on + strand, within cueO at 175.560 kb on + strand, within cueO at 175.560 kb on + strand, within cueO at 175.560 kb on + strand, within cueO at 175.561 kb on - strand, within cueO at 175.561 kb on - strand, within cueO at 175.584 kb on + strand, within cueO at 175.584 kb on + strand, within cueO at 175.585 kb on - strand, within cueO at 175.585 kb on - strand, within cueO at 175.602 kb on + strand at 175.603 kb on - strand at 175.603 kb on - strand at 175.606 kb on + strand at 175.607 kb on - strand at 175.607 kb on - strand at 175.755 kb on + strand at 175.755 kb on + strand at 175.755 kb on + strand at 175.756 kb on - strand at 175.756 kb on - strand at 175.756 kb on - strand at 175.759 kb on + strand at 175.759 kb on + strand at 175.773 kb on + strand at 175.773 kb on + strand at 175.773 kb on + strand at 175.773 kb on + strand at 175.774 kb on - strand at 175.774 kb on - strand at 175.805 kb on + strand at 175.806 kb on - strand at 175.847 kb on + strand at 175.847 kb on + strand at 175.857 kb on + strand at 175.858 kb on - strand at 175.887 kb on - strand at 175.894 kb on - strand at 175.902 kb on + strand at 175.903 kb on - strand at 175.903 kb on - strand at 176.010 kb on + strand, within yacC at 176.010 kb on + strand, within yacC at 176.011 kb on - strand, within yacC at 176.011 kb on - strand, within yacC at 176.011 kb on - strand, within yacC at 176.069 kb on + strand, within yacC at 176.069 kb on + strand, within yacC at 176.073 kb on + strand, within yacC at 176.133 kb on + strand, within yacC at 176.133 kb on + strand, within yacC at 176.138 kb on - strand, within yacC at 176.138 kb on - strand, within yacC at 176.138 kb on - strand, within yacC at 176.177 kb on - strand, within yacC at 176.243 kb on + strand at 176.243 kb on + strand at 176.258 kb on - strand at 176.267 kb on - strand at 176.319 kb on + strand at 176.319 kb on + strand at 176.320 kb on - strand at 176.320 kb on - strand at 176.324 kb on - strand at 176.324 kb on - strand at 176.327 kb on - strand at 176.327 kb on - strand at 176.327 kb on - strand at 176.365 kb on + strand at 176.406 kb on - strand at 176.436 kb on - strand at 176.439 kb on + strand at 176.440 kb on - strand at 176.449 kb on + strand at 176.450 kb on - strand at 176.528 kb on + strand, within speE at 176.531 kb on + strand, within speE at 176.531 kb on + strand, within speE at 176.531 kb on + strand, within speE at 176.531 kb on + strand, within speE at 176.556 kb on + strand, within speE at 176.556 kb on + strand, within speE at 176.557 kb on - strand, within speE at 176.560 kb on + strand, within speE at 176.560 kb on + strand, within speE at 176.561 kb on - strand, within speE at 176.668 kb on - strand, within speE at 176.731 kb on + strand, within speE at 176.731 kb on + strand, within speE at 176.732 kb on - strand, within speE at 176.735 kb on + strand, within speE at 176.736 kb on - strand, within speE at 176.776 kb on - strand, within speE at 176.776 kb on - strand, within speE at 176.838 kb on + strand, within speE at 176.838 kb on + strand, within speE at 176.838 kb on + strand, within speE at 176.839 kb on - strand, within speE at 176.839 kb on - strand, within speE at 176.839 kb on - strand, within speE at 177.008 kb on - strand, within speE at 177.008 kb on - strand, within speE at 177.028 kb on + strand, within speE at 177.049 kb on + strand, within speE at 177.049 kb on + strand, within speE at 177.050 kb on - strand, within speE at 177.052 kb on + strand, within speE at 177.088 kb on - strand, within speE at 177.161 kb on - strand at 177.163 kb on + strand at 177.163 kb on + strand at 177.164 kb on - strand at 177.164 kb on - strand at 177.198 kb on - strand at 177.205 kb on + strand at 177.239 kb on - strand at 177.239 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 174,992 + cueO MCAODC_00970 0.51 +0.2 174,993 - cueO MCAODC_00970 0.51 -1.1 175,039 - cueO MCAODC_00970 0.54 +2.2 175,039 - cueO MCAODC_00970 0.54 -0.0 175,039 - cueO MCAODC_00970 0.54 +1.7 175,246 + cueO MCAODC_00970 0.67 -0.3 175,348 - cueO MCAODC_00970 0.74 +1.1 175,401 + cueO MCAODC_00970 0.77 +0.1 175,402 - cueO MCAODC_00970 0.77 -0.1 175,482 + cueO MCAODC_00970 0.82 -0.4 175,482 + cueO MCAODC_00970 0.82 -1.7 175,484 + cueO MCAODC_00970 0.82 -1.7 175,484 + cueO MCAODC_00970 0.82 -0.1 175,484 + cueO MCAODC_00970 0.82 +0.6 175,484 + cueO MCAODC_00970 0.82 -5.3 175,484 + cueO MCAODC_00970 0.82 -1.0 175,484 + cueO MCAODC_00970 0.82 -0.2 175,484 + cueO MCAODC_00970 0.82 +0.8 175,484 + cueO MCAODC_00970 0.82 +1.0 175,484 + cueO MCAODC_00970 0.82 -0.4 175,485 - cueO MCAODC_00970 0.83 +1.4 175,485 - cueO MCAODC_00970 0.83 -1.3 175,485 - cueO MCAODC_00970 0.83 +0.2 175,485 - cueO MCAODC_00970 0.83 +1.1 175,485 - cueO MCAODC_00970 0.83 -1.4 175,485 - cueO MCAODC_00970 0.83 -1.0 175,485 - cueO MCAODC_00970 0.83 -0.4 175,488 + cueO MCAODC_00970 0.83 +0.5 175,488 + cueO MCAODC_00970 0.83 -0.0 175,488 + cueO MCAODC_00970 0.83 -1.1 175,489 - cueO MCAODC_00970 0.83 +2.0 175,517 - cueO MCAODC_00970 0.85 -0.6 175,517 - cueO MCAODC_00970 0.85 +0.3 175,517 - cueO MCAODC_00970 0.85 -0.5 175,548 + cueO MCAODC_00970 0.87 -0.6 175,550 + cueO MCAODC_00970 0.87 +0.4 175,550 + cueO MCAODC_00970 0.87 +0.2 175,550 + cueO MCAODC_00970 0.87 +0.7 175,560 + cueO MCAODC_00970 0.87 +0.3 175,560 + cueO MCAODC_00970 0.87 +1.2 175,560 + cueO MCAODC_00970 0.87 -2.6 175,561 - cueO MCAODC_00970 0.87 -0.2 175,561 - cueO MCAODC_00970 0.87 +0.4 175,584 + cueO MCAODC_00970 0.89 -2.5 175,584 + cueO MCAODC_00970 0.89 +1.5 175,585 - cueO MCAODC_00970 0.89 -0.4 175,585 - cueO MCAODC_00970 0.89 +0.0 175,602 + -0.7 175,603 - +0.5 175,603 - -2.9 175,606 + -3.3 175,607 - -1.3 175,607 - +0.3 175,755 + +0.8 175,755 + +0.8 175,755 + -0.3 175,756 - +0.2 175,756 - +0.1 175,756 - -0.1 175,759 + +0.4 175,759 + -0.6 175,773 + +0.4 175,773 + -0.3 175,773 + -1.6 175,773 + +0.1 175,774 - +0.4 175,774 - -0.6 175,805 + -0.4 175,806 - -1.7 175,847 + -0.6 175,847 + -0.2 175,857 + -0.2 175,858 - -0.4 175,887 - +0.2 175,894 - +0.5 175,902 + -0.9 175,903 - -1.0 175,903 - +0.4 176,010 + yacC MCAODC_00975 0.16 +0.0 176,010 + yacC MCAODC_00975 0.16 +1.0 176,011 - yacC MCAODC_00975 0.17 +1.6 176,011 - yacC MCAODC_00975 0.17 +1.3 176,011 - yacC MCAODC_00975 0.17 +0.9 176,069 + yacC MCAODC_00975 0.35 -0.7 176,069 + yacC MCAODC_00975 0.35 -0.1 176,073 + yacC MCAODC_00975 0.37 +1.6 176,133 + yacC MCAODC_00975 0.56 -0.1 176,133 + yacC MCAODC_00975 0.56 +0.5 176,138 - yacC MCAODC_00975 0.58 +0.2 176,138 - yacC MCAODC_00975 0.58 +1.2 176,138 - yacC MCAODC_00975 0.58 -1.7 176,177 - yacC MCAODC_00975 0.70 -1.7 176,243 + -1.4 176,243 + -0.4 176,258 - +0.6 176,267 - +0.1 176,319 + -0.3 176,319 + +0.3 176,320 - -0.9 176,320 - -0.5 176,324 - -0.7 176,324 - -1.0 176,327 - +0.9 176,327 - +0.1 176,327 - -0.3 176,365 + -0.1 176,406 - -1.3 176,436 - +0.6 176,439 + +1.4 176,440 - -3.1 176,449 + +1.1 176,450 - +1.7 176,528 + speE MCAODC_00980 0.18 -0.2 176,531 + speE MCAODC_00980 0.18 +0.4 176,531 + speE MCAODC_00980 0.18 +0.1 176,531 + speE MCAODC_00980 0.18 +0.5 176,531 + speE MCAODC_00980 0.18 +1.1 176,556 + speE MCAODC_00980 0.21 +1.4 176,556 + speE MCAODC_00980 0.21 +0.3 176,557 - speE MCAODC_00980 0.21 -2.5 176,560 + speE MCAODC_00980 0.21 +0.9 176,560 + speE MCAODC_00980 0.21 +1.9 176,561 - speE MCAODC_00980 0.22 -0.8 176,668 - speE MCAODC_00980 0.34 -0.7 176,731 + speE MCAODC_00980 0.41 -0.6 176,731 + speE MCAODC_00980 0.41 -0.3 176,732 - speE MCAODC_00980 0.41 -1.1 176,735 + speE MCAODC_00980 0.42 +0.1 176,736 - speE MCAODC_00980 0.42 +2.5 176,776 - speE MCAODC_00980 0.46 -0.6 176,776 - speE MCAODC_00980 0.46 +1.0 176,838 + speE MCAODC_00980 0.54 -0.7 176,838 + speE MCAODC_00980 0.54 +0.4 176,838 + speE MCAODC_00980 0.54 -0.5 176,839 - speE MCAODC_00980 0.54 +0.3 176,839 - speE MCAODC_00980 0.54 +1.8 176,839 - speE MCAODC_00980 0.54 -0.7 177,008 - speE MCAODC_00980 0.73 -0.1 177,008 - speE MCAODC_00980 0.73 -0.8 177,028 + speE MCAODC_00980 0.75 +0.6 177,049 + speE MCAODC_00980 0.78 -0.3 177,049 + speE MCAODC_00980 0.78 -2.5 177,050 - speE MCAODC_00980 0.78 +0.1 177,052 + speE MCAODC_00980 0.78 +0.7 177,088 - speE MCAODC_00980 0.82 +0.2 177,161 - -0.1 177,163 + -0.6 177,163 + -0.0 177,164 - -1.0 177,164 - -1.3 177,198 - -3.7 177,205 + +0.6 177,239 - +1.3 177,239 - +0.7
Or see this region's nucleotide sequence