Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt frsA and gpt are separated by 91 nucleotides gpt and pepD are separated by 260 nucleotides
MCAODC_00210: frsA - esterase FrsA, at 18,936 to 20,180
frsA
MCAODC_00215: gpt - xanthine phosphoribosyltransferase, at 20,272 to 20,730
gpt
MCAODC_00220: pepD - cytosol nonspecific dipeptidase, at 20,991 to 22,448
pepD
Position (kb) 20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 19.284 kb on + strand, within frsA at 19.330 kb on + strand, within frsA at 19.331 kb on - strand, within frsA at 19.404 kb on + strand, within frsA at 19.404 kb on + strand, within frsA at 19.405 kb on - strand, within frsA at 19.422 kb on + strand, within frsA at 19.493 kb on + strand, within frsA at 19.494 kb on - strand, within frsA at 19.499 kb on + strand, within frsA at 19.499 kb on + strand, within frsA at 19.531 kb on + strand, within frsA at 19.540 kb on + strand, within frsA at 19.540 kb on + strand, within frsA at 19.541 kb on - strand, within frsA at 19.549 kb on + strand, within frsA at 19.550 kb on - strand, within frsA at 19.552 kb on + strand, within frsA at 19.553 kb on - strand, within frsA at 19.587 kb on + strand, within frsA at 19.587 kb on + strand, within frsA at 19.587 kb on + strand, within frsA at 19.587 kb on + strand, within frsA at 19.590 kb on + strand, within frsA at 19.712 kb on - strand, within frsA at 19.786 kb on + strand, within frsA at 19.786 kb on + strand, within frsA at 19.886 kb on - strand, within frsA at 19.886 kb on - strand, within frsA at 19.920 kb on - strand, within frsA at 19.924 kb on + strand, within frsA at 19.925 kb on - strand, within frsA at 19.964 kb on + strand, within frsA at 19.964 kb on + strand, within frsA at 19.964 kb on + strand, within frsA at 19.965 kb on - strand, within frsA at 19.965 kb on - strand, within frsA at 19.965 kb on - strand, within frsA at 19.965 kb on - strand, within frsA at 19.965 kb on - strand, within frsA at 19.965 kb on - strand, within frsA at 20.058 kb on - strand at 20.058 kb on - strand at 20.058 kb on - strand at 20.099 kb on + strand at 20.136 kb on - strand at 20.198 kb on + strand at 20.198 kb on + strand at 20.198 kb on + strand at 20.202 kb on + strand at 20.202 kb on + strand at 20.212 kb on + strand at 20.217 kb on + strand at 20.217 kb on + strand at 20.217 kb on + strand at 20.217 kb on + strand at 20.357 kb on + strand, within gpt at 20.358 kb on - strand, within gpt at 20.473 kb on - strand, within gpt at 20.517 kb on + strand, within gpt at 20.518 kb on - strand, within gpt at 20.518 kb on - strand, within gpt at 20.543 kb on + strand, within gpt at 20.544 kb on - strand, within gpt at 20.553 kb on + strand, within gpt at 20.554 kb on - strand, within gpt at 20.635 kb on - strand, within gpt at 20.680 kb on - strand, within gpt at 20.717 kb on + strand at 20.717 kb on + strand at 20.718 kb on - strand at 20.755 kb on + strand at 20.763 kb on - strand at 20.785 kb on - strand at 20.800 kb on - strand at 20.802 kb on - strand at 20.827 kb on + strand at 20.899 kb on + strand at 20.899 kb on + strand at 20.900 kb on - strand at 20.900 kb on - strand at 20.987 kb on + strand at 20.987 kb on + strand at 20.988 kb on - strand at 20.988 kb on - strand at 20.988 kb on - strand at 21.010 kb on + strand at 21.053 kb on + strand at 21.054 kb on - strand at 21.054 kb on - strand at 21.054 kb on - strand at 21.054 kb on - strand at 21.054 kb on - strand at 21.069 kb on + strand at 21.093 kb on + strand at 21.093 kb on + strand at 21.093 kb on + strand at 21.093 kb on + strand at 21.093 kb on + strand at 21.149 kb on + strand, within pepD at 21.149 kb on + strand, within pepD at 21.149 kb on + strand, within pepD at 21.149 kb on + strand, within pepD at 21.150 kb on - strand, within pepD at 21.150 kb on - strand, within pepD at 21.152 kb on + strand, within pepD at 21.152 kb on + strand, within pepD at 21.153 kb on - strand, within pepD at 21.182 kb on + strand, within pepD at 21.183 kb on - strand, within pepD at 21.194 kb on + strand, within pepD at 21.242 kb on + strand, within pepD at 21.276 kb on - strand, within pepD at 21.285 kb on + strand, within pepD at 21.286 kb on - strand, within pepD at 21.286 kb on - strand, within pepD at 21.287 kb on + strand, within pepD at 21.287 kb on + strand, within pepD at 21.287 kb on + strand, within pepD at 21.287 kb on + strand, within pepD at 21.287 kb on + strand, within pepD at 21.287 kb on + strand, within pepD at 21.287 kb on + strand, within pepD at 21.287 kb on + strand, within pepD at 21.288 kb on - strand, within pepD at 21.288 kb on - strand, within pepD at 21.288 kb on - strand, within pepD at 21.288 kb on - strand, within pepD at 21.288 kb on - strand, within pepD at 21.288 kb on - strand, within pepD at 21.288 kb on - strand, within pepD at 21.347 kb on + strand, within pepD at 21.488 kb on + strand, within pepD at 21.488 kb on + strand, within pepD at 21.519 kb on + strand, within pepD at 21.519 kb on + strand, within pepD at 21.519 kb on + strand, within pepD at 21.566 kb on - strand, within pepD at 21.613 kb on + strand, within pepD at 21.613 kb on + strand, within pepD at 21.614 kb on - strand, within pepD at 21.614 kb on - strand, within pepD at 21.614 kb on - strand, within pepD
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 19,284 + frsA MCAODC_00210 0.28 +0.6 19,330 + frsA MCAODC_00210 0.32 +0.6 19,331 - frsA MCAODC_00210 0.32 -0.4 19,404 + frsA MCAODC_00210 0.38 +0.1 19,404 + frsA MCAODC_00210 0.38 +0.8 19,405 - frsA MCAODC_00210 0.38 -1.7 19,422 + frsA MCAODC_00210 0.39 -0.3 19,493 + frsA MCAODC_00210 0.45 +0.9 19,494 - frsA MCAODC_00210 0.45 -0.1 19,499 + frsA MCAODC_00210 0.45 -1.4 19,499 + frsA MCAODC_00210 0.45 +0.5 19,531 + frsA MCAODC_00210 0.48 -0.8 19,540 + frsA MCAODC_00210 0.49 -0.8 19,540 + frsA MCAODC_00210 0.49 -1.0 19,541 - frsA MCAODC_00210 0.49 +0.5 19,549 + frsA MCAODC_00210 0.49 -0.8 19,550 - frsA MCAODC_00210 0.49 -0.3 19,552 + frsA MCAODC_00210 0.49 +0.3 19,553 - frsA MCAODC_00210 0.50 -1.2 19,587 + frsA MCAODC_00210 0.52 +0.0 19,587 + frsA MCAODC_00210 0.52 -0.5 19,587 + frsA MCAODC_00210 0.52 -0.6 19,587 + frsA MCAODC_00210 0.52 -0.1 19,590 + frsA MCAODC_00210 0.53 -1.0 19,712 - frsA MCAODC_00210 0.62 -2.1 19,786 + frsA MCAODC_00210 0.68 -1.2 19,786 + frsA MCAODC_00210 0.68 -2.5 19,886 - frsA MCAODC_00210 0.76 -0.0 19,886 - frsA MCAODC_00210 0.76 +0.2 19,920 - frsA MCAODC_00210 0.79 -1.6 19,924 + frsA MCAODC_00210 0.79 +0.9 19,925 - frsA MCAODC_00210 0.79 -0.0 19,964 + frsA MCAODC_00210 0.83 -1.1 19,964 + frsA MCAODC_00210 0.83 -0.6 19,964 + frsA MCAODC_00210 0.83 -1.6 19,965 - frsA MCAODC_00210 0.83 -0.0 19,965 - frsA MCAODC_00210 0.83 +0.9 19,965 - frsA MCAODC_00210 0.83 +0.6 19,965 - frsA MCAODC_00210 0.83 +0.8 19,965 - frsA MCAODC_00210 0.83 -0.3 19,965 - frsA MCAODC_00210 0.83 +0.9 20,058 - +0.5 20,058 - -0.6 20,058 - +0.5 20,099 + +0.6 20,136 - -1.1 20,198 + -1.0 20,198 + -0.5 20,198 + +0.6 20,202 + -2.1 20,202 + +1.1 20,212 + -0.2 20,217 + -3.0 20,217 + +0.1 20,217 + -0.3 20,217 + -0.1 20,357 + gpt MCAODC_00215 0.19 -2.9 20,358 - gpt MCAODC_00215 0.19 -1.0 20,473 - gpt MCAODC_00215 0.44 -0.3 20,517 + gpt MCAODC_00215 0.53 -0.0 20,518 - gpt MCAODC_00215 0.54 +0.2 20,518 - gpt MCAODC_00215 0.54 +0.7 20,543 + gpt MCAODC_00215 0.59 +0.4 20,544 - gpt MCAODC_00215 0.59 +1.1 20,553 + gpt MCAODC_00215 0.61 -0.0 20,554 - gpt MCAODC_00215 0.61 -0.1 20,635 - gpt MCAODC_00215 0.79 +0.7 20,680 - gpt MCAODC_00215 0.89 -1.3 20,717 + -3.2 20,717 + +0.4 20,718 - -1.1 20,755 + -0.9 20,763 - -0.9 20,785 - -1.5 20,800 - +1.3 20,802 - -0.0 20,827 + -0.0 20,899 + -1.2 20,899 + -0.3 20,900 - -1.8 20,900 - -0.3 20,987 + -1.8 20,987 + +0.7 20,988 - -1.3 20,988 - +0.3 20,988 - -1.1 21,010 + -0.8 21,053 + -1.0 21,054 - -0.8 21,054 - -0.3 21,054 - +0.4 21,054 - -1.9 21,054 - +0.8 21,069 + +1.4 21,093 + -1.3 21,093 + -0.4 21,093 + -2.6 21,093 + -0.2 21,093 + -2.3 21,149 + pepD MCAODC_00220 0.11 -0.2 21,149 + pepD MCAODC_00220 0.11 -0.5 21,149 + pepD MCAODC_00220 0.11 +0.8 21,149 + pepD MCAODC_00220 0.11 -0.2 21,150 - pepD MCAODC_00220 0.11 +0.2 21,150 - pepD MCAODC_00220 0.11 -0.7 21,152 + pepD MCAODC_00220 0.11 +3.1 21,152 + pepD MCAODC_00220 0.11 -2.3 21,153 - pepD MCAODC_00220 0.11 -0.1 21,182 + pepD MCAODC_00220 0.13 -0.3 21,183 - pepD MCAODC_00220 0.13 -0.1 21,194 + pepD MCAODC_00220 0.14 -0.1 21,242 + pepD MCAODC_00220 0.17 -1.0 21,276 - pepD MCAODC_00220 0.20 +0.5 21,285 + pepD MCAODC_00220 0.20 +1.4 21,286 - pepD MCAODC_00220 0.20 +0.3 21,286 - pepD MCAODC_00220 0.20 +1.2 21,287 + pepD MCAODC_00220 0.20 +0.3 21,287 + pepD MCAODC_00220 0.20 -1.0 21,287 + pepD MCAODC_00220 0.20 +0.0 21,287 + pepD MCAODC_00220 0.20 +0.4 21,287 + pepD MCAODC_00220 0.20 -2.1 21,287 + pepD MCAODC_00220 0.20 -2.5 21,287 + pepD MCAODC_00220 0.20 +0.4 21,287 + pepD MCAODC_00220 0.20 -0.5 21,288 - pepD MCAODC_00220 0.20 -2.7 21,288 - pepD MCAODC_00220 0.20 -0.8 21,288 - pepD MCAODC_00220 0.20 +0.1 21,288 - pepD MCAODC_00220 0.20 +0.6 21,288 - pepD MCAODC_00220 0.20 -0.2 21,288 - pepD MCAODC_00220 0.20 +0.8 21,288 - pepD MCAODC_00220 0.20 -2.3 21,347 + pepD MCAODC_00220 0.24 -1.1 21,488 + pepD MCAODC_00220 0.34 -1.8 21,488 + pepD MCAODC_00220 0.34 +0.9 21,519 + pepD MCAODC_00220 0.36 +0.8 21,519 + pepD MCAODC_00220 0.36 +1.4 21,519 + pepD MCAODC_00220 0.36 +0.3 21,566 - pepD MCAODC_00220 0.39 +0.7 21,613 + pepD MCAODC_00220 0.43 -0.2 21,613 + pepD MCAODC_00220 0.43 +0.2 21,614 - pepD MCAODC_00220 0.43 -0.9 21,614 - pepD MCAODC_00220 0.43 -0.3 21,614 - pepD MCAODC_00220 0.43 -1.7
Or see this region's nucleotide sequence