Strain Fitness in Escherichia coli ECRC101 around MCAODC_00120

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpinE and MCAODC_00115 are separated by 29 nucleotidesMCAODC_00115 and MCAODC_00120 overlap by 1 nucleotidesMCAODC_00120 and MCAODC_00125 overlap by 29 nucleotidesMCAODC_00125 and MCAODC_00130 are separated by 20 nucleotides MCAODC_00110: pinE - site-specific DNA recombinase, at 5,829 to 6,383 pinE MCAODC_00115: MCAODC_00115 - Phage tail protein, at 6,413 to 6,907 _00115 MCAODC_00120: MCAODC_00120 - phage tail protein, at 6,907 to 7,500 _00120 MCAODC_00125: MCAODC_00125 - tail fiber assembly protein, at 7,472 to 7,915 _00125 MCAODC_00130: MCAODC_00130 - Tail fiber protein, at 7,936 to 8,646 _00130 Position (kb) 6 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5.923 kb on - strand, within pinEat 5.923 kb on - strand, within pinEat 5.954 kb on + strand, within pinEat 5.954 kb on + strand, within pinEat 5.955 kb on - strand, within pinEat 5.955 kb on - strand, within pinEat 6.093 kb on - strand, within pinEat 6.099 kb on - strand, within pinEat 6.105 kb on - strand, within pinEat 6.105 kb on - strand, within pinEat 6.273 kb on - strand, within pinEat 6.280 kb on - strand, within pinEat 6.326 kb on + strand, within pinEat 6.327 kb on - strand, within pinEat 6.327 kb on - strand, within pinEat 6.327 kb on - strand, within pinEat 6.366 kb on + strandat 6.366 kb on + strandat 6.366 kb on + strandat 6.366 kb on + strandat 6.366 kb on + strandat 6.367 kb on - strandat 6.367 kb on - strandat 6.367 kb on - strandat 6.367 kb on - strandat 6.367 kb on - strandat 6.367 kb on - strandat 6.367 kb on - strandat 6.367 kb on - strandat 6.367 kb on - strandat 6.367 kb on - strandat 6.370 kb on + strandat 6.371 kb on - strandat 6.371 kb on - strandat 6.371 kb on - strandat 6.377 kb on + strandat 6.378 kb on - strandat 6.386 kb on + strandat 6.386 kb on + strandat 6.387 kb on - strandat 6.476 kb on - strand, within MCAODC_00115at 6.517 kb on + strand, within MCAODC_00115at 6.517 kb on + strand, within MCAODC_00115at 6.517 kb on + strand, within MCAODC_00115at 6.517 kb on + strand, within MCAODC_00115at 6.518 kb on - strand, within MCAODC_00115at 6.541 kb on + strand, within MCAODC_00115at 6.541 kb on + strand, within MCAODC_00115at 6.542 kb on - strand, within MCAODC_00115at 6.621 kb on + strand, within MCAODC_00115at 6.622 kb on - strand, within MCAODC_00115at 6.624 kb on + strand, within MCAODC_00115at 6.625 kb on - strand, within MCAODC_00115at 6.652 kb on + strand, within MCAODC_00115at 6.653 kb on - strand, within MCAODC_00115at 6.712 kb on + strand, within MCAODC_00115at 6.713 kb on - strand, within MCAODC_00115at 6.883 kb on + strandat 6.884 kb on - strandat 6.906 kb on - strandat 6.970 kb on + strand, within MCAODC_00120at 6.971 kb on - strand, within MCAODC_00120at 6.992 kb on - strand, within MCAODC_00120at 7.012 kb on + strand, within MCAODC_00120at 7.013 kb on - strand, within MCAODC_00120at 7.014 kb on + strand, within MCAODC_00120at 7.015 kb on - strand, within MCAODC_00120at 7.017 kb on + strand, within MCAODC_00120at 7.018 kb on - strand, within MCAODC_00120at 7.033 kb on - strand, within MCAODC_00120at 7.033 kb on - strand, within MCAODC_00120at 7.053 kb on + strand, within MCAODC_00120at 7.091 kb on + strand, within MCAODC_00120at 7.091 kb on + strand, within MCAODC_00120at 7.095 kb on + strand, within MCAODC_00120at 7.096 kb on - strand, within MCAODC_00120at 7.096 kb on - strand, within MCAODC_00120at 7.170 kb on + strand, within MCAODC_00120at 7.171 kb on - strand, within MCAODC_00120at 7.180 kb on + strand, within MCAODC_00120at 7.204 kb on + strand, within MCAODC_00120at 7.205 kb on - strand, within MCAODC_00120at 7.236 kb on + strand, within MCAODC_00120at 7.348 kb on - strand, within MCAODC_00120at 7.427 kb on - strand, within MCAODC_00120at 7.498 kb on + strandat 7.498 kb on + strandat 7.570 kb on + strand, within MCAODC_00125at 7.897 kb on + strandat 7.899 kb on + strandat 8.213 kb on - strand, within MCAODC_00130at 8.378 kb on + strand, within MCAODC_00130at 8.379 kb on - strand, within MCAODC_00130at 8.458 kb on - strand, within MCAODC_00130at 8.458 kb on - strand, within MCAODC_00130at 8.465 kb on - strand, within MCAODC_00130at 8.465 kb on - strand, within MCAODC_00130at 8.465 kb on - strand, within MCAODC_00130at 8.491 kb on - strand, within MCAODC_00130

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,923 - pinE MCAODC_00110 0.17 +0.4
5,923 - pinE MCAODC_00110 0.17 -2.3
5,954 + pinE MCAODC_00110 0.23 +0.3
5,954 + pinE MCAODC_00110 0.23 +0.3
5,955 - pinE MCAODC_00110 0.23 +0.1
5,955 - pinE MCAODC_00110 0.23 -0.3
6,093 - pinE MCAODC_00110 0.48 +0.2
6,099 - pinE MCAODC_00110 0.49 +0.2
6,105 - pinE MCAODC_00110 0.50 +0.1
6,105 - pinE MCAODC_00110 0.50 -0.3
6,273 - pinE MCAODC_00110 0.80 -0.7
6,280 - pinE MCAODC_00110 0.81 +0.4
6,326 + pinE MCAODC_00110 0.90 -0.5
6,327 - pinE MCAODC_00110 0.90 -2.7
6,327 - pinE MCAODC_00110 0.90 +0.2
6,327 - pinE MCAODC_00110 0.90 -0.3
6,366 + -0.4
6,366 + +0.2
6,366 + -1.7
6,366 + +1.7
6,366 + -0.8
6,367 - +1.8
6,367 - -0.8
6,367 - +0.6
6,367 - +0.4
6,367 - +0.3
6,367 - +1.0
6,367 - -2.8
6,367 - +1.0
6,367 - +0.0
6,367 - -1.3
6,370 + +0.3
6,371 - -0.3
6,371 - +0.7
6,371 - -1.5
6,377 + +0.1
6,378 - -0.8
6,386 + -0.7
6,386 + -1.2
6,387 - +1.0
6,476 - MCAODC_00115 0.13 -0.9
6,517 + MCAODC_00115 0.21 +0.0
6,517 + MCAODC_00115 0.21 -0.1
6,517 + MCAODC_00115 0.21 -0.2
6,517 + MCAODC_00115 0.21 -0.4
6,518 - MCAODC_00115 0.21 +0.5
6,541 + MCAODC_00115 0.26 +0.1
6,541 + MCAODC_00115 0.26 -0.5
6,542 - MCAODC_00115 0.26 +0.4
6,621 + MCAODC_00115 0.42 +0.1
6,622 - MCAODC_00115 0.42 -1.3
6,624 + MCAODC_00115 0.43 +0.6
6,625 - MCAODC_00115 0.43 +0.6
6,652 + MCAODC_00115 0.48 -0.7
6,653 - MCAODC_00115 0.48 -0.5
6,712 + MCAODC_00115 0.60 +0.1
6,713 - MCAODC_00115 0.61 +0.6
6,883 + +0.4
6,884 - -1.8
6,906 - +0.4
6,970 + MCAODC_00120 0.11 +0.7
6,971 - MCAODC_00120 0.11 -2.3
6,992 - MCAODC_00120 0.14 +0.9
7,012 + MCAODC_00120 0.18 -0.2
7,013 - MCAODC_00120 0.18 +0.4
7,014 + MCAODC_00120 0.18 -1.6
7,015 - MCAODC_00120 0.18 +3.0
7,017 + MCAODC_00120 0.19 -3.2
7,018 - MCAODC_00120 0.19 -0.7
7,033 - MCAODC_00120 0.21 +1.0
7,033 - MCAODC_00120 0.21 +0.2
7,053 + MCAODC_00120 0.25 -0.9
7,091 + MCAODC_00120 0.31 +2.2
7,091 + MCAODC_00120 0.31 -0.7
7,095 + MCAODC_00120 0.32 -1.8
7,096 - MCAODC_00120 0.32 +0.3
7,096 - MCAODC_00120 0.32 +1.3
7,170 + MCAODC_00120 0.44 -1.4
7,171 - MCAODC_00120 0.44 +0.8
7,180 + MCAODC_00120 0.46 +0.9
7,204 + MCAODC_00120 0.50 +1.2
7,205 - MCAODC_00120 0.50 +0.6
7,236 + MCAODC_00120 0.55 -1.2
7,348 - MCAODC_00120 0.74 +0.9
7,427 - MCAODC_00120 0.88 -0.2
7,498 + +0.8
7,498 + -0.5
7,570 + MCAODC_00125 0.22 -1.3
7,897 + -1.2
7,899 + -0.2
8,213 - MCAODC_00130 0.39 -0.8
8,378 + MCAODC_00130 0.62 -0.0
8,379 - MCAODC_00130 0.62 -1.2
8,458 - MCAODC_00130 0.73 -2.5
8,458 - MCAODC_00130 0.73 -0.9
8,465 - MCAODC_00130 0.74 -0.8
8,465 - MCAODC_00130 0.74 +0.9
8,465 - MCAODC_00130 0.74 +0.0
8,491 - MCAODC_00130 0.78 +0.0

Or see this region's nucleotide sequence