Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS16835 and A4249_RS16840 are separated by 3 nucleotides A4249_RS16840 and A4249_RS16845 overlap by 4 nucleotides A4249_RS16845 and A4249_RS15915 overlap by 4 nucleotides A4249_RS15915 and A4249_RS15920 are separated by 141 nucleotides
A4249_RS16835: A4249_RS16835 - cell envelope integrity protein TolA, at 3,209,707 to 3,210,585
_RS16835
A4249_RS16840: A4249_RS16840 - hypothetical protein, at 3,210,589 to 3,210,750
_RS16840
A4249_RS16845: A4249_RS16845 - hypothetical protein, at 3,210,747 to 3,211,022
_RS16845
A4249_RS15915: A4249_RS15915 - hypothetical protein, at 3,211,019 to 3,211,252
_RS15915
A4249_RS15920: A4249_RS15920 - Tol-Pal system beta propeller repeat protein TolB, at 3,211,394 to 3,212,758
_RS15920
Position (kb)
3211
3212 Strain fitness (log2 ratio)
-2
-1
0
1 at 3210.598 kb on + strand at 3210.598 kb on + strand at 3210.598 kb on + strand at 3210.598 kb on + strand at 3210.599 kb on - strand at 3210.599 kb on - strand at 3210.599 kb on - strand at 3210.599 kb on - strand at 3210.599 kb on - strand at 3210.600 kb on + strand at 3210.600 kb on + strand at 3210.600 kb on + strand at 3210.600 kb on + strand at 3210.600 kb on + strand at 3210.600 kb on + strand at 3210.601 kb on - strand at 3210.601 kb on - strand at 3210.601 kb on - strand at 3210.601 kb on - strand at 3210.601 kb on - strand at 3210.601 kb on - strand at 3210.601 kb on - strand at 3210.601 kb on - strand at 3210.601 kb on - strand at 3210.701 kb on + strand, within A4249_RS16840 at 3210.701 kb on + strand, within A4249_RS16840 at 3210.701 kb on + strand, within A4249_RS16840 at 3210.701 kb on + strand, within A4249_RS16840 at 3210.701 kb on + strand, within A4249_RS16840 at 3210.701 kb on + strand, within A4249_RS16840 at 3210.701 kb on + strand, within A4249_RS16840 at 3210.701 kb on + strand, within A4249_RS16840 at 3210.701 kb on + strand, within A4249_RS16840 at 3210.702 kb on - strand, within A4249_RS16840 at 3210.702 kb on - strand, within A4249_RS16840 at 3210.702 kb on - strand, within A4249_RS16840 at 3210.702 kb on - strand, within A4249_RS16840 at 3210.702 kb on - strand, within A4249_RS16840 at 3210.702 kb on - strand, within A4249_RS16840 at 3210.702 kb on - strand, within A4249_RS16840 at 3210.702 kb on - strand, within A4249_RS16840 at 3210.702 kb on - strand, within A4249_RS16840 at 3210.702 kb on - strand, within A4249_RS16840 at 3210.702 kb on - strand, within A4249_RS16840 at 3210.702 kb on - strand, within A4249_RS16840 at 3210.702 kb on - strand, within A4249_RS16840 at 3210.702 kb on - strand, within A4249_RS16840 at 3210.705 kb on + strand, within A4249_RS16840 at 3210.705 kb on + strand, within A4249_RS16840 at 3210.705 kb on + strand, within A4249_RS16840 at 3210.705 kb on + strand, within A4249_RS16840 at 3210.706 kb on - strand, within A4249_RS16840 at 3210.706 kb on - strand, within A4249_RS16840 at 3210.706 kb on - strand, within A4249_RS16840 at 3210.706 kb on - strand, within A4249_RS16840 at 3210.726 kb on + strand, within A4249_RS16840 at 3210.727 kb on - strand, within A4249_RS16840 at 3210.727 kb on - strand, within A4249_RS16840 at 3210.727 kb on - strand, within A4249_RS16840 at 3210.860 kb on - strand, within A4249_RS16845 at 3210.860 kb on - strand, within A4249_RS16845 at 3210.969 kb on - strand, within A4249_RS16845 at 3211.243 kb on + strand at 3211.243 kb on + strand at 3211.243 kb on + strand at 3211.244 kb on - strand at 3211.244 kb on - strand at 3211.244 kb on - strand at 3211.258 kb on + strand at 3211.258 kb on + strand at 3211.259 kb on - strand at 3211.259 kb on - strand at 3211.263 kb on + strand at 3211.263 kb on + strand at 3211.264 kb on - strand at 3211.264 kb on - strand at 3211.380 kb on + strand at 3211.380 kb on + strand at 3211.380 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 3,210,598 + -0.5 3,210,598 + -1.5 3,210,598 + -0.2 3,210,598 + -0.3 3,210,599 - +0.2 3,210,599 - -0.1 3,210,599 - -1.6 3,210,599 - -0.3 3,210,599 - +0.7 3,210,600 + +0.3 3,210,600 + +1.4 3,210,600 + -0.2 3,210,600 + -0.1 3,210,600 + +0.1 3,210,600 + +0.0 3,210,601 - +1.0 3,210,601 - -1.1 3,210,601 - +0.3 3,210,601 - +0.2 3,210,601 - +0.0 3,210,601 - -0.6 3,210,601 - +0.4 3,210,601 - +0.7 3,210,601 - -0.2 3,210,701 + A4249_RS16840 0.69 -0.4 3,210,701 + A4249_RS16840 0.69 -0.4 3,210,701 + A4249_RS16840 0.69 -1.8 3,210,701 + A4249_RS16840 0.69 +0.3 3,210,701 + A4249_RS16840 0.69 -0.9 3,210,701 + A4249_RS16840 0.69 -1.4 3,210,701 + A4249_RS16840 0.69 -0.3 3,210,701 + A4249_RS16840 0.69 -0.3 3,210,701 + A4249_RS16840 0.69 -0.5 3,210,702 - A4249_RS16840 0.70 -1.1 3,210,702 - A4249_RS16840 0.70 -0.6 3,210,702 - A4249_RS16840 0.70 -0.6 3,210,702 - A4249_RS16840 0.70 +0.6 3,210,702 - A4249_RS16840 0.70 -0.2 3,210,702 - A4249_RS16840 0.70 -0.2 3,210,702 - A4249_RS16840 0.70 -0.0 3,210,702 - A4249_RS16840 0.70 +0.8 3,210,702 - A4249_RS16840 0.70 +0.2 3,210,702 - A4249_RS16840 0.70 +0.0 3,210,702 - A4249_RS16840 0.70 +0.3 3,210,702 - A4249_RS16840 0.70 -1.0 3,210,702 - A4249_RS16840 0.70 -0.1 3,210,702 - A4249_RS16840 0.70 -0.1 3,210,705 + A4249_RS16840 0.72 -0.4 3,210,705 + A4249_RS16840 0.72 -0.6 3,210,705 + A4249_RS16840 0.72 -0.6 3,210,705 + A4249_RS16840 0.72 -0.4 3,210,706 - A4249_RS16840 0.72 -0.7 3,210,706 - A4249_RS16840 0.72 +0.1 3,210,706 - A4249_RS16840 0.72 +0.4 3,210,706 - A4249_RS16840 0.72 +0.9 3,210,726 + A4249_RS16840 0.85 +0.1 3,210,727 - A4249_RS16840 0.85 +0.4 3,210,727 - A4249_RS16840 0.85 -0.1 3,210,727 - A4249_RS16840 0.85 -0.4 3,210,860 - A4249_RS16845 0.41 +0.4 3,210,860 - A4249_RS16845 0.41 -0.6 3,210,969 - A4249_RS16845 0.80 +0.4 3,211,243 + +1.2 3,211,243 + -0.5 3,211,243 + +0.3 3,211,244 - -0.3 3,211,244 - +0.2 3,211,244 - -0.6 3,211,258 + -0.6 3,211,258 + +0.6 3,211,259 - +1.3 3,211,259 - -1.1 3,211,263 + -0.4 3,211,263 + +0.6 3,211,264 - -1.3 3,211,264 - -0.3 3,211,380 + +0.5 3,211,380 + +0.4 3,211,380 + +0.9
Or see this region's nucleotide sequence