Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15880

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15870 and A4249_RS15875 are separated by 5 nucleotidesA4249_RS15875 and A4249_RS15880 overlap by 4 nucleotidesA4249_RS15880 and A4249_RS15885 are separated by 5 nucleotidesA4249_RS15885 and A4249_RS15890 are separated by 25 nucleotides A4249_RS15870: A4249_RS15870 - alpha/beta fold hydrolase, at 3,204,728 to 3,206,194 _RS15870 A4249_RS15875: A4249_RS15875 - hypothetical protein, at 3,206,200 to 3,206,568 _RS15875 A4249_RS15880: A4249_RS15880 - hypothetical protein, at 3,206,565 to 3,207,428 _RS15880 A4249_RS15885: A4249_RS15885 - tol-pal system-associated acyl-CoA thioesterase, at 3,207,434 to 3,207,892 _RS15885 A4249_RS15890: A4249_RS15890 - hypothetical protein, at 3,207,918 to 3,208,352 _RS15890 Position (kb) 3206 3207 3208Strain fitness (log2 ratio) -2 -1 0 1at 3205.643 kb on + strand, within A4249_RS15870at 3205.643 kb on + strand, within A4249_RS15870at 3205.643 kb on + strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.645 kb on + strand, within A4249_RS15870at 3205.646 kb on - strand, within A4249_RS15870at 3205.739 kb on + strand, within A4249_RS15870at 3205.739 kb on + strand, within A4249_RS15870at 3205.739 kb on + strand, within A4249_RS15870at 3205.740 kb on - strand, within A4249_RS15870at 3205.740 kb on - strand, within A4249_RS15870at 3205.742 kb on + strand, within A4249_RS15870at 3205.742 kb on + strand, within A4249_RS15870at 3206.015 kb on + strand, within A4249_RS15870at 3206.015 kb on + strand, within A4249_RS15870at 3206.034 kb on + strand, within A4249_RS15870at 3206.035 kb on - strand, within A4249_RS15870at 3206.527 kb on + strand, within A4249_RS15875at 3206.527 kb on + strand, within A4249_RS15875at 3206.527 kb on + strand, within A4249_RS15875at 3206.527 kb on + strand, within A4249_RS15875at 3206.528 kb on - strand, within A4249_RS15875at 3206.597 kb on - strandat 3206.597 kb on - strandat 3206.597 kb on - strandat 3206.597 kb on - strandat 3206.864 kb on + strand, within A4249_RS15880at 3206.864 kb on + strand, within A4249_RS15880at 3206.865 kb on - strand, within A4249_RS15880at 3206.865 kb on - strand, within A4249_RS15880at 3206.865 kb on - strand, within A4249_RS15880at 3206.865 kb on - strand, within A4249_RS15880at 3206.865 kb on - strand, within A4249_RS15880at 3207.135 kb on + strand, within A4249_RS15880at 3207.135 kb on + strand, within A4249_RS15880at 3207.136 kb on - strand, within A4249_RS15880at 3207.136 kb on - strand, within A4249_RS15880at 3207.136 kb on - strand, within A4249_RS15880at 3207.136 kb on - strand, within A4249_RS15880at 3207.328 kb on - strand, within A4249_RS15880at 3207.348 kb on + strandat 3207.349 kb on - strandat 3207.395 kb on + strandat 3207.395 kb on + strandat 3207.396 kb on - strandat 3207.497 kb on + strand, within A4249_RS15885at 3207.497 kb on + strand, within A4249_RS15885at 3207.498 kb on - strand, within A4249_RS15885at 3207.498 kb on - strand, within A4249_RS15885at 3207.498 kb on - strand, within A4249_RS15885at 3207.498 kb on - strand, within A4249_RS15885at 3207.501 kb on - strand, within A4249_RS15885at 3207.530 kb on + strand, within A4249_RS15885at 3207.530 kb on + strand, within A4249_RS15885at 3207.530 kb on + strand, within A4249_RS15885at 3207.531 kb on - strand, within A4249_RS15885at 3207.531 kb on - strand, within A4249_RS15885at 3207.531 kb on - strand, within A4249_RS15885at 3207.542 kb on + strand, within A4249_RS15885at 3207.542 kb on + strand, within A4249_RS15885at 3207.542 kb on + strand, within A4249_RS15885at 3207.542 kb on + strand, within A4249_RS15885at 3207.542 kb on + strand, within A4249_RS15885at 3207.542 kb on + strand, within A4249_RS15885at 3207.543 kb on - strand, within A4249_RS15885at 3207.543 kb on - strand, within A4249_RS15885at 3207.543 kb on - strand, within A4249_RS15885at 3207.543 kb on - strand, within A4249_RS15885at 3207.543 kb on - strand, within A4249_RS15885at 3207.543 kb on - strand, within A4249_RS15885at 3207.543 kb on - strand, within A4249_RS15885at 3207.543 kb on - strand, within A4249_RS15885at 3207.543 kb on - strand, within A4249_RS15885at 3207.543 kb on - strand, within A4249_RS15885at 3207.543 kb on - strand, within A4249_RS15885at 3207.543 kb on - strand, within A4249_RS15885at 3207.543 kb on - strand, within A4249_RS15885at 3207.543 kb on - strand, within A4249_RS15885at 3207.543 kb on - strand, within A4249_RS15885at 3207.543 kb on - strand, within A4249_RS15885at 3207.551 kb on + strand, within A4249_RS15885at 3207.552 kb on - strand, within A4249_RS15885at 3207.657 kb on + strand, within A4249_RS15885at 3207.657 kb on + strand, within A4249_RS15885at 3207.657 kb on + strand, within A4249_RS15885at 3207.657 kb on + strand, within A4249_RS15885at 3207.658 kb on - strand, within A4249_RS15885at 3207.658 kb on - strand, within A4249_RS15885at 3207.658 kb on - strand, within A4249_RS15885at 3207.658 kb on - strand, within A4249_RS15885at 3207.658 kb on - strand, within A4249_RS15885at 3207.662 kb on + strand, within A4249_RS15885at 3207.662 kb on + strand, within A4249_RS15885at 3207.663 kb on - strand, within A4249_RS15885at 3207.693 kb on + strand, within A4249_RS15885at 3207.711 kb on - strand, within A4249_RS15885at 3207.890 kb on + strandat 3207.890 kb on + strandat 3207.890 kb on + strandat 3207.933 kb on + strandat 3207.933 kb on + strandat 3207.934 kb on - strandat 3207.934 kb on - strandat 3208.014 kb on + strand, within A4249_RS15890at 3208.015 kb on - strand, within A4249_RS15890at 3208.015 kb on - strand, within A4249_RS15890at 3208.015 kb on - strand, within A4249_RS15890at 3208.015 kb on - strand, within A4249_RS15890at 3208.017 kb on + strand, within A4249_RS15890at 3208.017 kb on + strand, within A4249_RS15890at 3208.017 kb on + strand, within A4249_RS15890at 3208.017 kb on + strand, within A4249_RS15890at 3208.017 kb on + strand, within A4249_RS15890at 3208.017 kb on + strand, within A4249_RS15890at 3208.017 kb on + strand, within A4249_RS15890at 3208.017 kb on + strand, within A4249_RS15890at 3208.017 kb on + strand, within A4249_RS15890at 3208.017 kb on + strand, within A4249_RS15890at 3208.017 kb on + strand, within A4249_RS15890at 3208.018 kb on - strand, within A4249_RS15890at 3208.018 kb on - strand, within A4249_RS15890at 3208.018 kb on - strand, within A4249_RS15890at 3208.018 kb on - strand, within A4249_RS15890at 3208.018 kb on - strand, within A4249_RS15890at 3208.018 kb on - strand, within A4249_RS15890at 3208.018 kb on - strand, within A4249_RS15890at 3208.021 kb on - strand, within A4249_RS15890at 3208.062 kb on + strand, within A4249_RS15890at 3208.062 kb on + strand, within A4249_RS15890at 3208.063 kb on - strand, within A4249_RS15890at 3208.063 kb on - strand, within A4249_RS15890at 3208.063 kb on - strand, within A4249_RS15890at 3208.063 kb on - strand, within A4249_RS15890at 3208.251 kb on + strand, within A4249_RS15890at 3208.251 kb on + strand, within A4249_RS15890at 3208.251 kb on + strand, within A4249_RS15890at 3208.251 kb on + strand, within A4249_RS15890at 3208.251 kb on + strand, within A4249_RS15890at 3208.251 kb on + strand, within A4249_RS15890at 3208.251 kb on + strand, within A4249_RS15890at 3208.252 kb on - strand, within A4249_RS15890at 3208.252 kb on - strand, within A4249_RS15890at 3208.252 kb on - strand, within A4249_RS15890at 3208.254 kb on + strand, within A4249_RS15890

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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3,205,643 + A4249_RS15870 0.62 -0.6
3,205,643 + A4249_RS15870 0.62 -1.1
3,205,643 + A4249_RS15870 0.62 +0.0
3,205,644 - A4249_RS15870 0.62 +0.4
3,205,644 - A4249_RS15870 0.62 -0.1
3,205,644 - A4249_RS15870 0.62 -0.8
3,205,644 - A4249_RS15870 0.62 -0.6
3,205,644 - A4249_RS15870 0.62 +0.9
3,205,644 - A4249_RS15870 0.62 +0.2
3,205,645 + A4249_RS15870 0.63 +0.7
3,205,646 - A4249_RS15870 0.63 +0.5
3,205,739 + A4249_RS15870 0.69 -0.3
3,205,739 + A4249_RS15870 0.69 +0.2
3,205,739 + A4249_RS15870 0.69 +0.0
3,205,740 - A4249_RS15870 0.69 -0.4
3,205,740 - A4249_RS15870 0.69 -1.3
3,205,742 + A4249_RS15870 0.69 +0.3
3,205,742 + A4249_RS15870 0.69 +1.7
3,206,015 + A4249_RS15870 0.88 -0.7
3,206,015 + A4249_RS15870 0.88 -0.2
3,206,034 + A4249_RS15870 0.89 +0.4
3,206,035 - A4249_RS15870 0.89 -1.8
3,206,527 + A4249_RS15875 0.89 +1.2
3,206,527 + A4249_RS15875 0.89 -1.3
3,206,527 + A4249_RS15875 0.89 -0.6
3,206,527 + A4249_RS15875 0.89 +0.3
3,206,528 - A4249_RS15875 0.89 -0.2
3,206,597 - -0.5
3,206,597 - +0.4
3,206,597 - -0.2
3,206,597 - +0.4
3,206,864 + A4249_RS15880 0.35 -0.2
3,206,864 + A4249_RS15880 0.35 +0.2
3,206,865 - A4249_RS15880 0.35 +0.3
3,206,865 - A4249_RS15880 0.35 -0.2
3,206,865 - A4249_RS15880 0.35 -0.1
3,206,865 - A4249_RS15880 0.35 +0.2
3,206,865 - A4249_RS15880 0.35 +0.5
3,207,135 + A4249_RS15880 0.66 +0.5
3,207,135 + A4249_RS15880 0.66 +0.4
3,207,136 - A4249_RS15880 0.66 +0.7
3,207,136 - A4249_RS15880 0.66 +0.3
3,207,136 - A4249_RS15880 0.66 +0.7
3,207,136 - A4249_RS15880 0.66 +0.5
3,207,328 - A4249_RS15880 0.88 -0.5
3,207,348 + -0.0
3,207,349 - +0.0
3,207,395 + +0.2
3,207,395 + -1.1
3,207,396 - +0.4
3,207,497 + A4249_RS15885 0.14 +0.0
3,207,497 + A4249_RS15885 0.14 -0.1
3,207,498 - A4249_RS15885 0.14 +0.4
3,207,498 - A4249_RS15885 0.14 -0.5
3,207,498 - A4249_RS15885 0.14 +0.0
3,207,498 - A4249_RS15885 0.14 -0.1
3,207,501 - A4249_RS15885 0.15 -0.1
3,207,530 + A4249_RS15885 0.21 +0.3
3,207,530 + A4249_RS15885 0.21 -0.7
3,207,530 + A4249_RS15885 0.21 +1.4
3,207,531 - A4249_RS15885 0.21 -0.3
3,207,531 - A4249_RS15885 0.21 +0.0
3,207,531 - A4249_RS15885 0.21 -0.1
3,207,542 + A4249_RS15885 0.24 +0.1
3,207,542 + A4249_RS15885 0.24 -0.2
3,207,542 + A4249_RS15885 0.24 -0.2
3,207,542 + A4249_RS15885 0.24 +0.3
3,207,542 + A4249_RS15885 0.24 -0.3
3,207,542 + A4249_RS15885 0.24 +0.4
3,207,543 - A4249_RS15885 0.24 +0.6
3,207,543 - A4249_RS15885 0.24 -0.3
3,207,543 - A4249_RS15885 0.24 -0.6
3,207,543 - A4249_RS15885 0.24 -0.6
3,207,543 - A4249_RS15885 0.24 +0.3
3,207,543 - A4249_RS15885 0.24 +0.1
3,207,543 - A4249_RS15885 0.24 -0.3
3,207,543 - A4249_RS15885 0.24 -0.0
3,207,543 - A4249_RS15885 0.24 -0.2
3,207,543 - A4249_RS15885 0.24 +0.2
3,207,543 - A4249_RS15885 0.24 +0.3
3,207,543 - A4249_RS15885 0.24 -0.2
3,207,543 - A4249_RS15885 0.24 -0.3
3,207,543 - A4249_RS15885 0.24 -0.3
3,207,543 - A4249_RS15885 0.24 -0.3
3,207,543 - A4249_RS15885 0.24 -0.2
3,207,551 + A4249_RS15885 0.25 -0.3
3,207,552 - A4249_RS15885 0.26 +0.2
3,207,657 + A4249_RS15885 0.49 -0.4
3,207,657 + A4249_RS15885 0.49 -0.7
3,207,657 + A4249_RS15885 0.49 -0.2
3,207,657 + A4249_RS15885 0.49 +0.7
3,207,658 - A4249_RS15885 0.49 -0.3
3,207,658 - A4249_RS15885 0.49 -0.6
3,207,658 - A4249_RS15885 0.49 +0.6
3,207,658 - A4249_RS15885 0.49 -0.6
3,207,658 - A4249_RS15885 0.49 -0.3
3,207,662 + A4249_RS15885 0.50 -0.3
3,207,662 + A4249_RS15885 0.50 -0.2
3,207,663 - A4249_RS15885 0.50 +0.9
3,207,693 + A4249_RS15885 0.56 -1.1
3,207,711 - A4249_RS15885 0.60 +0.7
3,207,890 + -0.0
3,207,890 + -0.1
3,207,890 + +0.2
3,207,933 + -0.1
3,207,933 + -0.3
3,207,934 - -0.2
3,207,934 - -0.3
3,208,014 + A4249_RS15890 0.22 -0.2
3,208,015 - A4249_RS15890 0.22 -0.2
3,208,015 - A4249_RS15890 0.22 +0.0
3,208,015 - A4249_RS15890 0.22 -0.7
3,208,015 - A4249_RS15890 0.22 -1.6
3,208,017 + A4249_RS15890 0.23 +0.1
3,208,017 + A4249_RS15890 0.23 -0.4
3,208,017 + A4249_RS15890 0.23 +0.7
3,208,017 + A4249_RS15890 0.23 +0.2
3,208,017 + A4249_RS15890 0.23 -0.4
3,208,017 + A4249_RS15890 0.23 +0.7
3,208,017 + A4249_RS15890 0.23 -0.1
3,208,017 + A4249_RS15890 0.23 +0.0
3,208,017 + A4249_RS15890 0.23 -0.8
3,208,017 + A4249_RS15890 0.23 -0.3
3,208,017 + A4249_RS15890 0.23 +0.1
3,208,018 - A4249_RS15890 0.23 -0.5
3,208,018 - A4249_RS15890 0.23 -1.3
3,208,018 - A4249_RS15890 0.23 +0.3
3,208,018 - A4249_RS15890 0.23 +0.1
3,208,018 - A4249_RS15890 0.23 +0.1
3,208,018 - A4249_RS15890 0.23 +0.7
3,208,018 - A4249_RS15890 0.23 +0.6
3,208,021 - A4249_RS15890 0.24 +0.7
3,208,062 + A4249_RS15890 0.33 +0.0
3,208,062 + A4249_RS15890 0.33 +0.2
3,208,063 - A4249_RS15890 0.33 +0.6
3,208,063 - A4249_RS15890 0.33 +0.6
3,208,063 - A4249_RS15890 0.33 -0.1
3,208,063 - A4249_RS15890 0.33 -0.3
3,208,251 + A4249_RS15890 0.77 +0.2
3,208,251 + A4249_RS15890 0.77 -0.4
3,208,251 + A4249_RS15890 0.77 +1.0
3,208,251 + A4249_RS15890 0.77 -0.5
3,208,251 + A4249_RS15890 0.77 +0.5
3,208,251 + A4249_RS15890 0.77 -0.1
3,208,251 + A4249_RS15890 0.77 +0.0
3,208,252 - A4249_RS15890 0.77 -0.5
3,208,252 - A4249_RS15890 0.77 +0.2
3,208,252 - A4249_RS15890 0.77 -0.1
3,208,254 + A4249_RS15890 0.77 +0.7

Or see this region's nucleotide sequence