Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15190

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15185 and A4249_RS15190 are separated by 68 nucleotidesA4249_RS15190 and A4249_RS15195 are separated by 4 nucleotides A4249_RS15185: A4249_RS15185 - bile acid:sodium symporter, at 3,069,175 to 3,070,170 _RS15185 A4249_RS15190: A4249_RS15190 - acetate--CoA ligase, at 3,070,239 to 3,072,194 _RS15190 A4249_RS15195: A4249_RS15195 - DcaP family trimeric outer membrane transporter, at 3,072,199 to 3,073,551 _RS15195 Position (kb) 3070 3071 3072 3073Strain fitness (log2 ratio) -1 0 1at 3069.536 kb on + strand, within A4249_RS15185at 3069.536 kb on + strand, within A4249_RS15185at 3069.536 kb on + strand, within A4249_RS15185at 3069.536 kb on + strand, within A4249_RS15185at 3069.537 kb on - strand, within A4249_RS15185at 3069.851 kb on + strand, within A4249_RS15185at 3069.851 kb on + strand, within A4249_RS15185at 3069.851 kb on + strand, within A4249_RS15185at 3069.851 kb on + strand, within A4249_RS15185at 3069.851 kb on + strand, within A4249_RS15185at 3069.852 kb on - strand, within A4249_RS15185at 3069.852 kb on - strand, within A4249_RS15185at 3069.852 kb on - strand, within A4249_RS15185at 3069.852 kb on - strand, within A4249_RS15185at 3069.852 kb on - strand, within A4249_RS15185at 3069.852 kb on - strand, within A4249_RS15185at 3069.852 kb on - strand, within A4249_RS15185at 3069.852 kb on - strand, within A4249_RS15185at 3069.852 kb on - strand, within A4249_RS15185at 3069.852 kb on - strand, within A4249_RS15185at 3070.017 kb on - strand, within A4249_RS15185at 3070.017 kb on - strand, within A4249_RS15185at 3070.133 kb on + strandat 3070.205 kb on + strandat 3070.205 kb on + strandat 3070.205 kb on + strandat 3070.206 kb on - strandat 3070.206 kb on - strandat 3070.206 kb on - strandat 3070.206 kb on - strandat 3070.501 kb on + strand, within A4249_RS15190at 3070.501 kb on + strand, within A4249_RS15190at 3070.501 kb on + strand, within A4249_RS15190at 3070.501 kb on + strand, within A4249_RS15190at 3070.501 kb on + strand, within A4249_RS15190at 3070.501 kb on + strand, within A4249_RS15190at 3070.501 kb on + strand, within A4249_RS15190at 3070.501 kb on + strand, within A4249_RS15190at 3070.501 kb on + strand, within A4249_RS15190at 3070.501 kb on + strand, within A4249_RS15190at 3070.502 kb on - strand, within A4249_RS15190at 3070.502 kb on - strand, within A4249_RS15190at 3070.502 kb on - strand, within A4249_RS15190at 3070.502 kb on - strand, within A4249_RS15190at 3070.507 kb on + strand, within A4249_RS15190at 3070.507 kb on + strand, within A4249_RS15190at 3070.507 kb on + strand, within A4249_RS15190at 3070.507 kb on + strand, within A4249_RS15190at 3070.507 kb on + strand, within A4249_RS15190at 3070.507 kb on + strand, within A4249_RS15190at 3070.507 kb on + strand, within A4249_RS15190at 3070.507 kb on + strand, within A4249_RS15190at 3070.507 kb on + strand, within A4249_RS15190at 3070.507 kb on + strand, within A4249_RS15190at 3070.507 kb on + strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.508 kb on - strand, within A4249_RS15190at 3070.657 kb on + strand, within A4249_RS15190at 3070.657 kb on + strand, within A4249_RS15190at 3070.657 kb on + strand, within A4249_RS15190at 3070.658 kb on - strand, within A4249_RS15190at 3070.658 kb on - strand, within A4249_RS15190at 3070.658 kb on - strand, within A4249_RS15190at 3070.660 kb on + strand, within A4249_RS15190at 3070.661 kb on - strand, within A4249_RS15190at 3070.661 kb on - strand, within A4249_RS15190at 3070.699 kb on + strand, within A4249_RS15190at 3070.700 kb on - strand, within A4249_RS15190at 3070.700 kb on - strand, within A4249_RS15190at 3070.711 kb on + strand, within A4249_RS15190at 3070.712 kb on - strand, within A4249_RS15190at 3070.712 kb on - strand, within A4249_RS15190at 3070.723 kb on + strand, within A4249_RS15190at 3070.723 kb on + strand, within A4249_RS15190at 3070.723 kb on + strand, within A4249_RS15190at 3070.724 kb on - strand, within A4249_RS15190at 3070.724 kb on - strand, within A4249_RS15190at 3070.724 kb on - strand, within A4249_RS15190at 3070.724 kb on - strand, within A4249_RS15190at 3070.724 kb on - strand, within A4249_RS15190at 3070.724 kb on - strand, within A4249_RS15190at 3070.724 kb on - strand, within A4249_RS15190at 3070.754 kb on - strand, within A4249_RS15190at 3070.754 kb on - strand, within A4249_RS15190at 3070.754 kb on - strand, within A4249_RS15190at 3070.993 kb on + strand, within A4249_RS15190at 3071.123 kb on - strand, within A4249_RS15190at 3071.179 kb on + strand, within A4249_RS15190at 3071.180 kb on - strand, within A4249_RS15190at 3071.233 kb on + strand, within A4249_RS15190at 3071.234 kb on - strand, within A4249_RS15190at 3071.234 kb on - strand, within A4249_RS15190at 3071.240 kb on + strand, within A4249_RS15190at 3071.240 kb on + strand, within A4249_RS15190at 3071.240 kb on + strand, within A4249_RS15190at 3071.240 kb on + strand, within A4249_RS15190at 3071.240 kb on + strand, within A4249_RS15190at 3071.240 kb on + strand, within A4249_RS15190at 3071.241 kb on - strand, within A4249_RS15190at 3071.241 kb on - strand, within A4249_RS15190at 3071.242 kb on + strand, within A4249_RS15190at 3071.242 kb on + strand, within A4249_RS15190at 3071.242 kb on + strand, within A4249_RS15190at 3071.242 kb on + strand, within A4249_RS15190at 3071.242 kb on + strand, within A4249_RS15190at 3071.242 kb on + strand, within A4249_RS15190at 3071.242 kb on + strand, within A4249_RS15190at 3071.242 kb on + strand, within A4249_RS15190at 3071.243 kb on - strand, within A4249_RS15190at 3071.243 kb on - strand, within A4249_RS15190at 3071.243 kb on - strand, within A4249_RS15190at 3071.243 kb on - strand, within A4249_RS15190at 3071.243 kb on - strand, within A4249_RS15190at 3071.243 kb on - strand, within A4249_RS15190at 3071.243 kb on - strand, within A4249_RS15190at 3071.243 kb on - strand, within A4249_RS15190at 3071.344 kb on + strand, within A4249_RS15190at 3071.344 kb on + strand, within A4249_RS15190at 3071.345 kb on - strand, within A4249_RS15190at 3071.398 kb on + strand, within A4249_RS15190at 3071.398 kb on + strand, within A4249_RS15190at 3071.398 kb on + strand, within A4249_RS15190at 3071.399 kb on - strand, within A4249_RS15190at 3071.399 kb on - strand, within A4249_RS15190at 3071.399 kb on - strand, within A4249_RS15190at 3071.405 kb on + strand, within A4249_RS15190at 3071.405 kb on + strand, within A4249_RS15190at 3071.406 kb on - strand, within A4249_RS15190at 3071.406 kb on - strand, within A4249_RS15190at 3071.406 kb on - strand, within A4249_RS15190at 3071.406 kb on - strand, within A4249_RS15190at 3071.477 kb on - strand, within A4249_RS15190at 3071.584 kb on - strand, within A4249_RS15190at 3071.625 kb on + strand, within A4249_RS15190at 3071.625 kb on + strand, within A4249_RS15190at 3071.626 kb on - strand, within A4249_RS15190at 3071.737 kb on + strand, within A4249_RS15190at 3071.764 kb on + strand, within A4249_RS15190at 3071.764 kb on + strand, within A4249_RS15190at 3071.764 kb on + strand, within A4249_RS15190at 3071.764 kb on + strand, within A4249_RS15190at 3071.765 kb on - strand, within A4249_RS15190at 3071.765 kb on - strand, within A4249_RS15190at 3071.765 kb on - strand, within A4249_RS15190at 3071.765 kb on - strand, within A4249_RS15190at 3072.106 kb on + strandat 3072.106 kb on + strandat 3072.106 kb on + strandat 3072.107 kb on - strandat 3072.107 kb on - strandat 3072.158 kb on - strandat 3072.663 kb on - strand, within A4249_RS15195at 3072.663 kb on - strand, within A4249_RS15195at 3073.138 kb on - strand, within A4249_RS15195

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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3,069,536 + A4249_RS15185 0.36 +0.3
3,069,536 + A4249_RS15185 0.36 +1.0
3,069,536 + A4249_RS15185 0.36 -0.8
3,069,536 + A4249_RS15185 0.36 +1.3
3,069,537 - A4249_RS15185 0.36 +0.9
3,069,851 + A4249_RS15185 0.68 +0.4
3,069,851 + A4249_RS15185 0.68 -1.1
3,069,851 + A4249_RS15185 0.68 +0.5
3,069,851 + A4249_RS15185 0.68 +1.0
3,069,851 + A4249_RS15185 0.68 -0.5
3,069,852 - A4249_RS15185 0.68 +0.2
3,069,852 - A4249_RS15185 0.68 -0.1
3,069,852 - A4249_RS15185 0.68 -0.1
3,069,852 - A4249_RS15185 0.68 +0.4
3,069,852 - A4249_RS15185 0.68 +0.1
3,069,852 - A4249_RS15185 0.68 +0.6
3,069,852 - A4249_RS15185 0.68 +0.5
3,069,852 - A4249_RS15185 0.68 +0.1
3,069,852 - A4249_RS15185 0.68 +0.4
3,069,852 - A4249_RS15185 0.68 +0.5
3,070,017 - A4249_RS15185 0.85 +0.0
3,070,017 - A4249_RS15185 0.85 -1.2
3,070,133 + -0.3
3,070,205 + +0.0
3,070,205 + +0.0
3,070,205 + +0.2
3,070,206 - +0.1
3,070,206 - +0.1
3,070,206 - -0.1
3,070,206 - -1.5
3,070,501 + A4249_RS15190 0.13 +0.2
3,070,501 + A4249_RS15190 0.13 -0.6
3,070,501 + A4249_RS15190 0.13 -0.4
3,070,501 + A4249_RS15190 0.13 -0.0
3,070,501 + A4249_RS15190 0.13 +0.4
3,070,501 + A4249_RS15190 0.13 -0.6
3,070,501 + A4249_RS15190 0.13 +0.2
3,070,501 + A4249_RS15190 0.13 -0.5
3,070,501 + A4249_RS15190 0.13 +0.5
3,070,501 + A4249_RS15190 0.13 +0.1
3,070,502 - A4249_RS15190 0.13 +0.2
3,070,502 - A4249_RS15190 0.13 +1.0
3,070,502 - A4249_RS15190 0.13 +0.4
3,070,502 - A4249_RS15190 0.13 -0.5
3,070,507 + A4249_RS15190 0.14 +0.1
3,070,507 + A4249_RS15190 0.14 -0.2
3,070,507 + A4249_RS15190 0.14 +0.5
3,070,507 + A4249_RS15190 0.14 -0.3
3,070,507 + A4249_RS15190 0.14 -0.2
3,070,507 + A4249_RS15190 0.14 -0.0
3,070,507 + A4249_RS15190 0.14 +1.0
3,070,507 + A4249_RS15190 0.14 -0.3
3,070,507 + A4249_RS15190 0.14 +0.7
3,070,507 + A4249_RS15190 0.14 +0.8
3,070,507 + A4249_RS15190 0.14 -0.2
3,070,508 - A4249_RS15190 0.14 +0.2
3,070,508 - A4249_RS15190 0.14 -0.4
3,070,508 - A4249_RS15190 0.14 +0.1
3,070,508 - A4249_RS15190 0.14 +0.1
3,070,508 - A4249_RS15190 0.14 +0.2
3,070,508 - A4249_RS15190 0.14 +0.0
3,070,508 - A4249_RS15190 0.14 -0.2
3,070,508 - A4249_RS15190 0.14 -0.0
3,070,508 - A4249_RS15190 0.14 +0.1
3,070,508 - A4249_RS15190 0.14 -0.7
3,070,508 - A4249_RS15190 0.14 -0.8
3,070,508 - A4249_RS15190 0.14 +0.1
3,070,508 - A4249_RS15190 0.14 +0.1
3,070,508 - A4249_RS15190 0.14 -0.2
3,070,508 - A4249_RS15190 0.14 +0.2
3,070,508 - A4249_RS15190 0.14 -0.3
3,070,508 - A4249_RS15190 0.14 +1.0
3,070,508 - A4249_RS15190 0.14 +0.4
3,070,508 - A4249_RS15190 0.14 -0.3
3,070,508 - A4249_RS15190 0.14 +0.2
3,070,657 + A4249_RS15190 0.21 -0.4
3,070,657 + A4249_RS15190 0.21 +0.0
3,070,657 + A4249_RS15190 0.21 -0.8
3,070,658 - A4249_RS15190 0.21 -0.4
3,070,658 - A4249_RS15190 0.21 +0.6
3,070,658 - A4249_RS15190 0.21 -0.4
3,070,660 + A4249_RS15190 0.22 +0.6
3,070,661 - A4249_RS15190 0.22 -0.2
3,070,661 - A4249_RS15190 0.22 +0.3
3,070,699 + A4249_RS15190 0.24 +0.7
3,070,700 - A4249_RS15190 0.24 +0.5
3,070,700 - A4249_RS15190 0.24 -0.3
3,070,711 + A4249_RS15190 0.24 -0.0
3,070,712 - A4249_RS15190 0.24 +0.0
3,070,712 - A4249_RS15190 0.24 +0.1
3,070,723 + A4249_RS15190 0.25 +0.0
3,070,723 + A4249_RS15190 0.25 -0.2
3,070,723 + A4249_RS15190 0.25 -1.1
3,070,724 - A4249_RS15190 0.25 +0.5
3,070,724 - A4249_RS15190 0.25 -0.4
3,070,724 - A4249_RS15190 0.25 -0.4
3,070,724 - A4249_RS15190 0.25 -0.2
3,070,724 - A4249_RS15190 0.25 -1.0
3,070,724 - A4249_RS15190 0.25 +0.9
3,070,724 - A4249_RS15190 0.25 -0.6
3,070,754 - A4249_RS15190 0.26 -1.2
3,070,754 - A4249_RS15190 0.26 -0.1
3,070,754 - A4249_RS15190 0.26 -0.7
3,070,993 + A4249_RS15190 0.39 -0.2
3,071,123 - A4249_RS15190 0.45 -0.5
3,071,179 + A4249_RS15190 0.48 +0.1
3,071,180 - A4249_RS15190 0.48 -0.0
3,071,233 + A4249_RS15190 0.51 +0.3
3,071,234 - A4249_RS15190 0.51 +0.2
3,071,234 - A4249_RS15190 0.51 -0.0
3,071,240 + A4249_RS15190 0.51 -0.3
3,071,240 + A4249_RS15190 0.51 +0.2
3,071,240 + A4249_RS15190 0.51 -0.3
3,071,240 + A4249_RS15190 0.51 -0.5
3,071,240 + A4249_RS15190 0.51 -0.7
3,071,240 + A4249_RS15190 0.51 +0.5
3,071,241 - A4249_RS15190 0.51 -0.3
3,071,241 - A4249_RS15190 0.51 -0.0
3,071,242 + A4249_RS15190 0.51 +0.6
3,071,242 + A4249_RS15190 0.51 +0.4
3,071,242 + A4249_RS15190 0.51 -0.1
3,071,242 + A4249_RS15190 0.51 -0.3
3,071,242 + A4249_RS15190 0.51 +0.0
3,071,242 + A4249_RS15190 0.51 -0.5
3,071,242 + A4249_RS15190 0.51 +0.9
3,071,242 + A4249_RS15190 0.51 -0.3
3,071,243 - A4249_RS15190 0.51 -0.0
3,071,243 - A4249_RS15190 0.51 +0.1
3,071,243 - A4249_RS15190 0.51 +0.4
3,071,243 - A4249_RS15190 0.51 -0.5
3,071,243 - A4249_RS15190 0.51 +0.5
3,071,243 - A4249_RS15190 0.51 -0.7
3,071,243 - A4249_RS15190 0.51 -0.3
3,071,243 - A4249_RS15190 0.51 +0.1
3,071,344 + A4249_RS15190 0.56 +0.7
3,071,344 + A4249_RS15190 0.56 +0.3
3,071,345 - A4249_RS15190 0.57 +0.1
3,071,398 + A4249_RS15190 0.59 -0.4
3,071,398 + A4249_RS15190 0.59 -0.2
3,071,398 + A4249_RS15190 0.59 -0.0
3,071,399 - A4249_RS15190 0.59 +0.1
3,071,399 - A4249_RS15190 0.59 +0.0
3,071,399 - A4249_RS15190 0.59 -0.1
3,071,405 + A4249_RS15190 0.60 -0.0
3,071,405 + A4249_RS15190 0.60 -1.2
3,071,406 - A4249_RS15190 0.60 +0.3
3,071,406 - A4249_RS15190 0.60 -0.2
3,071,406 - A4249_RS15190 0.60 +0.2
3,071,406 - A4249_RS15190 0.60 -0.1
3,071,477 - A4249_RS15190 0.63 -0.5
3,071,584 - A4249_RS15190 0.69 -0.1
3,071,625 + A4249_RS15190 0.71 -0.3
3,071,625 + A4249_RS15190 0.71 -0.2
3,071,626 - A4249_RS15190 0.71 -0.0
3,071,737 + A4249_RS15190 0.77 -0.2
3,071,764 + A4249_RS15190 0.78 +0.9
3,071,764 + A4249_RS15190 0.78 +0.9
3,071,764 + A4249_RS15190 0.78 +0.1
3,071,764 + A4249_RS15190 0.78 +0.8
3,071,765 - A4249_RS15190 0.78 -0.5
3,071,765 - A4249_RS15190 0.78 +0.1
3,071,765 - A4249_RS15190 0.78 -0.5
3,071,765 - A4249_RS15190 0.78 -0.5
3,072,106 + +0.7
3,072,106 + -0.2
3,072,106 + -0.4
3,072,107 - +0.2
3,072,107 - +0.9
3,072,158 - +0.3
3,072,663 - A4249_RS15195 0.34 -0.1
3,072,663 - A4249_RS15195 0.34 -0.6
3,073,138 - A4249_RS15195 0.69 -1.1

Or see this region's nucleotide sequence