Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10705

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10700 and A4249_RS10705 overlap by 4 nucleotidesA4249_RS10705 and A4249_RS10710 overlap by 7 nucleotidesA4249_RS10710 and A4249_RS10715 are separated by 31 nucleotides A4249_RS10700: A4249_RS10700 - imidazoleglycerol-phosphate dehydratase HisB, at 2,151,084 to 2,152,520 _RS10700 A4249_RS10705: A4249_RS10705 - imidazole glycerol phosphate synthase subunit HisH, at 2,152,517 to 2,153,119 _RS10705 A4249_RS10710: A4249_RS10710 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 2,153,113 to 2,153,850 _RS10710 A4249_RS10715: A4249_RS10715 - imidazole glycerol phosphate synthase subunit HisF, at 2,153,882 to 2,154,649 _RS10715 Position (kb) 2152 2153 2154Strain fitness (log2 ratio) -1 0 1at 2151.538 kb on - strand, within A4249_RS10700at 2151.619 kb on - strand, within A4249_RS10700at 2151.619 kb on - strand, within A4249_RS10700at 2151.619 kb on - strand, within A4249_RS10700at 2151.619 kb on - strand, within A4249_RS10700at 2151.831 kb on + strand, within A4249_RS10700at 2151.831 kb on + strand, within A4249_RS10700at 2151.832 kb on - strand, within A4249_RS10700at 2151.832 kb on - strand, within A4249_RS10700at 2152.284 kb on + strand, within A4249_RS10700at 2152.376 kb on + strand, within A4249_RS10700at 2152.440 kb on + strandat 2152.441 kb on - strandat 2152.441 kb on - strandat 2152.441 kb on - strandat 2152.441 kb on - strandat 2152.659 kb on + strand, within A4249_RS10705at 2152.659 kb on + strand, within A4249_RS10705at 2152.660 kb on - strand, within A4249_RS10705at 2152.813 kb on + strand, within A4249_RS10705at 2152.935 kb on - strand, within A4249_RS10705at 2152.935 kb on - strand, within A4249_RS10705at 2152.935 kb on - strand, within A4249_RS10705at 2152.935 kb on - strand, within A4249_RS10705at 2152.935 kb on - strand, within A4249_RS10705at 2152.935 kb on - strand, within A4249_RS10705at 2152.940 kb on + strand, within A4249_RS10705at 2152.941 kb on - strand, within A4249_RS10705at 2152.941 kb on - strand, within A4249_RS10705at 2152.997 kb on + strand, within A4249_RS10705at 2152.998 kb on - strand, within A4249_RS10705at 2153.122 kb on + strandat 2153.123 kb on - strandat 2153.194 kb on + strand, within A4249_RS10710at 2153.195 kb on - strand, within A4249_RS10710at 2153.797 kb on + strandat 2153.916 kb on + strandat 2153.916 kb on + strandat 2153.917 kb on - strandat 2153.917 kb on - strandat 2154.029 kb on + strand, within A4249_RS10715at 2154.029 kb on + strand, within A4249_RS10715at 2154.029 kb on + strand, within A4249_RS10715at 2154.029 kb on + strand, within A4249_RS10715at 2154.029 kb on + strand, within A4249_RS10715at 2154.030 kb on - strand, within A4249_RS10715at 2154.030 kb on - strand, within A4249_RS10715at 2154.030 kb on - strand, within A4249_RS10715at 2154.030 kb on - strand, within A4249_RS10715at 2154.030 kb on - strand, within A4249_RS10715at 2154.030 kb on - strand, within A4249_RS10715at 2154.068 kb on + strand, within A4249_RS10715at 2154.068 kb on + strand, within A4249_RS10715at 2154.069 kb on - strand, within A4249_RS10715

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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2,151,538 - A4249_RS10700 0.32 -0.5
2,151,619 - A4249_RS10700 0.37 +0.1
2,151,619 - A4249_RS10700 0.37 +0.1
2,151,619 - A4249_RS10700 0.37 -0.4
2,151,619 - A4249_RS10700 0.37 -1.2
2,151,831 + A4249_RS10700 0.52 +0.1
2,151,831 + A4249_RS10700 0.52 +0.1
2,151,832 - A4249_RS10700 0.52 +0.2
2,151,832 - A4249_RS10700 0.52 +0.2
2,152,284 + A4249_RS10700 0.84 +1.0
2,152,376 + A4249_RS10700 0.90 +1.6
2,152,440 + +0.9
2,152,441 - +0.5
2,152,441 - +0.2
2,152,441 - +0.4
2,152,441 - -0.9
2,152,659 + A4249_RS10705 0.24 -0.1
2,152,659 + A4249_RS10705 0.24 -0.1
2,152,660 - A4249_RS10705 0.24 -0.6
2,152,813 + A4249_RS10705 0.49 -0.2
2,152,935 - A4249_RS10705 0.69 +0.0
2,152,935 - A4249_RS10705 0.69 +0.2
2,152,935 - A4249_RS10705 0.69 -0.2
2,152,935 - A4249_RS10705 0.69 -1.1
2,152,935 - A4249_RS10705 0.69 +0.7
2,152,935 - A4249_RS10705 0.69 -0.1
2,152,940 + A4249_RS10705 0.70 +0.8
2,152,941 - A4249_RS10705 0.70 -0.6
2,152,941 - A4249_RS10705 0.70 -0.3
2,152,997 + A4249_RS10705 0.80 +0.1
2,152,998 - A4249_RS10705 0.80 -0.5
2,153,122 + +0.1
2,153,123 - -0.1
2,153,194 + A4249_RS10710 0.11 -0.6
2,153,195 - A4249_RS10710 0.11 -0.2
2,153,797 + +1.0
2,153,916 + -0.2
2,153,916 + +0.4
2,153,917 - +1.6
2,153,917 - +0.5
2,154,029 + A4249_RS10715 0.19 +0.1
2,154,029 + A4249_RS10715 0.19 +0.5
2,154,029 + A4249_RS10715 0.19 -1.1
2,154,029 + A4249_RS10715 0.19 -1.2
2,154,029 + A4249_RS10715 0.19 -0.4
2,154,030 - A4249_RS10715 0.19 -0.2
2,154,030 - A4249_RS10715 0.19 -0.0
2,154,030 - A4249_RS10715 0.19 +0.7
2,154,030 - A4249_RS10715 0.19 +0.4
2,154,030 - A4249_RS10715 0.19 +0.2
2,154,030 - A4249_RS10715 0.19 -0.7
2,154,068 + A4249_RS10715 0.24 -0.5
2,154,068 + A4249_RS10715 0.24 -0.6
2,154,069 - A4249_RS10715 0.24 -0.9

Or see this region's nucleotide sequence