Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10115

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10105 and A4249_RS10110 are separated by 97 nucleotidesA4249_RS10110 and A4249_RS10115 are separated by 53 nucleotidesA4249_RS10115 and A4249_RS16335 overlap by 11 nucleotidesA4249_RS16335 and A4249_RS10120 overlap by 4 nucleotidesA4249_RS10120 and A4249_RS10125 overlap by 4 nucleotidesA4249_RS10125 and A4249_RS10130 overlap by 4 nucleotides A4249_RS10105: A4249_RS10105 - DUF2460 domain-containing protein, at 2,031,558 to 2,032,169 _RS10105 A4249_RS10110: A4249_RS10110 - DUF805 domain-containing protein, at 2,032,267 to 2,032,968 _RS10110 A4249_RS10115: A4249_RS10115 - phage tail tape measure protein, at 2,033,022 to 2,033,546 _RS10115 A4249_RS16335: A4249_RS16335 - phage tail assembly chaperone, at 2,033,536 to 2,033,712 _RS16335 A4249_RS10120: A4249_RS10120 - GTA-gp10 family protein, at 2,033,709 to 2,033,987 _RS10120 A4249_RS10125: A4249_RS10125 - phage major tail protein, TP901-1 family, at 2,033,984 to 2,034,394 _RS10125 A4249_RS10130: A4249_RS10130 - DUF3168 domain-containing protein, at 2,034,391 to 2,034,804 _RS10130 Position (kb) 2033 2034Strain fitness (log2 ratio) -1 0 1at 2032.288 kb on + strandat 2032.796 kb on - strand, within A4249_RS10110at 2032.807 kb on + strand, within A4249_RS10110at 2032.808 kb on - strand, within A4249_RS10110at 2032.810 kb on + strand, within A4249_RS10110at 2032.810 kb on + strand, within A4249_RS10110at 2032.810 kb on + strand, within A4249_RS10110at 2032.811 kb on - strand, within A4249_RS10110at 2032.966 kb on + strandat 2032.966 kb on + strandat 2032.967 kb on - strandat 2032.967 kb on - strandat 2032.967 kb on - strandat 2033.209 kb on + strand, within A4249_RS10115at 2033.209 kb on + strand, within A4249_RS10115at 2033.210 kb on - strand, within A4249_RS10115at 2033.389 kb on - strand, within A4249_RS10115at 2034.063 kb on + strand, within A4249_RS10125at 2034.063 kb on + strand, within A4249_RS10125at 2034.064 kb on - strand, within A4249_RS10125at 2034.334 kb on + strand, within A4249_RS10125at 2034.443 kb on + strand, within A4249_RS10130at 2034.443 kb on + strand, within A4249_RS10130at 2034.443 kb on + strand, within A4249_RS10130at 2034.443 kb on + strand, within A4249_RS10130at 2034.443 kb on + strand, within A4249_RS10130at 2034.443 kb on + strand, within A4249_RS10130at 2034.444 kb on - strand, within A4249_RS10130at 2034.444 kb on - strand, within A4249_RS10130at 2034.444 kb on - strand, within A4249_RS10130at 2034.444 kb on - strand, within A4249_RS10130at 2034.444 kb on - strand, within A4249_RS10130

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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2,032,288 + -1.4
2,032,796 - A4249_RS10110 0.75 -0.2
2,032,807 + A4249_RS10110 0.77 +0.8
2,032,808 - A4249_RS10110 0.77 +0.5
2,032,810 + A4249_RS10110 0.77 -1.2
2,032,810 + A4249_RS10110 0.77 -1.0
2,032,810 + A4249_RS10110 0.77 +0.6
2,032,811 - A4249_RS10110 0.77 -1.2
2,032,966 + -0.3
2,032,966 + -0.2
2,032,967 - -0.0
2,032,967 - +1.4
2,032,967 - +0.4
2,033,209 + A4249_RS10115 0.36 -0.1
2,033,209 + A4249_RS10115 0.36 -0.4
2,033,210 - A4249_RS10115 0.36 -0.3
2,033,389 - A4249_RS10115 0.70 -0.4
2,034,063 + A4249_RS10125 0.19 -0.4
2,034,063 + A4249_RS10125 0.19 -0.1
2,034,064 - A4249_RS10125 0.19 +0.3
2,034,334 + A4249_RS10125 0.85 -0.6
2,034,443 + A4249_RS10130 0.13 -0.7
2,034,443 + A4249_RS10130 0.13 -0.3
2,034,443 + A4249_RS10130 0.13 -0.4
2,034,443 + A4249_RS10130 0.13 -0.5
2,034,443 + A4249_RS10130 0.13 -0.0
2,034,443 + A4249_RS10130 0.13 +0.2
2,034,444 - A4249_RS10130 0.13 +0.2
2,034,444 - A4249_RS10130 0.13 +0.1
2,034,444 - A4249_RS10130 0.13 +0.4
2,034,444 - A4249_RS10130 0.13 -0.5
2,034,444 - A4249_RS10130 0.13 +0.2

Or see this region's nucleotide sequence