Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09100

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09095 and A4249_RS09100 are separated by 130 nucleotidesA4249_RS09100 and A4249_RS09105 are separated by 76 nucleotides A4249_RS09095: A4249_RS09095 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 1,819,845 to 1,820,978 _RS09095 A4249_RS09100: A4249_RS09100 - aa3-type cytochrome c oxidase subunit IV, at 1,821,109 to 1,821,381 _RS09100 A4249_RS09105: A4249_RS09105 - M3 family oligoendopeptidase, at 1,821,458 to 1,823,251 _RS09105 Position (kb) 1821 1822Strain fitness (log2 ratio) -3 -2 -1 0 1at 1820.260 kb on + strand, within A4249_RS09095at 1820.260 kb on + strand, within A4249_RS09095at 1820.261 kb on - strand, within A4249_RS09095at 1820.261 kb on - strand, within A4249_RS09095at 1820.261 kb on - strand, within A4249_RS09095at 1820.261 kb on - strand, within A4249_RS09095at 1820.261 kb on - strand, within A4249_RS09095at 1820.261 kb on - strand, within A4249_RS09095at 1820.261 kb on - strand, within A4249_RS09095at 1820.284 kb on + strand, within A4249_RS09095at 1820.522 kb on - strand, within A4249_RS09095at 1820.527 kb on + strand, within A4249_RS09095at 1820.527 kb on + strand, within A4249_RS09095at 1820.527 kb on + strand, within A4249_RS09095at 1820.528 kb on - strand, within A4249_RS09095at 1820.528 kb on - strand, within A4249_RS09095at 1820.528 kb on - strand, within A4249_RS09095at 1820.528 kb on - strand, within A4249_RS09095at 1820.824 kb on + strand, within A4249_RS09095at 1820.825 kb on - strand, within A4249_RS09095at 1820.825 kb on - strand, within A4249_RS09095at 1821.013 kb on + strandat 1821.285 kb on - strand, within A4249_RS09100at 1821.285 kb on - strand, within A4249_RS09100at 1821.309 kb on - strand, within A4249_RS09100at 1821.312 kb on + strand, within A4249_RS09100at 1821.313 kb on - strand, within A4249_RS09100at 1821.313 kb on - strand, within A4249_RS09100at 1821.313 kb on - strand, within A4249_RS09100at 1821.326 kb on + strand, within A4249_RS09100at 1821.326 kb on + strand, within A4249_RS09100at 1821.327 kb on - strand, within A4249_RS09100at 1821.327 kb on - strand, within A4249_RS09100at 1821.413 kb on + strandat 1821.413 kb on + strandat 1821.413 kb on + strandat 1821.413 kb on + strandat 1821.413 kb on + strandat 1821.413 kb on + strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.567 kb on + strandat 1821.567 kb on + strandat 1821.568 kb on - strandat 1821.568 kb on - strandat 1821.679 kb on - strand, within A4249_RS09105at 1821.679 kb on - strand, within A4249_RS09105at 1821.684 kb on + strand, within A4249_RS09105at 1821.684 kb on + strand, within A4249_RS09105at 1821.684 kb on + strand, within A4249_RS09105at 1821.684 kb on + strand, within A4249_RS09105at 1821.684 kb on + strand, within A4249_RS09105at 1821.684 kb on + strand, within A4249_RS09105at 1821.684 kb on + strand, within A4249_RS09105at 1821.685 kb on - strand, within A4249_RS09105at 1821.685 kb on - strand, within A4249_RS09105at 1821.685 kb on - strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.720 kb on + strand, within A4249_RS09105at 1821.720 kb on + strand, within A4249_RS09105at 1821.720 kb on + strand, within A4249_RS09105at 1821.721 kb on - strand, within A4249_RS09105at 1821.721 kb on - strand, within A4249_RS09105at 1821.721 kb on - strand, within A4249_RS09105at 1821.738 kb on + strand, within A4249_RS09105at 1821.739 kb on - strand, within A4249_RS09105at 1822.131 kb on + strand, within A4249_RS09105at 1822.131 kb on + strand, within A4249_RS09105at 1822.131 kb on + strand, within A4249_RS09105at 1822.131 kb on + strand, within A4249_RS09105at 1822.131 kb on + strand, within A4249_RS09105at 1822.132 kb on - strand, within A4249_RS09105at 1822.132 kb on - strand, within A4249_RS09105at 1822.132 kb on - strand, within A4249_RS09105at 1822.132 kb on - strand, within A4249_RS09105at 1822.132 kb on - strand, within A4249_RS09105at 1822.132 kb on - strand, within A4249_RS09105at 1822.164 kb on + strand, within A4249_RS09105at 1822.164 kb on + strand, within A4249_RS09105at 1822.164 kb on + strand, within A4249_RS09105at 1822.164 kb on + strand, within A4249_RS09105at 1822.164 kb on + strand, within A4249_RS09105at 1822.165 kb on - strand, within A4249_RS09105at 1822.165 kb on - strand, within A4249_RS09105at 1822.214 kb on - strand, within A4249_RS09105at 1822.271 kb on + strand, within A4249_RS09105at 1822.271 kb on + strand, within A4249_RS09105at 1822.272 kb on - strand, within A4249_RS09105

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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1,820,260 + A4249_RS09095 0.37 +0.1
1,820,260 + A4249_RS09095 0.37 -1.4
1,820,261 - A4249_RS09095 0.37 -0.8
1,820,261 - A4249_RS09095 0.37 -0.3
1,820,261 - A4249_RS09095 0.37 -0.3
1,820,261 - A4249_RS09095 0.37 -1.0
1,820,261 - A4249_RS09095 0.37 -0.3
1,820,261 - A4249_RS09095 0.37 +0.2
1,820,261 - A4249_RS09095 0.37 -0.4
1,820,284 + A4249_RS09095 0.39 -0.3
1,820,522 - A4249_RS09095 0.60 -0.7
1,820,527 + A4249_RS09095 0.60 +0.8
1,820,527 + A4249_RS09095 0.60 +0.4
1,820,527 + A4249_RS09095 0.60 +0.1
1,820,528 - A4249_RS09095 0.60 -0.2
1,820,528 - A4249_RS09095 0.60 -0.2
1,820,528 - A4249_RS09095 0.60 -0.0
1,820,528 - A4249_RS09095 0.60 -0.5
1,820,824 + A4249_RS09095 0.86 +0.1
1,820,825 - A4249_RS09095 0.86 +0.0
1,820,825 - A4249_RS09095 0.86 +0.2
1,821,013 + -0.3
1,821,285 - A4249_RS09100 0.64 -0.6
1,821,285 - A4249_RS09100 0.64 -0.8
1,821,309 - A4249_RS09100 0.73 +0.0
1,821,312 + A4249_RS09100 0.74 -1.0
1,821,313 - A4249_RS09100 0.75 -1.0
1,821,313 - A4249_RS09100 0.75 +0.5
1,821,313 - A4249_RS09100 0.75 -1.5
1,821,326 + A4249_RS09100 0.79 -0.8
1,821,326 + A4249_RS09100 0.79 +0.6
1,821,327 - A4249_RS09100 0.80 -0.4
1,821,327 - A4249_RS09100 0.80 -0.1
1,821,413 + +0.1
1,821,413 + +0.0
1,821,413 + +0.1
1,821,413 + +0.0
1,821,413 + -0.1
1,821,413 + -3.0
1,821,414 - -0.7
1,821,414 - -0.1
1,821,414 - -0.1
1,821,414 - -0.1
1,821,414 - -0.8
1,821,414 - +0.2
1,821,414 - -0.4
1,821,414 - +1.5
1,821,414 - -0.4
1,821,414 - +0.4
1,821,414 - -0.7
1,821,567 + +0.3
1,821,567 + -0.6
1,821,568 - -1.2
1,821,568 - -0.6
1,821,679 - A4249_RS09105 0.12 +0.5
1,821,679 - A4249_RS09105 0.12 -0.3
1,821,684 + A4249_RS09105 0.13 +1.0
1,821,684 + A4249_RS09105 0.13 +0.1
1,821,684 + A4249_RS09105 0.13 -0.2
1,821,684 + A4249_RS09105 0.13 +0.6
1,821,684 + A4249_RS09105 0.13 -0.3
1,821,684 + A4249_RS09105 0.13 +0.4
1,821,684 + A4249_RS09105 0.13 +0.3
1,821,685 - A4249_RS09105 0.13 -0.6
1,821,685 - A4249_RS09105 0.13 +0.4
1,821,685 - A4249_RS09105 0.13 +0.2
1,821,690 + A4249_RS09105 0.13 -0.9
1,821,690 + A4249_RS09105 0.13 -0.8
1,821,690 + A4249_RS09105 0.13 +0.0
1,821,690 + A4249_RS09105 0.13 +0.3
1,821,690 + A4249_RS09105 0.13 +1.7
1,821,690 + A4249_RS09105 0.13 -0.1
1,821,690 + A4249_RS09105 0.13 -0.5
1,821,690 + A4249_RS09105 0.13 +0.1
1,821,690 + A4249_RS09105 0.13 -2.5
1,821,690 + A4249_RS09105 0.13 +0.8
1,821,690 + A4249_RS09105 0.13 -0.6
1,821,690 + A4249_RS09105 0.13 -0.3
1,821,690 + A4249_RS09105 0.13 -0.7
1,821,690 + A4249_RS09105 0.13 +0.6
1,821,690 + A4249_RS09105 0.13 -0.3
1,821,690 + A4249_RS09105 0.13 -0.1
1,821,690 + A4249_RS09105 0.13 +0.2
1,821,690 + A4249_RS09105 0.13 +0.5
1,821,690 + A4249_RS09105 0.13 +0.9
1,821,690 + A4249_RS09105 0.13 -0.3
1,821,691 - A4249_RS09105 0.13 +0.1
1,821,691 - A4249_RS09105 0.13 +0.6
1,821,691 - A4249_RS09105 0.13 +0.3
1,821,691 - A4249_RS09105 0.13 -0.3
1,821,691 - A4249_RS09105 0.13 -0.7
1,821,691 - A4249_RS09105 0.13 -0.4
1,821,691 - A4249_RS09105 0.13 -0.6
1,821,691 - A4249_RS09105 0.13 +0.0
1,821,691 - A4249_RS09105 0.13 -0.1
1,821,691 - A4249_RS09105 0.13 +0.1
1,821,720 + A4249_RS09105 0.15 -0.3
1,821,720 + A4249_RS09105 0.15 +0.6
1,821,720 + A4249_RS09105 0.15 +0.9
1,821,721 - A4249_RS09105 0.15 +0.0
1,821,721 - A4249_RS09105 0.15 +0.2
1,821,721 - A4249_RS09105 0.15 +0.1
1,821,738 + A4249_RS09105 0.16 -0.1
1,821,739 - A4249_RS09105 0.16 -1.4
1,822,131 + A4249_RS09105 0.38 -0.4
1,822,131 + A4249_RS09105 0.38 +0.2
1,822,131 + A4249_RS09105 0.38 +0.4
1,822,131 + A4249_RS09105 0.38 +0.3
1,822,131 + A4249_RS09105 0.38 -1.3
1,822,132 - A4249_RS09105 0.38 +0.1
1,822,132 - A4249_RS09105 0.38 -0.9
1,822,132 - A4249_RS09105 0.38 -0.4
1,822,132 - A4249_RS09105 0.38 +0.3
1,822,132 - A4249_RS09105 0.38 +0.7
1,822,132 - A4249_RS09105 0.38 -0.5
1,822,164 + A4249_RS09105 0.39 +0.6
1,822,164 + A4249_RS09105 0.39 +0.2
1,822,164 + A4249_RS09105 0.39 +0.0
1,822,164 + A4249_RS09105 0.39 +0.6
1,822,164 + A4249_RS09105 0.39 +0.4
1,822,165 - A4249_RS09105 0.39 +0.1
1,822,165 - A4249_RS09105 0.39 +0.5
1,822,214 - A4249_RS09105 0.42 +0.0
1,822,271 + A4249_RS09105 0.45 -1.5
1,822,271 + A4249_RS09105 0.45 +0.5
1,822,272 - A4249_RS09105 0.45 -0.3

Or see this region's nucleotide sequence