Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08800

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08790 and A4249_RS17055 are separated by 0 nucleotidesA4249_RS17055 and A4249_RS08795 are separated by 99 nucleotidesA4249_RS08795 and A4249_RS08800 are separated by 3 nucleotidesA4249_RS08800 and A4249_RS08805 are separated by 43 nucleotides A4249_RS08790: A4249_RS08790 - chorismate synthase, at 1,762,359 to 1,763,444 _RS08790 A4249_RS17055: A4249_RS17055 - hypothetical protein, at 1,763,445 to 1,763,570 _RS17055 A4249_RS08795: A4249_RS08795 - glyoxalase, at 1,763,670 to 1,764,011 _RS08795 A4249_RS08800: A4249_RS08800 - hypothetical protein, at 1,764,015 to 1,764,797 _RS08800 A4249_RS08805: A4249_RS08805 - HAMP domain-containing sensor histidine kinase, at 1,764,841 to 1,766,532 _RS08805 Position (kb) 1764 1765Strain fitness (log2 ratio) -2 -1 0 1 2at 1763.617 kb on + strandat 1763.694 kb on + strandat 1763.694 kb on + strandat 1763.695 kb on - strandat 1763.695 kb on - strandat 1763.695 kb on - strandat 1763.739 kb on + strand, within A4249_RS08795at 1763.739 kb on + strand, within A4249_RS08795at 1763.739 kb on + strand, within A4249_RS08795at 1763.739 kb on + strand, within A4249_RS08795at 1763.740 kb on - strand, within A4249_RS08795at 1763.784 kb on + strand, within A4249_RS08795at 1763.784 kb on + strand, within A4249_RS08795at 1763.784 kb on + strand, within A4249_RS08795at 1763.784 kb on + strand, within A4249_RS08795at 1763.785 kb on - strand, within A4249_RS08795at 1763.785 kb on - strand, within A4249_RS08795at 1763.785 kb on - strand, within A4249_RS08795at 1763.785 kb on - strand, within A4249_RS08795at 1763.785 kb on - strand, within A4249_RS08795at 1763.865 kb on + strand, within A4249_RS08795at 1763.865 kb on + strand, within A4249_RS08795at 1763.866 kb on - strand, within A4249_RS08795at 1763.866 kb on - strand, within A4249_RS08795at 1763.866 kb on - strand, within A4249_RS08795at 1763.866 kb on - strand, within A4249_RS08795at 1763.934 kb on + strand, within A4249_RS08795at 1763.934 kb on + strand, within A4249_RS08795at 1763.935 kb on - strand, within A4249_RS08795at 1763.935 kb on - strand, within A4249_RS08795at 1764.016 kb on + strandat 1764.017 kb on - strandat 1764.017 kb on - strandat 1764.017 kb on - strandat 1764.017 kb on - strandat 1764.205 kb on + strand, within A4249_RS08800at 1764.205 kb on + strand, within A4249_RS08800at 1764.205 kb on + strand, within A4249_RS08800at 1764.205 kb on + strand, within A4249_RS08800at 1764.206 kb on - strand, within A4249_RS08800at 1764.206 kb on - strand, within A4249_RS08800at 1764.206 kb on - strand, within A4249_RS08800at 1764.206 kb on - strand, within A4249_RS08800at 1764.206 kb on - strand, within A4249_RS08800at 1764.206 kb on - strand, within A4249_RS08800at 1764.206 kb on - strand, within A4249_RS08800at 1764.235 kb on + strand, within A4249_RS08800at 1764.235 kb on + strand, within A4249_RS08800at 1764.235 kb on + strand, within A4249_RS08800at 1764.236 kb on - strand, within A4249_RS08800at 1764.274 kb on + strand, within A4249_RS08800at 1764.274 kb on + strand, within A4249_RS08800at 1764.275 kb on - strand, within A4249_RS08800at 1764.275 kb on - strand, within A4249_RS08800at 1764.275 kb on - strand, within A4249_RS08800at 1764.275 kb on - strand, within A4249_RS08800at 1764.275 kb on - strand, within A4249_RS08800at 1764.275 kb on - strand, within A4249_RS08800at 1765.118 kb on + strand, within A4249_RS08805at 1765.118 kb on + strand, within A4249_RS08805at 1765.119 kb on - strand, within A4249_RS08805at 1765.119 kb on - strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.616 kb on + strand, within A4249_RS08805at 1765.616 kb on + strand, within A4249_RS08805at 1765.616 kb on + strand, within A4249_RS08805at 1765.616 kb on + strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.676 kb on + strand, within A4249_RS08805

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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1,763,617 + +0.8
1,763,694 + -0.2
1,763,694 + +0.5
1,763,695 - -0.3
1,763,695 - +0.2
1,763,695 - -0.0
1,763,739 + A4249_RS08795 0.20 -0.4
1,763,739 + A4249_RS08795 0.20 -0.5
1,763,739 + A4249_RS08795 0.20 -0.2
1,763,739 + A4249_RS08795 0.20 +1.3
1,763,740 - A4249_RS08795 0.20 -0.3
1,763,784 + A4249_RS08795 0.33 -0.3
1,763,784 + A4249_RS08795 0.33 -0.2
1,763,784 + A4249_RS08795 0.33 +0.5
1,763,784 + A4249_RS08795 0.33 +0.2
1,763,785 - A4249_RS08795 0.34 +1.8
1,763,785 - A4249_RS08795 0.34 +0.2
1,763,785 - A4249_RS08795 0.34 +1.0
1,763,785 - A4249_RS08795 0.34 -1.0
1,763,785 - A4249_RS08795 0.34 +0.0
1,763,865 + A4249_RS08795 0.57 +0.8
1,763,865 + A4249_RS08795 0.57 -0.1
1,763,866 - A4249_RS08795 0.57 -0.9
1,763,866 - A4249_RS08795 0.57 +0.9
1,763,866 - A4249_RS08795 0.57 +0.8
1,763,866 - A4249_RS08795 0.57 -0.3
1,763,934 + A4249_RS08795 0.77 +0.2
1,763,934 + A4249_RS08795 0.77 +0.4
1,763,935 - A4249_RS08795 0.77 +0.7
1,763,935 - A4249_RS08795 0.77 +0.5
1,764,016 + -0.3
1,764,017 - -0.8
1,764,017 - -0.1
1,764,017 - +0.4
1,764,017 - +0.9
1,764,205 + A4249_RS08800 0.24 -0.4
1,764,205 + A4249_RS08800 0.24 -0.5
1,764,205 + A4249_RS08800 0.24 -0.1
1,764,205 + A4249_RS08800 0.24 -0.4
1,764,206 - A4249_RS08800 0.24 -0.3
1,764,206 - A4249_RS08800 0.24 +0.2
1,764,206 - A4249_RS08800 0.24 +0.3
1,764,206 - A4249_RS08800 0.24 -0.8
1,764,206 - A4249_RS08800 0.24 -0.5
1,764,206 - A4249_RS08800 0.24 -0.3
1,764,206 - A4249_RS08800 0.24 -0.6
1,764,235 + A4249_RS08800 0.28 -1.0
1,764,235 + A4249_RS08800 0.28 -0.5
1,764,235 + A4249_RS08800 0.28 -0.4
1,764,236 - A4249_RS08800 0.28 -0.4
1,764,274 + A4249_RS08800 0.33 +0.1
1,764,274 + A4249_RS08800 0.33 -0.7
1,764,275 - A4249_RS08800 0.33 -0.0
1,764,275 - A4249_RS08800 0.33 -0.7
1,764,275 - A4249_RS08800 0.33 -0.3
1,764,275 - A4249_RS08800 0.33 +0.4
1,764,275 - A4249_RS08800 0.33 -0.2
1,764,275 - A4249_RS08800 0.33 -0.6
1,765,118 + A4249_RS08805 0.16 +0.3
1,765,118 + A4249_RS08805 0.16 -0.1
1,765,119 - A4249_RS08805 0.16 +0.5
1,765,119 - A4249_RS08805 0.16 +0.9
1,765,614 + A4249_RS08805 0.46 -0.3
1,765,614 + A4249_RS08805 0.46 -0.5
1,765,614 + A4249_RS08805 0.46 -0.4
1,765,614 + A4249_RS08805 0.46 -0.2
1,765,614 + A4249_RS08805 0.46 -0.6
1,765,614 + A4249_RS08805 0.46 +0.3
1,765,614 + A4249_RS08805 0.46 -2.1
1,765,614 + A4249_RS08805 0.46 -0.9
1,765,614 + A4249_RS08805 0.46 -0.2
1,765,615 - A4249_RS08805 0.46 +0.3
1,765,615 - A4249_RS08805 0.46 -0.2
1,765,615 - A4249_RS08805 0.46 +0.2
1,765,615 - A4249_RS08805 0.46 +0.2
1,765,615 - A4249_RS08805 0.46 -0.3
1,765,615 - A4249_RS08805 0.46 +0.4
1,765,615 - A4249_RS08805 0.46 +0.0
1,765,615 - A4249_RS08805 0.46 -1.4
1,765,615 - A4249_RS08805 0.46 +0.5
1,765,615 - A4249_RS08805 0.46 -1.3
1,765,615 - A4249_RS08805 0.46 +0.3
1,765,615 - A4249_RS08805 0.46 -1.0
1,765,616 + A4249_RS08805 0.46 -1.2
1,765,616 + A4249_RS08805 0.46 -0.2
1,765,616 + A4249_RS08805 0.46 -0.9
1,765,616 + A4249_RS08805 0.46 -0.4
1,765,617 - A4249_RS08805 0.46 -0.4
1,765,617 - A4249_RS08805 0.46 +0.4
1,765,617 - A4249_RS08805 0.46 -0.2
1,765,617 - A4249_RS08805 0.46 -0.7
1,765,617 - A4249_RS08805 0.46 -0.7
1,765,617 - A4249_RS08805 0.46 +0.4
1,765,617 - A4249_RS08805 0.46 +0.1
1,765,617 - A4249_RS08805 0.46 -0.9
1,765,617 - A4249_RS08805 0.46 +0.1
1,765,617 - A4249_RS08805 0.46 -0.1
1,765,676 + A4249_RS08805 0.49 -0.1

Or see this region's nucleotide sequence