Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS06775 and A4249_RS06780 overlap by 11 nucleotides A4249_RS06780 and A4249_RS06785 overlap by 4 nucleotides A4249_RS06785 and A4249_RS06790 are separated by 1 nucleotides
A4249_RS06775: A4249_RS06775 - guanylate kinase, at 1,380,986 to 1,381,627
_RS06775
A4249_RS06780: A4249_RS06780 - YicC family protein, at 1,381,617 to 1,382,501
_RS06780
A4249_RS06785: A4249_RS06785 - endolytic transglycosylase MltG, at 1,382,498 to 1,383,658
_RS06785
A4249_RS06790: A4249_RS06790 - beta-ketoacyl-ACP synthase II, at 1,383,660 to 1,384,931
_RS06790
Position (kb)
1382
1383
1384 Strain fitness (log2 ratio)
-1
0
1 at 1382.234 kb on - strand, within A4249_RS06780 at 1382.694 kb on + strand, within A4249_RS06785 at 1382.694 kb on + strand, within A4249_RS06785 at 1382.832 kb on + strand, within A4249_RS06785 at 1383.162 kb on + strand, within A4249_RS06785 at 1383.162 kb on + strand, within A4249_RS06785 at 1383.162 kb on + strand, within A4249_RS06785 at 1383.163 kb on - strand, within A4249_RS06785 at 1383.163 kb on - strand, within A4249_RS06785 at 1383.163 kb on - strand, within A4249_RS06785 at 1383.354 kb on + strand, within A4249_RS06785 at 1383.531 kb on + strand, within A4249_RS06785 at 1383.534 kb on + strand, within A4249_RS06785 at 1383.535 kb on - strand, within A4249_RS06785
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 1,382,234 - A4249_RS06780 0.70 -0.3 1,382,694 + A4249_RS06785 0.17 -0.4 1,382,694 + A4249_RS06785 0.17 +0.8 1,382,832 + A4249_RS06785 0.29 -0.7 1,383,162 + A4249_RS06785 0.57 +1.6 1,383,162 + A4249_RS06785 0.57 -0.0 1,383,162 + A4249_RS06785 0.57 -0.2 1,383,163 - A4249_RS06785 0.57 -0.5 1,383,163 - A4249_RS06785 0.57 -0.2 1,383,163 - A4249_RS06785 0.57 -0.1 1,383,354 + A4249_RS06785 0.74 -0.6 1,383,531 + A4249_RS06785 0.89 +1.0 1,383,534 + A4249_RS06785 0.89 -0.4 1,383,535 - A4249_RS06785 0.89 -0.4
Or see this region's nucleotide sequence