Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04050 and A4249_RS04055 overlap by 29 nucleotides A4249_RS04055 and A4249_RS04060 overlap by 11 nucleotides A4249_RS04060 and A4249_RS04065 are separated by 99 nucleotides
A4249_RS04050: A4249_RS04050 - LysR substrate-binding domain-containing protein, at 839,309 to 840,226
_RS04050
A4249_RS04055: A4249_RS04055 - ABC transporter permease subunit, at 840,198 to 841,055
_RS04055
A4249_RS04060: A4249_RS04060 - ABC transporter ATP-binding protein, at 841,045 to 841,956
_RS04060
A4249_RS04065: A4249_RS04065 - ectonucleotide pyrophosphatase/phosphodiesterase, at 842,056 to 843,300
_RS04065
Position (kb) 841
842 Strain fitness (log2 ratio) -2
-1
0
1
2 at 840.051 kb on + strand, within A4249_RS04050 at 840.051 kb on + strand, within A4249_RS04050 at 840.051 kb on + strand, within A4249_RS04050 at 840.052 kb on - strand, within A4249_RS04050 at 840.052 kb on - strand, within A4249_RS04050 at 840.052 kb on - strand, within A4249_RS04050 at 840.052 kb on - strand, within A4249_RS04050 at 840.185 kb on - strand at 840.199 kb on + strand at 840.199 kb on + strand at 840.199 kb on + strand at 840.200 kb on - strand at 840.292 kb on - strand, within A4249_RS04055 at 840.306 kb on + strand, within A4249_RS04055 at 840.306 kb on + strand, within A4249_RS04055 at 840.548 kb on + strand, within A4249_RS04055 at 840.548 kb on + strand, within A4249_RS04055 at 840.548 kb on + strand, within A4249_RS04055 at 840.548 kb on + strand, within A4249_RS04055 at 840.548 kb on + strand, within A4249_RS04055 at 840.548 kb on + strand, within A4249_RS04055 at 840.548 kb on + strand, within A4249_RS04055 at 840.548 kb on + strand, within A4249_RS04055 at 840.549 kb on - strand, within A4249_RS04055 at 840.549 kb on - strand, within A4249_RS04055 at 840.549 kb on - strand, within A4249_RS04055 at 840.549 kb on - strand, within A4249_RS04055 at 840.549 kb on - strand, within A4249_RS04055 at 840.778 kb on + strand, within A4249_RS04055 at 840.778 kb on + strand, within A4249_RS04055 at 840.778 kb on + strand, within A4249_RS04055 at 840.778 kb on + strand, within A4249_RS04055 at 840.778 kb on + strand, within A4249_RS04055 at 840.960 kb on + strand, within A4249_RS04055 at 840.960 kb on + strand, within A4249_RS04055 at 840.960 kb on + strand, within A4249_RS04055 at 840.960 kb on + strand, within A4249_RS04055 at 840.960 kb on + strand, within A4249_RS04055 at 840.960 kb on + strand, within A4249_RS04055 at 840.960 kb on + strand, within A4249_RS04055 at 840.960 kb on + strand, within A4249_RS04055 at 840.960 kb on + strand, within A4249_RS04055 at 840.960 kb on + strand, within A4249_RS04055 at 840.961 kb on - strand, within A4249_RS04055 at 840.961 kb on - strand, within A4249_RS04055 at 840.961 kb on - strand, within A4249_RS04055 at 840.961 kb on - strand, within A4249_RS04055 at 840.961 kb on - strand, within A4249_RS04055 at 840.961 kb on - strand, within A4249_RS04055 at 841.018 kb on - strand at 841.018 kb on - strand at 841.024 kb on + strand at 841.024 kb on + strand at 841.025 kb on - strand at 841.025 kb on - strand at 841.025 kb on - strand at 841.025 kb on - strand at 841.050 kb on + strand at 841.050 kb on + strand at 841.050 kb on + strand at 841.050 kb on + strand at 841.050 kb on + strand at 841.051 kb on - strand at 841.051 kb on - strand at 841.051 kb on - strand at 841.719 kb on + strand, within A4249_RS04060 at 841.859 kb on + strand, within A4249_RS04060 at 841.860 kb on - strand, within A4249_RS04060 at 841.860 kb on - strand, within A4249_RS04060 at 841.906 kb on + strand at 841.907 kb on - strand at 841.907 kb on - strand at 841.916 kb on + strand at 841.916 kb on + strand at 841.916 kb on + strand at 841.916 kb on + strand at 841.916 kb on + strand at 841.917 kb on - strand at 841.917 kb on - strand at 841.917 kb on - strand at 841.917 kb on - strand at 842.015 kb on + strand at 842.016 kb on - strand at 842.016 kb on - strand at 842.016 kb on - strand at 842.016 kb on - strand at 842.021 kb on + strand at 842.022 kb on - strand at 842.022 kb on - strand at 842.036 kb on + strand at 842.049 kb on + strand at 842.049 kb on + strand at 842.049 kb on + strand at 842.050 kb on - strand at 842.050 kb on - strand at 842.050 kb on - strand at 842.139 kb on + strand at 842.139 kb on + strand at 842.139 kb on + strand at 842.139 kb on + strand at 842.139 kb on + strand at 842.139 kb on + strand at 842.139 kb on + strand at 842.139 kb on + strand at 842.139 kb on + strand at 842.139 kb on + strand at 842.139 kb on + strand at 842.139 kb on + strand at 842.139 kb on + strand at 842.139 kb on + strand at 842.139 kb on + strand at 842.139 kb on + strand at 842.139 kb on + strand at 842.140 kb on - strand at 842.140 kb on - strand at 842.140 kb on - strand at 842.140 kb on - strand at 842.140 kb on - strand at 842.140 kb on - strand at 842.140 kb on - strand at 842.140 kb on - strand at 842.140 kb on - strand at 842.140 kb on - strand at 842.140 kb on - strand at 842.224 kb on + strand, within A4249_RS04065 at 842.224 kb on + strand, within A4249_RS04065 at 842.224 kb on + strand, within A4249_RS04065 at 842.224 kb on + strand, within A4249_RS04065 at 842.224 kb on + strand, within A4249_RS04065 at 842.224 kb on + strand, within A4249_RS04065 at 842.224 kb on + strand, within A4249_RS04065 at 842.224 kb on + strand, within A4249_RS04065 at 842.224 kb on + strand, within A4249_RS04065 at 842.225 kb on - strand, within A4249_RS04065 at 842.225 kb on - strand, within A4249_RS04065 at 842.225 kb on - strand, within A4249_RS04065 at 842.225 kb on - strand, within A4249_RS04065 at 842.225 kb on - strand, within A4249_RS04065 at 842.326 kb on + strand, within A4249_RS04065 at 842.326 kb on + strand, within A4249_RS04065 at 842.326 kb on + strand, within A4249_RS04065 at 842.327 kb on - strand, within A4249_RS04065 at 842.327 kb on - strand, within A4249_RS04065 at 842.327 kb on - strand, within A4249_RS04065 at 842.327 kb on - strand, within A4249_RS04065 at 842.328 kb on + strand, within A4249_RS04065 at 842.328 kb on + strand, within A4249_RS04065 at 842.328 kb on + strand, within A4249_RS04065 at 842.328 kb on + strand, within A4249_RS04065 at 842.328 kb on + strand, within A4249_RS04065 at 842.328 kb on + strand, within A4249_RS04065 at 842.328 kb on + strand, within A4249_RS04065 at 842.328 kb on + strand, within A4249_RS04065 at 842.328 kb on + strand, within A4249_RS04065 at 842.328 kb on + strand, within A4249_RS04065 at 842.328 kb on + strand, within A4249_RS04065 at 842.328 kb on + strand, within A4249_RS04065 at 842.328 kb on + strand, within A4249_RS04065 at 842.328 kb on + strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.329 kb on - strand, within A4249_RS04065 at 842.334 kb on - strand, within A4249_RS04065 at 842.647 kb on + strand, within A4249_RS04065 at 842.647 kb on + strand, within A4249_RS04065 at 842.648 kb on - strand, within A4249_RS04065 at 842.648 kb on - strand, within A4249_RS04065 at 842.773 kb on + strand, within A4249_RS04065 at 842.773 kb on + strand, within A4249_RS04065 at 842.773 kb on + strand, within A4249_RS04065 at 842.773 kb on + strand, within A4249_RS04065 at 842.773 kb on + strand, within A4249_RS04065 at 842.773 kb on + strand, within A4249_RS04065 at 842.773 kb on + strand, within A4249_RS04065 at 842.774 kb on - strand, within A4249_RS04065 at 842.774 kb on - strand, within A4249_RS04065 at 842.774 kb on - strand, within A4249_RS04065
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 840,051 + A4249_RS04050 0.81 -0.0 840,051 + A4249_RS04050 0.81 -0.3 840,051 + A4249_RS04050 0.81 -0.1 840,052 - A4249_RS04050 0.81 +0.2 840,052 - A4249_RS04050 0.81 -0.1 840,052 - A4249_RS04050 0.81 -0.4 840,052 - A4249_RS04050 0.81 -0.4 840,185 - +0.0 840,199 + -0.1 840,199 + +0.5 840,199 + -0.1 840,200 - +0.2 840,292 - A4249_RS04055 0.11 +0.3 840,306 + A4249_RS04055 0.13 +0.4 840,306 + A4249_RS04055 0.13 -2.0 840,548 + A4249_RS04055 0.41 +0.0 840,548 + A4249_RS04055 0.41 -2.3 840,548 + A4249_RS04055 0.41 +1.3 840,548 + A4249_RS04055 0.41 +0.0 840,548 + A4249_RS04055 0.41 -0.7 840,548 + A4249_RS04055 0.41 -0.4 840,548 + A4249_RS04055 0.41 +0.9 840,548 + A4249_RS04055 0.41 +0.7 840,549 - A4249_RS04055 0.41 +1.4 840,549 - A4249_RS04055 0.41 +0.9 840,549 - A4249_RS04055 0.41 -0.0 840,549 - A4249_RS04055 0.41 +1.2 840,549 - A4249_RS04055 0.41 -0.3 840,778 + A4249_RS04055 0.68 +0.2 840,778 + A4249_RS04055 0.68 +0.3 840,778 + A4249_RS04055 0.68 -0.6 840,778 + A4249_RS04055 0.68 +0.0 840,778 + A4249_RS04055 0.68 +0.3 840,960 + A4249_RS04055 0.89 -1.4 840,960 + A4249_RS04055 0.89 +0.1 840,960 + A4249_RS04055 0.89 +0.4 840,960 + A4249_RS04055 0.89 +0.0 840,960 + A4249_RS04055 0.89 -0.5 840,960 + A4249_RS04055 0.89 -0.9 840,960 + A4249_RS04055 0.89 -0.3 840,960 + A4249_RS04055 0.89 -0.7 840,960 + A4249_RS04055 0.89 +1.1 840,960 + A4249_RS04055 0.89 +0.3 840,961 - A4249_RS04055 0.89 +0.5 840,961 - A4249_RS04055 0.89 +0.1 840,961 - A4249_RS04055 0.89 +1.0 840,961 - A4249_RS04055 0.89 +0.1 840,961 - A4249_RS04055 0.89 -0.0 840,961 - A4249_RS04055 0.89 -0.0 841,018 - -1.3 841,018 - -0.0 841,024 + +0.2 841,024 + +1.2 841,025 - +0.2 841,025 - +0.5 841,025 - -0.6 841,025 - -0.8 841,050 + -0.9 841,050 + -0.3 841,050 + -0.0 841,050 + +0.0 841,050 + -1.7 841,051 - +0.2 841,051 - -0.2 841,051 - -0.7 841,719 + A4249_RS04060 0.74 -0.4 841,859 + A4249_RS04060 0.89 +0.4 841,860 - A4249_RS04060 0.89 -0.9 841,860 - A4249_RS04060 0.89 -0.0 841,906 + -0.4 841,907 - -0.5 841,907 - +1.1 841,916 + -0.3 841,916 + +0.4 841,916 + +0.5 841,916 + +0.4 841,916 + +0.4 841,917 - -0.0 841,917 - -1.7 841,917 - +0.2 841,917 - +0.0 842,015 + +0.3 842,016 - -1.1 842,016 - +0.6 842,016 - -0.4 842,016 - -0.0 842,021 + +0.3 842,022 - +0.6 842,022 - +0.0 842,036 + +0.6 842,049 + -0.4 842,049 + -0.5 842,049 + -0.2 842,050 - -0.3 842,050 - +0.7 842,050 - -0.8 842,139 + +0.3 842,139 + +0.6 842,139 + +0.3 842,139 + +0.6 842,139 + +0.3 842,139 + +0.7 842,139 + -0.4 842,139 + +0.4 842,139 + -0.3 842,139 + +0.2 842,139 + -0.6 842,139 + +0.1 842,139 + -0.9 842,139 + +0.5 842,139 + -0.3 842,139 + +0.5 842,139 + +0.0 842,140 - +0.9 842,140 - -0.3 842,140 - -0.3 842,140 - -0.1 842,140 - +0.3 842,140 - +0.1 842,140 - -0.6 842,140 - +0.2 842,140 - +0.8 842,140 - -0.4 842,140 - -1.7 842,224 + A4249_RS04065 0.13 -0.1 842,224 + A4249_RS04065 0.13 -0.5 842,224 + A4249_RS04065 0.13 +0.1 842,224 + A4249_RS04065 0.13 +0.3 842,224 + A4249_RS04065 0.13 +0.4 842,224 + A4249_RS04065 0.13 -0.5 842,224 + A4249_RS04065 0.13 +0.3 842,224 + A4249_RS04065 0.13 +0.6 842,224 + A4249_RS04065 0.13 -1.1 842,225 - A4249_RS04065 0.14 +0.5 842,225 - A4249_RS04065 0.14 -0.3 842,225 - A4249_RS04065 0.14 +0.6 842,225 - A4249_RS04065 0.14 -0.1 842,225 - A4249_RS04065 0.14 -0.3 842,326 + A4249_RS04065 0.22 +1.4 842,326 + A4249_RS04065 0.22 -0.3 842,326 + A4249_RS04065 0.22 -0.2 842,327 - A4249_RS04065 0.22 -0.1 842,327 - A4249_RS04065 0.22 +0.1 842,327 - A4249_RS04065 0.22 -0.6 842,327 - A4249_RS04065 0.22 -0.4 842,328 + A4249_RS04065 0.22 -0.3 842,328 + A4249_RS04065 0.22 +0.5 842,328 + A4249_RS04065 0.22 -1.3 842,328 + A4249_RS04065 0.22 -0.9 842,328 + A4249_RS04065 0.22 +0.0 842,328 + A4249_RS04065 0.22 -0.2 842,328 + A4249_RS04065 0.22 -0.4 842,328 + A4249_RS04065 0.22 +0.1 842,328 + A4249_RS04065 0.22 -0.5 842,328 + A4249_RS04065 0.22 +0.6 842,328 + A4249_RS04065 0.22 +0.0 842,328 + A4249_RS04065 0.22 -0.6 842,328 + A4249_RS04065 0.22 +0.2 842,328 + A4249_RS04065 0.22 -0.4 842,329 - A4249_RS04065 0.22 +1.3 842,329 - A4249_RS04065 0.22 -0.6 842,329 - A4249_RS04065 0.22 +0.0 842,329 - A4249_RS04065 0.22 +0.2 842,329 - A4249_RS04065 0.22 +0.3 842,329 - A4249_RS04065 0.22 +0.5 842,329 - A4249_RS04065 0.22 +1.0 842,329 - A4249_RS04065 0.22 +0.5 842,329 - A4249_RS04065 0.22 +0.0 842,329 - A4249_RS04065 0.22 +0.1 842,329 - A4249_RS04065 0.22 -0.4 842,329 - A4249_RS04065 0.22 +0.3 842,329 - A4249_RS04065 0.22 -0.5 842,329 - A4249_RS04065 0.22 +1.3 842,329 - A4249_RS04065 0.22 -0.4 842,329 - A4249_RS04065 0.22 -0.2 842,329 - A4249_RS04065 0.22 +0.2 842,329 - A4249_RS04065 0.22 +0.2 842,334 - A4249_RS04065 0.22 -0.5 842,647 + A4249_RS04065 0.47 +0.2 842,647 + A4249_RS04065 0.47 +0.0 842,648 - A4249_RS04065 0.48 +0.3 842,648 - A4249_RS04065 0.48 -0.2 842,773 + A4249_RS04065 0.58 -0.5 842,773 + A4249_RS04065 0.58 -0.8 842,773 + A4249_RS04065 0.58 -0.5 842,773 + A4249_RS04065 0.58 -0.3 842,773 + A4249_RS04065 0.58 +0.0 842,773 + A4249_RS04065 0.58 +0.2 842,773 + A4249_RS04065 0.58 +1.9 842,774 - A4249_RS04065 0.58 -0.0 842,774 - A4249_RS04065 0.58 -0.0 842,774 - A4249_RS04065 0.58 -0.3
Or see this region's nucleotide sequence