Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS03455

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS03435 and A4249_RS03440 are separated by 9 nucleotidesA4249_RS03440 and A4249_RS03445 overlap by 4 nucleotidesA4249_RS03445 and A4249_RS03450 overlap by 8 nucleotidesA4249_RS03450 and A4249_RS03455 are separated by 3 nucleotidesA4249_RS03455 and A4249_RS03460 overlap by 4 nucleotides A4249_RS03435: A4249_RS03435 - plasmid stabilization protein, at 719,595 to 719,900 _RS03435 A4249_RS03440: A4249_RS03440 - hypothetical protein, at 719,910 to 720,122 _RS03440 A4249_RS03445: A4249_RS03445 - hypothetical protein, at 720,119 to 720,325 _RS03445 A4249_RS03450: A4249_RS03450 - ferritin-like domain-containing protein, at 720,318 to 720,818 _RS03450 A4249_RS03455: A4249_RS03455 - cysteine hydrolase, at 720,822 to 721,424 _RS03455 A4249_RS03460: A4249_RS03460 - glycoside hydrolase family 65 protein, at 721,421 to 723,493 _RS03460 Position (kb) 720 721 722Strain fitness (log2 ratio) -3 -2 -1 0 1at 719.919 kb on + strandat 719.919 kb on + strandat 719.919 kb on + strandat 719.919 kb on + strandat 719.919 kb on + strandat 719.920 kb on - strandat 719.920 kb on - strandat 719.920 kb on - strandat 720.034 kb on + strand, within A4249_RS03440at 720.034 kb on + strand, within A4249_RS03440at 720.034 kb on + strand, within A4249_RS03440at 720.035 kb on - strand, within A4249_RS03440at 720.035 kb on - strand, within A4249_RS03440at 720.035 kb on - strand, within A4249_RS03440at 720.063 kb on + strand, within A4249_RS03440at 720.348 kb on + strandat 720.348 kb on + strandat 720.348 kb on + strandat 720.348 kb on + strandat 720.348 kb on + strandat 720.348 kb on + strandat 720.349 kb on - strandat 720.349 kb on - strandat 720.349 kb on - strandat 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.369 kb on + strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.370 kb on - strand, within A4249_RS03450at 720.372 kb on + strand, within A4249_RS03450at 720.588 kb on + strand, within A4249_RS03450at 720.588 kb on + strand, within A4249_RS03450at 720.588 kb on + strand, within A4249_RS03450at 720.589 kb on - strand, within A4249_RS03450at 720.589 kb on - strand, within A4249_RS03450at 720.648 kb on + strand, within A4249_RS03450at 720.648 kb on + strand, within A4249_RS03450at 720.648 kb on + strand, within A4249_RS03450at 720.648 kb on + strand, within A4249_RS03450at 720.648 kb on + strand, within A4249_RS03450at 720.649 kb on - strand, within A4249_RS03450at 720.649 kb on - strand, within A4249_RS03450at 720.649 kb on - strand, within A4249_RS03450at 720.649 kb on - strand, within A4249_RS03450at 720.649 kb on - strand, within A4249_RS03450at 720.649 kb on - strand, within A4249_RS03450at 720.649 kb on - strand, within A4249_RS03450at 720.649 kb on - strand, within A4249_RS03450at 720.664 kb on - strand, within A4249_RS03450at 720.664 kb on - strand, within A4249_RS03450at 720.699 kb on + strand, within A4249_RS03450at 720.934 kb on + strand, within A4249_RS03455at 720.934 kb on + strand, within A4249_RS03455at 721.041 kb on + strand, within A4249_RS03455at 721.155 kb on + strand, within A4249_RS03455at 721.155 kb on + strand, within A4249_RS03455at 721.156 kb on - strand, within A4249_RS03455at 721.284 kb on + strand, within A4249_RS03455at 721.312 kb on + strand, within A4249_RS03455at 721.312 kb on + strand, within A4249_RS03455at 721.312 kb on + strand, within A4249_RS03455at 721.356 kb on + strand, within A4249_RS03455at 721.356 kb on + strand, within A4249_RS03455at 721.357 kb on - strand, within A4249_RS03455at 721.422 kb on + strandat 721.422 kb on + strandat 721.422 kb on + strandat 721.423 kb on - strandat 721.423 kb on - strandat 721.423 kb on - strandat 721.671 kb on + strand, within A4249_RS03460at 721.705 kb on - strand, within A4249_RS03460at 721.777 kb on - strand, within A4249_RS03460at 721.777 kb on - strand, within A4249_RS03460at 721.777 kb on - strand, within A4249_RS03460at 721.806 kb on + strand, within A4249_RS03460at 721.827 kb on + strand, within A4249_RS03460at 721.827 kb on + strand, within A4249_RS03460at 721.828 kb on - strand, within A4249_RS03460at 721.828 kb on - strand, within A4249_RS03460at 721.875 kb on + strand, within A4249_RS03460at 721.876 kb on - strand, within A4249_RS03460at 721.876 kb on - strand, within A4249_RS03460at 722.251 kb on - strand, within A4249_RS03460

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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719,919 + -1.3
719,919 + -0.8
719,919 + +0.5
719,919 + -0.4
719,919 + -0.7
719,920 - -0.9
719,920 - +0.1
719,920 - -0.1
720,034 + A4249_RS03440 0.58 +0.7
720,034 + A4249_RS03440 0.58 -1.4
720,034 + A4249_RS03440 0.58 -0.1
720,035 - A4249_RS03440 0.59 +0.9
720,035 - A4249_RS03440 0.59 +0.2
720,035 - A4249_RS03440 0.59 -0.4
720,063 + A4249_RS03440 0.72 +0.5
720,348 + +0.4
720,348 + -0.4
720,348 + +0.0
720,348 + +0.2
720,348 + -0.8
720,348 + +0.5
720,349 - -2.8
720,349 - -0.6
720,349 - +0.4
720,369 + A4249_RS03450 0.10 -0.1
720,369 + A4249_RS03450 0.10 -0.1
720,369 + A4249_RS03450 0.10 +0.3
720,369 + A4249_RS03450 0.10 +0.1
720,369 + A4249_RS03450 0.10 -0.4
720,369 + A4249_RS03450 0.10 +0.7
720,369 + A4249_RS03450 0.10 -0.3
720,369 + A4249_RS03450 0.10 +0.0
720,369 + A4249_RS03450 0.10 +0.1
720,369 + A4249_RS03450 0.10 +0.1
720,369 + A4249_RS03450 0.10 -0.3
720,369 + A4249_RS03450 0.10 -0.2
720,369 + A4249_RS03450 0.10 +0.2
720,369 + A4249_RS03450 0.10 -0.0
720,369 + A4249_RS03450 0.10 +0.3
720,369 + A4249_RS03450 0.10 +0.1
720,369 + A4249_RS03450 0.10 -0.7
720,369 + A4249_RS03450 0.10 +0.5
720,369 + A4249_RS03450 0.10 +0.1
720,369 + A4249_RS03450 0.10 -0.0
720,369 + A4249_RS03450 0.10 -0.5
720,369 + A4249_RS03450 0.10 +0.7
720,370 - A4249_RS03450 0.10 -1.1
720,370 - A4249_RS03450 0.10 -0.0
720,370 - A4249_RS03450 0.10 -0.0
720,370 - A4249_RS03450 0.10 -0.6
720,370 - A4249_RS03450 0.10 -0.1
720,370 - A4249_RS03450 0.10 -0.2
720,370 - A4249_RS03450 0.10 -0.3
720,370 - A4249_RS03450 0.10 +0.4
720,370 - A4249_RS03450 0.10 -0.4
720,370 - A4249_RS03450 0.10 -0.6
720,370 - A4249_RS03450 0.10 -0.3
720,370 - A4249_RS03450 0.10 -0.1
720,370 - A4249_RS03450 0.10 +0.4
720,370 - A4249_RS03450 0.10 -1.4
720,370 - A4249_RS03450 0.10 +0.0
720,370 - A4249_RS03450 0.10 +0.0
720,370 - A4249_RS03450 0.10 -0.2
720,370 - A4249_RS03450 0.10 -0.2
720,370 - A4249_RS03450 0.10 -1.1
720,370 - A4249_RS03450 0.10 +0.4
720,370 - A4249_RS03450 0.10 +0.7
720,372 + A4249_RS03450 0.11 +0.3
720,588 + A4249_RS03450 0.54 -0.7
720,588 + A4249_RS03450 0.54 +0.1
720,588 + A4249_RS03450 0.54 +0.2
720,589 - A4249_RS03450 0.54 -1.2
720,589 - A4249_RS03450 0.54 +0.8
720,648 + A4249_RS03450 0.66 +0.5
720,648 + A4249_RS03450 0.66 +0.0
720,648 + A4249_RS03450 0.66 -0.3
720,648 + A4249_RS03450 0.66 +0.4
720,648 + A4249_RS03450 0.66 -0.6
720,649 - A4249_RS03450 0.66 +0.0
720,649 - A4249_RS03450 0.66 +0.5
720,649 - A4249_RS03450 0.66 -0.3
720,649 - A4249_RS03450 0.66 +0.5
720,649 - A4249_RS03450 0.66 +1.1
720,649 - A4249_RS03450 0.66 +0.4
720,649 - A4249_RS03450 0.66 -0.2
720,649 - A4249_RS03450 0.66 -0.7
720,664 - A4249_RS03450 0.69 +0.5
720,664 - A4249_RS03450 0.69 -0.1
720,699 + A4249_RS03450 0.76 -2.2
720,934 + A4249_RS03455 0.19 -0.9
720,934 + A4249_RS03455 0.19 +0.3
721,041 + A4249_RS03455 0.36 +0.1
721,155 + A4249_RS03455 0.55 -0.4
721,155 + A4249_RS03455 0.55 -0.4
721,156 - A4249_RS03455 0.55 +0.1
721,284 + A4249_RS03455 0.77 +0.1
721,312 + A4249_RS03455 0.81 -0.1
721,312 + A4249_RS03455 0.81 -0.1
721,312 + A4249_RS03455 0.81 +0.9
721,356 + A4249_RS03455 0.89 +0.7
721,356 + A4249_RS03455 0.89 -0.4
721,357 - A4249_RS03455 0.89 -0.6
721,422 + -0.7
721,422 + -0.2
721,422 + -0.5
721,423 - +0.3
721,423 - +0.7
721,423 - -1.3
721,671 + A4249_RS03460 0.12 -0.5
721,705 - A4249_RS03460 0.14 +0.6
721,777 - A4249_RS03460 0.17 -0.3
721,777 - A4249_RS03460 0.17 +0.4
721,777 - A4249_RS03460 0.17 -0.2
721,806 + A4249_RS03460 0.19 -0.4
721,827 + A4249_RS03460 0.20 -0.3
721,827 + A4249_RS03460 0.20 -0.1
721,828 - A4249_RS03460 0.20 +0.3
721,828 - A4249_RS03460 0.20 +0.3
721,875 + A4249_RS03460 0.22 -1.2
721,876 - A4249_RS03460 0.22 +0.8
721,876 - A4249_RS03460 0.22 +0.4
722,251 - A4249_RS03460 0.40 +0.8

Or see this region's nucleotide sequence