Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS03015 and A4249_RS16490 are separated by 22 nucleotides A4249_RS16490 and A4249_RS03020 are separated by 43 nucleotides A4249_RS03020 and A4249_RS03025 are separated by 127 nucleotides
A4249_RS03015: A4249_RS03015 - RlmE family RNA methyltransferase, at 638,517 to 639,227
_RS03015
A4249_RS16490: A4249_RS16490 - hypothetical protein, at 639,250 to 639,627
_RS16490
A4249_RS03020: A4249_RS03020 - DUF2061 domain-containing protein, at 639,671 to 640,216
_RS03020
A4249_RS03025: A4249_RS03025 - IMP dehydrogenase, at 640,344 to 641,801
_RS03025
Position (kb) 639
640
641 Strain fitness (log2 ratio) -2
-1
0
1
2 at 639.225 kb on + strand at 639.370 kb on + strand, within A4249_RS16490 at 639.370 kb on + strand, within A4249_RS16490 at 639.371 kb on - strand, within A4249_RS16490 at 639.425 kb on - strand, within A4249_RS16490 at 639.461 kb on - strand, within A4249_RS16490 at 639.502 kb on + strand, within A4249_RS16490 at 639.502 kb on + strand, within A4249_RS16490 at 639.503 kb on - strand, within A4249_RS16490 at 639.503 kb on - strand, within A4249_RS16490 at 639.563 kb on + strand, within A4249_RS16490 at 639.563 kb on + strand, within A4249_RS16490 at 639.563 kb on + strand, within A4249_RS16490 at 639.564 kb on - strand, within A4249_RS16490 at 639.564 kb on - strand, within A4249_RS16490 at 639.564 kb on - strand, within A4249_RS16490 at 639.564 kb on - strand, within A4249_RS16490 at 639.567 kb on + strand, within A4249_RS16490 at 639.568 kb on - strand, within A4249_RS16490 at 639.628 kb on + strand at 639.628 kb on + strand at 639.629 kb on - strand at 639.629 kb on - strand at 639.629 kb on - strand at 639.629 kb on - strand at 639.629 kb on - strand at 639.648 kb on - strand at 639.648 kb on - strand at 639.666 kb on + strand at 639.673 kb on - strand at 639.673 kb on - strand at 639.813 kb on + strand, within A4249_RS03020 at 639.813 kb on + strand, within A4249_RS03020 at 639.813 kb on + strand, within A4249_RS03020 at 639.814 kb on - strand, within A4249_RS03020 at 639.814 kb on - strand, within A4249_RS03020 at 639.814 kb on - strand, within A4249_RS03020 at 639.814 kb on - strand, within A4249_RS03020 at 639.814 kb on - strand, within A4249_RS03020 at 639.852 kb on + strand, within A4249_RS03020 at 639.852 kb on + strand, within A4249_RS03020 at 639.852 kb on + strand, within A4249_RS03020 at 639.852 kb on + strand, within A4249_RS03020 at 639.852 kb on + strand, within A4249_RS03020 at 639.853 kb on - strand, within A4249_RS03020 at 639.853 kb on - strand, within A4249_RS03020 at 639.853 kb on - strand, within A4249_RS03020 at 639.992 kb on + strand, within A4249_RS03020 at 639.992 kb on + strand, within A4249_RS03020 at 639.992 kb on + strand, within A4249_RS03020 at 639.992 kb on + strand, within A4249_RS03020 at 639.993 kb on - strand, within A4249_RS03020 at 639.993 kb on - strand, within A4249_RS03020 at 639.993 kb on - strand, within A4249_RS03020 at 639.993 kb on - strand, within A4249_RS03020 at 639.993 kb on - strand, within A4249_RS03020 at 639.993 kb on - strand, within A4249_RS03020 at 639.994 kb on + strand, within A4249_RS03020 at 639.994 kb on + strand, within A4249_RS03020 at 639.995 kb on - strand, within A4249_RS03020 at 639.995 kb on - strand, within A4249_RS03020 at 639.995 kb on - strand, within A4249_RS03020 at 639.995 kb on - strand, within A4249_RS03020 at 640.051 kb on - strand, within A4249_RS03020 at 640.051 kb on - strand, within A4249_RS03020 at 640.161 kb on + strand, within A4249_RS03020 at 640.161 kb on + strand, within A4249_RS03020 at 640.161 kb on + strand, within A4249_RS03020 at 640.162 kb on - strand at 640.257 kb on + strand at 640.257 kb on + strand at 640.258 kb on - strand at 640.258 kb on - strand at 640.264 kb on + strand at 640.273 kb on + strand at 640.273 kb on + strand at 640.273 kb on + strand at 640.273 kb on + strand at 640.274 kb on - strand at 640.274 kb on - strand at 640.274 kb on - strand at 640.276 kb on - strand at 640.316 kb on + strand at 640.316 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 639,225 + -0.2 639,370 + A4249_RS16490 0.32 -1.1 639,370 + A4249_RS16490 0.32 -0.3 639,371 - A4249_RS16490 0.32 +0.3 639,425 - A4249_RS16490 0.46 +0.6 639,461 - A4249_RS16490 0.56 -0.3 639,502 + A4249_RS16490 0.67 +0.3 639,502 + A4249_RS16490 0.67 -0.4 639,503 - A4249_RS16490 0.67 +0.1 639,503 - A4249_RS16490 0.67 -0.1 639,563 + A4249_RS16490 0.83 -0.8 639,563 + A4249_RS16490 0.83 +0.1 639,563 + A4249_RS16490 0.83 -0.6 639,564 - A4249_RS16490 0.83 -0.7 639,564 - A4249_RS16490 0.83 -0.2 639,564 - A4249_RS16490 0.83 -0.1 639,564 - A4249_RS16490 0.83 +0.4 639,567 + A4249_RS16490 0.84 -1.1 639,568 - A4249_RS16490 0.84 +1.0 639,628 + -0.3 639,628 + +0.0 639,629 - +0.2 639,629 - -0.6 639,629 - -0.9 639,629 - +0.2 639,629 - +0.0 639,648 - +0.1 639,648 - +1.9 639,666 + -0.8 639,673 - +1.2 639,673 - -0.3 639,813 + A4249_RS03020 0.26 -1.6 639,813 + A4249_RS03020 0.26 -0.3 639,813 + A4249_RS03020 0.26 -0.3 639,814 - A4249_RS03020 0.26 -1.3 639,814 - A4249_RS03020 0.26 -0.8 639,814 - A4249_RS03020 0.26 -0.5 639,814 - A4249_RS03020 0.26 -0.6 639,814 - A4249_RS03020 0.26 -0.2 639,852 + A4249_RS03020 0.33 +0.2 639,852 + A4249_RS03020 0.33 +0.6 639,852 + A4249_RS03020 0.33 -0.0 639,852 + A4249_RS03020 0.33 +0.4 639,852 + A4249_RS03020 0.33 -0.3 639,853 - A4249_RS03020 0.33 -1.1 639,853 - A4249_RS03020 0.33 -2.3 639,853 - A4249_RS03020 0.33 -0.5 639,992 + A4249_RS03020 0.59 +0.0 639,992 + A4249_RS03020 0.59 -1.3 639,992 + A4249_RS03020 0.59 -0.7 639,992 + A4249_RS03020 0.59 -0.4 639,993 - A4249_RS03020 0.59 -0.7 639,993 - A4249_RS03020 0.59 -0.1 639,993 - A4249_RS03020 0.59 -0.3 639,993 - A4249_RS03020 0.59 -0.2 639,993 - A4249_RS03020 0.59 -0.6 639,993 - A4249_RS03020 0.59 +0.2 639,994 + A4249_RS03020 0.59 +0.0 639,994 + A4249_RS03020 0.59 -0.8 639,995 - A4249_RS03020 0.59 -1.2 639,995 - A4249_RS03020 0.59 -0.5 639,995 - A4249_RS03020 0.59 +0.3 639,995 - A4249_RS03020 0.59 -0.5 640,051 - A4249_RS03020 0.70 +0.2 640,051 - A4249_RS03020 0.70 +0.6 640,161 + A4249_RS03020 0.90 +0.6 640,161 + A4249_RS03020 0.90 -1.4 640,161 + A4249_RS03020 0.90 -0.0 640,162 - -0.5 640,257 + -0.3 640,257 + +0.4 640,258 - -0.2 640,258 - +0.9 640,264 + +0.4 640,273 + -1.5 640,273 + +0.4 640,273 + -0.5 640,273 + +0.1 640,274 - +0.7 640,274 - -0.4 640,274 - -0.4 640,276 - -0.1 640,316 + +0.0 640,316 + -0.5
Or see this region's nucleotide sequence