Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS03000 and A4249_RS03005 overlap by 8 nucleotides A4249_RS03005 and A4249_RS03010 are separated by 128 nucleotides A4249_RS03010 and A4249_RS03015 are separated by 72 nucleotides
A4249_RS02995: A4249_RS02995 - glycosyltransferase, at 634,528 to 635,766
_RS02995
A4249_RS03000: A4249_RS03000 - glycosyltransferase family 1 protein, at 635,712 to 636,764
_RS03000
A4249_RS03005: A4249_RS03005 - glycosyltransferase family 4 protein, at 636,757 to 637,854
_RS03005
A4249_RS03010: A4249_RS03010 - peptidylprolyl isomerase, at 637,983 to 638,444
_RS03010
A4249_RS03015: A4249_RS03015 - RlmE family RNA methyltransferase, at 638,517 to 639,227
_RS03015
Position (kb) 636
637
638 Strain fitness (log2 ratio) -2
-1
0
1 at 635.764 kb on + strand at 635.764 kb on + strand at 635.764 kb on + strand at 635.764 kb on + strand at 635.764 kb on + strand at 635.764 kb on + strand at 635.764 kb on + strand at 635.764 kb on + strand at 635.764 kb on + strand at 635.765 kb on - strand at 635.765 kb on - strand at 635.765 kb on - strand at 635.765 kb on - strand at 635.765 kb on - strand at 635.765 kb on - strand at 635.765 kb on - strand at 635.765 kb on - strand at 635.765 kb on - strand at 635.765 kb on - strand at 635.832 kb on - strand, within A4249_RS03000 at 635.870 kb on - strand, within A4249_RS03000 at 635.975 kb on - strand, within A4249_RS03000 at 636.192 kb on - strand, within A4249_RS03000 at 636.208 kb on + strand, within A4249_RS03000 at 636.208 kb on + strand, within A4249_RS03000 at 636.209 kb on - strand, within A4249_RS03000 at 636.582 kb on + strand, within A4249_RS03000 at 636.582 kb on + strand, within A4249_RS03000 at 636.582 kb on + strand, within A4249_RS03000 at 636.582 kb on + strand, within A4249_RS03000 at 636.582 kb on + strand, within A4249_RS03000 at 636.583 kb on - strand, within A4249_RS03000 at 636.583 kb on - strand, within A4249_RS03000 at 636.646 kb on + strand, within A4249_RS03000 at 636.646 kb on + strand, within A4249_RS03000 at 636.647 kb on - strand, within A4249_RS03000 at 636.647 kb on - strand, within A4249_RS03000 at 636.647 kb on - strand, within A4249_RS03000 at 636.647 kb on - strand, within A4249_RS03000 at 636.701 kb on - strand at 636.794 kb on + strand at 636.794 kb on + strand at 637.025 kb on + strand, within A4249_RS03005 at 637.026 kb on - strand, within A4249_RS03005 at 637.111 kb on + strand, within A4249_RS03005 at 637.111 kb on + strand, within A4249_RS03005 at 637.111 kb on + strand, within A4249_RS03005 at 637.111 kb on + strand, within A4249_RS03005 at 637.111 kb on + strand, within A4249_RS03005 at 637.112 kb on - strand, within A4249_RS03005 at 637.112 kb on - strand, within A4249_RS03005 at 637.517 kb on + strand, within A4249_RS03005 at 637.517 kb on + strand, within A4249_RS03005 at 637.518 kb on - strand, within A4249_RS03005 at 637.518 kb on - strand, within A4249_RS03005 at 637.943 kb on + strand at 637.944 kb on - strand at 638.089 kb on + strand, within A4249_RS03010 at 638.089 kb on + strand, within A4249_RS03010 at 638.089 kb on + strand, within A4249_RS03010 at 638.089 kb on + strand, within A4249_RS03010 at 638.090 kb on - strand, within A4249_RS03010 at 638.100 kb on + strand, within A4249_RS03010 at 638.101 kb on - strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.315 kb on - strand, within A4249_RS03010 at 638.315 kb on - strand, within A4249_RS03010 at 638.315 kb on - strand, within A4249_RS03010 at 638.315 kb on - strand, within A4249_RS03010 at 638.482 kb on + strand at 638.482 kb on + strand at 638.482 kb on + strand at 638.483 kb on - strand at 638.483 kb on - strand at 638.483 kb on - strand at 638.483 kb on - strand at 638.483 kb on - strand at 638.505 kb on + strand at 638.505 kb on + strand at 638.505 kb on + strand at 638.506 kb on - strand at 638.506 kb on - strand at 638.506 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 635,764 + +0.7 635,764 + +0.7 635,764 + +0.0 635,764 + +0.2 635,764 + -0.3 635,764 + +0.7 635,764 + +0.0 635,764 + +0.4 635,764 + +0.4 635,765 - +0.4 635,765 - +1.2 635,765 - -2.1 635,765 - -0.1 635,765 - -0.8 635,765 - -0.3 635,765 - -0.1 635,765 - -0.5 635,765 - +0.3 635,765 - +0.5 635,832 - A4249_RS03000 0.11 -0.4 635,870 - A4249_RS03000 0.15 -0.7 635,975 - A4249_RS03000 0.25 -1.0 636,192 - A4249_RS03000 0.46 -0.4 636,208 + A4249_RS03000 0.47 +0.0 636,208 + A4249_RS03000 0.47 -0.2 636,209 - A4249_RS03000 0.47 -0.8 636,582 + A4249_RS03000 0.83 +0.0 636,582 + A4249_RS03000 0.83 +0.4 636,582 + A4249_RS03000 0.83 -0.2 636,582 + A4249_RS03000 0.83 +0.2 636,582 + A4249_RS03000 0.83 -1.4 636,583 - A4249_RS03000 0.83 -0.6 636,583 - A4249_RS03000 0.83 -0.3 636,646 + A4249_RS03000 0.89 -0.5 636,646 + A4249_RS03000 0.89 -0.3 636,647 - A4249_RS03000 0.89 +0.0 636,647 - A4249_RS03000 0.89 -0.2 636,647 - A4249_RS03000 0.89 -0.0 636,647 - A4249_RS03000 0.89 +1.1 636,701 - -0.3 636,794 + -0.3 636,794 + -0.6 637,025 + A4249_RS03005 0.24 +0.4 637,026 - A4249_RS03005 0.24 +0.2 637,111 + A4249_RS03005 0.32 -0.3 637,111 + A4249_RS03005 0.32 +0.0 637,111 + A4249_RS03005 0.32 -0.1 637,111 + A4249_RS03005 0.32 +1.5 637,111 + A4249_RS03005 0.32 +0.3 637,112 - A4249_RS03005 0.32 +1.0 637,112 - A4249_RS03005 0.32 +0.6 637,517 + A4249_RS03005 0.69 +0.4 637,517 + A4249_RS03005 0.69 +1.3 637,518 - A4249_RS03005 0.69 +0.5 637,518 - A4249_RS03005 0.69 +0.2 637,943 + -0.7 637,944 - -0.1 638,089 + A4249_RS03010 0.23 +0.4 638,089 + A4249_RS03010 0.23 -0.1 638,089 + A4249_RS03010 0.23 -1.3 638,089 + A4249_RS03010 0.23 -1.3 638,090 - A4249_RS03010 0.23 -1.2 638,100 + A4249_RS03010 0.25 -0.3 638,101 - A4249_RS03010 0.26 -0.3 638,314 + A4249_RS03010 0.72 +0.0 638,314 + A4249_RS03010 0.72 +0.4 638,314 + A4249_RS03010 0.72 -0.5 638,314 + A4249_RS03010 0.72 -0.4 638,314 + A4249_RS03010 0.72 -0.4 638,314 + A4249_RS03010 0.72 +0.3 638,314 + A4249_RS03010 0.72 -0.5 638,314 + A4249_RS03010 0.72 +0.5 638,314 + A4249_RS03010 0.72 +0.8 638,314 + A4249_RS03010 0.72 -0.5 638,314 + A4249_RS03010 0.72 -0.0 638,315 - A4249_RS03010 0.72 -0.7 638,315 - A4249_RS03010 0.72 +0.8 638,315 - A4249_RS03010 0.72 -0.5 638,315 - A4249_RS03010 0.72 -0.9 638,482 + +0.7 638,482 + +0.3 638,482 + +1.0 638,483 - -0.4 638,483 - +0.3 638,483 - +0.2 638,483 - +0.9 638,483 - +0.2 638,505 + +1.0 638,505 + +0.7 638,505 + -0.1 638,506 - -0.2 638,506 - +0.1 638,506 - +0.2
Or see this region's nucleotide sequence