Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02630 and A4249_RS02635 are separated by 183 nucleotides A4249_RS02635 and A4249_RS02640 overlap by 4 nucleotides A4249_RS02640 and A4249_RS02645 overlap by 4 nucleotides
A4249_RS02630: A4249_RS02630 - S8 family serine peptidase, at 563,739 to 564,995
_RS02630
A4249_RS02635: A4249_RS02635 - RNA polymerase sigma factor, at 565,179 to 565,652
_RS02635
A4249_RS02640: A4249_RS02640 - hypothetical protein, at 565,649 to 566,371
_RS02640
A4249_RS02645: A4249_RS02645 - cobalamin biosynthesis protein CbiG, at 566,368 to 567,285
_RS02645
Position (kb) 565
566
567 Strain fitness (log2 ratio) -2
-1
0
1 at 564.812 kb on + strand, within A4249_RS02630 at 564.812 kb on + strand, within A4249_RS02630 at 564.813 kb on - strand, within A4249_RS02630 at 564.813 kb on - strand, within A4249_RS02630 at 564.813 kb on - strand, within A4249_RS02630 at 565.075 kb on - strand at 565.345 kb on + strand, within A4249_RS02635 at 565.539 kb on + strand, within A4249_RS02635 at 565.642 kb on + strand at 565.642 kb on + strand at 565.643 kb on - strand at 565.974 kb on + strand, within A4249_RS02640 at 565.975 kb on - strand, within A4249_RS02640 at 566.369 kb on + strand at 566.777 kb on + strand, within A4249_RS02645 at 567.167 kb on + strand, within A4249_RS02645 at 567.168 kb on - strand, within A4249_RS02645 at 567.168 kb on - strand, within A4249_RS02645 at 567.261 kb on + strand at 567.261 kb on + strand at 567.262 kb on - strand at 567.263 kb on + strand at 567.263 kb on + strand at 567.263 kb on + strand at 567.263 kb on + strand at 567.263 kb on + strand at 567.264 kb on - strand at 567.264 kb on - strand at 567.264 kb on - strand at 567.264 kb on - strand at 567.264 kb on - strand at 567.264 kb on - strand at 567.264 kb on - strand at 567.264 kb on - strand at 567.300 kb on + strand at 567.300 kb on + strand at 567.301 kb on - strand at 567.301 kb on - strand at 567.301 kb on - strand at 567.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 564,812 + A4249_RS02630 0.85 +0.8 564,812 + A4249_RS02630 0.85 +0.2 564,813 - A4249_RS02630 0.85 -0.8 564,813 - A4249_RS02630 0.85 -0.7 564,813 - A4249_RS02630 0.85 +0.9 565,075 - -0.4 565,345 + A4249_RS02635 0.35 +0.4 565,539 + A4249_RS02635 0.76 +0.6 565,642 + -0.6 565,642 + +0.6 565,643 - +0.1 565,974 + A4249_RS02640 0.45 -0.1 565,975 - A4249_RS02640 0.45 -0.9 566,369 + -0.1 566,777 + A4249_RS02645 0.45 -0.4 567,167 + A4249_RS02645 0.87 -0.6 567,168 - A4249_RS02645 0.87 +0.9 567,168 - A4249_RS02645 0.87 +1.3 567,261 + -0.7 567,261 + -0.6 567,262 - +0.5 567,263 + +1.7 567,263 + +0.4 567,263 + -2.0 567,263 + -0.3 567,263 + -1.1 567,264 - -0.4 567,264 - +1.2 567,264 - -0.4 567,264 - -0.1 567,264 - +0.2 567,264 - +0.5 567,264 - -0.6 567,264 - -1.1 567,300 + +0.9 567,300 + -0.4 567,301 - +0.4 567,301 - +0.2 567,301 - +0.4 567,335 - -1.9
Or see this region's nucleotide sequence