Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02550 and A4249_RS02555 overlap by 4 nucleotides A4249_RS02555 and A4249_RS02560 are separated by 194 nucleotides A4249_RS02560 and A4249_RS02565 are separated by 16 nucleotides
A4249_RS02550: A4249_RS02550 - dipeptidase, at 546,221 to 547,480
_RS02550
A4249_RS02555: A4249_RS02555 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 547,477 to 547,926
_RS02555
A4249_RS02560: A4249_RS02560 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 548,121 to 548,678
_RS02560
A4249_RS02565: A4249_RS02565 - cytochrome b N-terminal domain-containing protein, at 548,695 to 549,999
_RS02565
Position (kb) 547
548 Strain fitness (log2 ratio) -2
-1
0
1
2 at 546.494 kb on + strand, within A4249_RS02550 at 546.494 kb on + strand, within A4249_RS02550 at 546.494 kb on + strand, within A4249_RS02550 at 546.494 kb on + strand, within A4249_RS02550 at 546.494 kb on + strand, within A4249_RS02550 at 546.494 kb on + strand, within A4249_RS02550 at 546.494 kb on + strand, within A4249_RS02550 at 546.495 kb on - strand, within A4249_RS02550 at 546.495 kb on - strand, within A4249_RS02550 at 546.495 kb on - strand, within A4249_RS02550 at 546.495 kb on - strand, within A4249_RS02550 at 546.495 kb on - strand, within A4249_RS02550 at 546.495 kb on - strand, within A4249_RS02550 at 546.495 kb on - strand, within A4249_RS02550 at 546.495 kb on - strand, within A4249_RS02550 at 546.495 kb on - strand, within A4249_RS02550 at 546.586 kb on + strand, within A4249_RS02550 at 546.587 kb on - strand, within A4249_RS02550 at 546.587 kb on - strand, within A4249_RS02550 at 546.713 kb on + strand, within A4249_RS02550 at 546.714 kb on - strand, within A4249_RS02550 at 546.731 kb on + strand, within A4249_RS02550 at 546.731 kb on + strand, within A4249_RS02550 at 546.731 kb on + strand, within A4249_RS02550 at 546.731 kb on + strand, within A4249_RS02550 at 546.731 kb on + strand, within A4249_RS02550 at 546.731 kb on + strand, within A4249_RS02550 at 546.731 kb on + strand, within A4249_RS02550 at 546.731 kb on + strand, within A4249_RS02550 at 546.732 kb on - strand, within A4249_RS02550 at 546.732 kb on - strand, within A4249_RS02550 at 546.732 kb on - strand, within A4249_RS02550 at 546.732 kb on - strand, within A4249_RS02550 at 547.267 kb on + strand, within A4249_RS02550 at 547.307 kb on + strand, within A4249_RS02550 at 547.307 kb on + strand, within A4249_RS02550 at 547.308 kb on - strand, within A4249_RS02550 at 547.479 kb on - strand at 547.604 kb on + strand, within A4249_RS02555 at 547.604 kb on + strand, within A4249_RS02555 at 547.604 kb on + strand, within A4249_RS02555 at 547.605 kb on - strand, within A4249_RS02555 at 547.605 kb on - strand, within A4249_RS02555 at 547.605 kb on - strand, within A4249_RS02555 at 547.605 kb on - strand, within A4249_RS02555 at 547.645 kb on - strand, within A4249_RS02555 at 547.695 kb on + strand, within A4249_RS02555 at 547.695 kb on + strand, within A4249_RS02555 at 547.695 kb on + strand, within A4249_RS02555 at 547.695 kb on + strand, within A4249_RS02555 at 547.695 kb on + strand, within A4249_RS02555 at 547.929 kb on + strand at 547.929 kb on + strand at 547.929 kb on + strand at 547.929 kb on + strand at 547.929 kb on + strand at 547.929 kb on + strand at 547.930 kb on - strand at 547.930 kb on - strand at 547.930 kb on - strand at 547.930 kb on - strand at 547.941 kb on + strand at 547.941 kb on + strand at 547.941 kb on + strand at 547.941 kb on + strand at 547.941 kb on + strand at 547.941 kb on + strand at 547.941 kb on + strand at 547.941 kb on + strand at 547.942 kb on - strand at 547.942 kb on - strand at 547.942 kb on - strand at 547.942 kb on - strand at 548.141 kb on + strand at 548.192 kb on + strand, within A4249_RS02560 at 548.192 kb on + strand, within A4249_RS02560 at 548.192 kb on + strand, within A4249_RS02560 at 548.192 kb on + strand, within A4249_RS02560 at 548.192 kb on + strand, within A4249_RS02560 at 548.193 kb on - strand, within A4249_RS02560 at 548.193 kb on - strand, within A4249_RS02560 at 548.196 kb on + strand, within A4249_RS02560 at 548.196 kb on + strand, within A4249_RS02560 at 548.196 kb on + strand, within A4249_RS02560 at 548.196 kb on + strand, within A4249_RS02560 at 548.196 kb on + strand, within A4249_RS02560 at 548.196 kb on + strand, within A4249_RS02560 at 548.196 kb on + strand, within A4249_RS02560 at 548.196 kb on + strand, within A4249_RS02560 at 548.197 kb on - strand, within A4249_RS02560 at 548.197 kb on - strand, within A4249_RS02560 at 548.197 kb on - strand, within A4249_RS02560 at 548.197 kb on - strand, within A4249_RS02560 at 548.197 kb on - strand, within A4249_RS02560 at 548.197 kb on - strand, within A4249_RS02560 at 548.280 kb on - strand, within A4249_RS02560 at 548.280 kb on - strand, within A4249_RS02560 at 548.481 kb on + strand, within A4249_RS02560 at 548.481 kb on + strand, within A4249_RS02560 at 548.481 kb on + strand, within A4249_RS02560 at 548.481 kb on + strand, within A4249_RS02560 at 548.481 kb on + strand, within A4249_RS02560 at 548.482 kb on - strand, within A4249_RS02560 at 548.504 kb on + strand, within A4249_RS02560 at 548.505 kb on - strand, within A4249_RS02560 at 548.505 kb on - strand, within A4249_RS02560 at 548.580 kb on + strand, within A4249_RS02560 at 548.581 kb on - strand, within A4249_RS02560 at 548.581 kb on - strand, within A4249_RS02560 at 548.581 kb on - strand, within A4249_RS02560 at 548.603 kb on + strand, within A4249_RS02560 at 548.604 kb on - strand, within A4249_RS02560 at 548.640 kb on + strand at 548.641 kb on - strand at 548.646 kb on + strand at 548.646 kb on + strand at 548.646 kb on + strand at 548.646 kb on + strand at 548.646 kb on + strand at 548.646 kb on + strand at 548.646 kb on + strand at 548.646 kb on + strand at 548.646 kb on + strand at 548.647 kb on - strand at 548.647 kb on - strand at 548.647 kb on - strand at 548.647 kb on - strand at 548.647 kb on - strand at 548.647 kb on - strand at 548.647 kb on - strand at 548.716 kb on + strand at 548.716 kb on + strand at 548.716 kb on + strand at 548.716 kb on + strand at 548.716 kb on + strand at 548.716 kb on + strand at 548.716 kb on + strand at 548.717 kb on - strand at 548.717 kb on - strand at 548.717 kb on - strand at 548.785 kb on + strand at 548.785 kb on + strand at 548.785 kb on + strand at 548.785 kb on + strand at 548.785 kb on + strand at 548.785 kb on + strand at 548.785 kb on + strand at 548.785 kb on + strand at 548.785 kb on + strand at 548.785 kb on + strand at 548.785 kb on + strand at 548.786 kb on - strand at 548.786 kb on - strand at 548.786 kb on - strand at 548.786 kb on - strand at 548.786 kb on - strand at 548.786 kb on - strand at 548.786 kb on - strand at 548.786 kb on - strand at 548.786 kb on - strand at 548.786 kb on - strand at 548.818 kb on + strand at 548.818 kb on + strand at 548.818 kb on + strand at 548.818 kb on + strand at 548.818 kb on + strand at 548.819 kb on - strand at 548.819 kb on - strand at 548.819 kb on - strand at 548.819 kb on - strand at 548.819 kb on - strand at 548.819 kb on - strand at 548.896 kb on + strand, within A4249_RS02565 at 548.896 kb on + strand, within A4249_RS02565 at 548.896 kb on + strand, within A4249_RS02565 at 548.896 kb on + strand, within A4249_RS02565 at 548.896 kb on + strand, within A4249_RS02565 at 548.896 kb on + strand, within A4249_RS02565 at 548.896 kb on + strand, within A4249_RS02565 at 548.896 kb on + strand, within A4249_RS02565 at 548.896 kb on + strand, within A4249_RS02565 at 548.897 kb on - strand, within A4249_RS02565 at 548.897 kb on - strand, within A4249_RS02565 at 548.897 kb on - strand, within A4249_RS02565 at 548.897 kb on - strand, within A4249_RS02565 at 548.897 kb on - strand, within A4249_RS02565 at 548.897 kb on - strand, within A4249_RS02565 at 548.898 kb on + strand, within A4249_RS02565 at 548.898 kb on + strand, within A4249_RS02565 at 548.899 kb on - strand, within A4249_RS02565 at 548.899 kb on - strand, within A4249_RS02565 at 548.899 kb on - strand, within A4249_RS02565
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 546,494 + A4249_RS02550 0.22 +1.9 546,494 + A4249_RS02550 0.22 -1.2 546,494 + A4249_RS02550 0.22 -0.9 546,494 + A4249_RS02550 0.22 -2.3 546,494 + A4249_RS02550 0.22 -0.1 546,494 + A4249_RS02550 0.22 +0.4 546,494 + A4249_RS02550 0.22 -0.1 546,495 - A4249_RS02550 0.22 -0.7 546,495 - A4249_RS02550 0.22 -0.5 546,495 - A4249_RS02550 0.22 -0.6 546,495 - A4249_RS02550 0.22 +0.2 546,495 - A4249_RS02550 0.22 +0.4 546,495 - A4249_RS02550 0.22 +0.2 546,495 - A4249_RS02550 0.22 -0.3 546,495 - A4249_RS02550 0.22 +0.4 546,495 - A4249_RS02550 0.22 -0.1 546,586 + A4249_RS02550 0.29 -1.2 546,587 - A4249_RS02550 0.29 +0.3 546,587 - A4249_RS02550 0.29 -0.2 546,713 + A4249_RS02550 0.39 -1.0 546,714 - A4249_RS02550 0.39 +0.4 546,731 + A4249_RS02550 0.40 +0.3 546,731 + A4249_RS02550 0.40 +0.5 546,731 + A4249_RS02550 0.40 -0.3 546,731 + A4249_RS02550 0.40 -0.4 546,731 + A4249_RS02550 0.40 -1.3 546,731 + A4249_RS02550 0.40 -0.6 546,731 + A4249_RS02550 0.40 +0.5 546,731 + A4249_RS02550 0.40 -0.2 546,732 - A4249_RS02550 0.41 -0.3 546,732 - A4249_RS02550 0.41 -1.0 546,732 - A4249_RS02550 0.41 +0.3 546,732 - A4249_RS02550 0.41 +1.0 547,267 + A4249_RS02550 0.83 -0.4 547,307 + A4249_RS02550 0.86 -0.2 547,307 + A4249_RS02550 0.86 -0.1 547,308 - A4249_RS02550 0.86 -0.2 547,479 - +0.9 547,604 + A4249_RS02555 0.28 -0.3 547,604 + A4249_RS02555 0.28 -1.8 547,604 + A4249_RS02555 0.28 -1.6 547,605 - A4249_RS02555 0.28 +0.2 547,605 - A4249_RS02555 0.28 -0.0 547,605 - A4249_RS02555 0.28 -0.9 547,605 - A4249_RS02555 0.28 +0.1 547,645 - A4249_RS02555 0.37 -0.6 547,695 + A4249_RS02555 0.48 -0.6 547,695 + A4249_RS02555 0.48 -0.3 547,695 + A4249_RS02555 0.48 +0.2 547,695 + A4249_RS02555 0.48 -0.7 547,695 + A4249_RS02555 0.48 +0.3 547,929 + +0.3 547,929 + +0.1 547,929 + +0.5 547,929 + +0.4 547,929 + -0.3 547,929 + -0.1 547,930 - -0.7 547,930 - -0.2 547,930 - +0.7 547,930 - -0.2 547,941 + +0.6 547,941 + -0.7 547,941 + +0.5 547,941 + -1.6 547,941 + -0.2 547,941 + +1.0 547,941 + -0.4 547,941 + +0.5 547,942 - -0.5 547,942 - -0.2 547,942 - +0.5 547,942 - +0.1 548,141 + -1.4 548,192 + A4249_RS02560 0.13 +1.0 548,192 + A4249_RS02560 0.13 -0.0 548,192 + A4249_RS02560 0.13 +0.1 548,192 + A4249_RS02560 0.13 +1.2 548,192 + A4249_RS02560 0.13 -0.5 548,193 - A4249_RS02560 0.13 -0.3 548,193 - A4249_RS02560 0.13 -0.3 548,196 + A4249_RS02560 0.13 +0.4 548,196 + A4249_RS02560 0.13 -0.4 548,196 + A4249_RS02560 0.13 +0.0 548,196 + A4249_RS02560 0.13 +0.2 548,196 + A4249_RS02560 0.13 -0.4 548,196 + A4249_RS02560 0.13 -0.9 548,196 + A4249_RS02560 0.13 +0.5 548,196 + A4249_RS02560 0.13 +1.2 548,197 - A4249_RS02560 0.14 +0.6 548,197 - A4249_RS02560 0.14 +1.3 548,197 - A4249_RS02560 0.14 +0.7 548,197 - A4249_RS02560 0.14 +0.7 548,197 - A4249_RS02560 0.14 +0.2 548,197 - A4249_RS02560 0.14 +1.4 548,280 - A4249_RS02560 0.28 +0.9 548,280 - A4249_RS02560 0.28 -0.3 548,481 + A4249_RS02560 0.65 +0.6 548,481 + A4249_RS02560 0.65 -0.2 548,481 + A4249_RS02560 0.65 +0.1 548,481 + A4249_RS02560 0.65 -0.8 548,481 + A4249_RS02560 0.65 +2.0 548,482 - A4249_RS02560 0.65 +0.7 548,504 + A4249_RS02560 0.69 -0.6 548,505 - A4249_RS02560 0.69 -0.6 548,505 - A4249_RS02560 0.69 -0.1 548,580 + A4249_RS02560 0.82 +0.1 548,581 - A4249_RS02560 0.82 +0.1 548,581 - A4249_RS02560 0.82 -0.1 548,581 - A4249_RS02560 0.82 +0.5 548,603 + A4249_RS02560 0.86 -1.1 548,604 - A4249_RS02560 0.87 -0.6 548,640 + -0.1 548,641 - +0.7 548,646 + +0.2 548,646 + -1.4 548,646 + -0.5 548,646 + -0.6 548,646 + -0.1 548,646 + +0.2 548,646 + +0.4 548,646 + -0.2 548,646 + +0.2 548,647 - +0.8 548,647 - -0.2 548,647 - -0.7 548,647 - -0.9 548,647 - +0.7 548,647 - -0.6 548,647 - -0.5 548,716 + +0.7 548,716 + +0.1 548,716 + -1.2 548,716 + +0.3 548,716 + +0.8 548,716 + +0.8 548,716 + +0.2 548,717 - -0.0 548,717 - -0.9 548,717 - -1.3 548,785 + +0.6 548,785 + +0.2 548,785 + +1.3 548,785 + -0.9 548,785 + +0.2 548,785 + +0.2 548,785 + +0.7 548,785 + +0.6 548,785 + -0.3 548,785 + +0.0 548,785 + -0.3 548,786 - -0.1 548,786 - +0.5 548,786 - +0.2 548,786 - +0.5 548,786 - -1.2 548,786 - +0.2 548,786 - +1.3 548,786 - +0.8 548,786 - -0.3 548,786 - +1.0 548,818 + -0.8 548,818 + +0.2 548,818 + +0.5 548,818 + +1.5 548,818 + +0.0 548,819 - +0.4 548,819 - -0.0 548,819 - -0.1 548,819 - +1.3 548,819 - -1.3 548,819 - +0.2 548,896 + A4249_RS02565 0.15 -0.2 548,896 + A4249_RS02565 0.15 -0.1 548,896 + A4249_RS02565 0.15 +0.1 548,896 + A4249_RS02565 0.15 -0.4 548,896 + A4249_RS02565 0.15 +0.0 548,896 + A4249_RS02565 0.15 +0.4 548,896 + A4249_RS02565 0.15 +0.3 548,896 + A4249_RS02565 0.15 -0.1 548,896 + A4249_RS02565 0.15 -0.5 548,897 - A4249_RS02565 0.15 -0.2 548,897 - A4249_RS02565 0.15 -0.8 548,897 - A4249_RS02565 0.15 -0.2 548,897 - A4249_RS02565 0.15 +0.8 548,897 - A4249_RS02565 0.15 +1.7 548,897 - A4249_RS02565 0.15 +0.0 548,898 + A4249_RS02565 0.16 -1.4 548,898 + A4249_RS02565 0.16 -0.2 548,899 - A4249_RS02565 0.16 +0.6 548,899 - A4249_RS02565 0.16 +0.1 548,899 - A4249_RS02565 0.16 +0.2
Or see this region's nucleotide sequence