Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02350 and A4249_RS02355 overlap by 1 nucleotides A4249_RS02355 and A4249_RS02360 are separated by 60 nucleotides A4249_RS02360 and A4249_RS02365 overlap by 8 nucleotides
A4249_RS02350: A4249_RS02350 - GMC family oxidoreductase, at 498,514 to 500,058
_RS02350
A4249_RS02355: A4249_RS02355 - SDR family oxidoreductase, at 500,058 to 500,861
_RS02355
A4249_RS02360: A4249_RS02360 - SDR family oxidoreductase, at 500,922 to 501,815
_RS02360
A4249_RS02365: A4249_RS02365 - glycoside hydrolase family 15 protein, at 501,808 to 503,655
_RS02365
Position (kb) 500
501 Strain fitness (log2 ratio) -2
-1
0
1 at 499.221 kb on - strand, within A4249_RS02350 at 499.264 kb on + strand, within A4249_RS02350 at 499.264 kb on + strand, within A4249_RS02350 at 499.264 kb on + strand, within A4249_RS02350 at 499.265 kb on - strand, within A4249_RS02350 at 499.265 kb on - strand, within A4249_RS02350 at 499.265 kb on - strand, within A4249_RS02350 at 499.265 kb on - strand, within A4249_RS02350 at 499.265 kb on - strand, within A4249_RS02350 at 499.265 kb on - strand, within A4249_RS02350 at 499.361 kb on + strand, within A4249_RS02350 at 499.361 kb on + strand, within A4249_RS02350 at 499.362 kb on - strand, within A4249_RS02350 at 499.362 kb on - strand, within A4249_RS02350 at 499.362 kb on - strand, within A4249_RS02350 at 499.362 kb on - strand, within A4249_RS02350 at 499.362 kb on - strand, within A4249_RS02350 at 499.362 kb on - strand, within A4249_RS02350 at 499.362 kb on - strand, within A4249_RS02350 at 499.440 kb on + strand, within A4249_RS02350 at 499.440 kb on + strand, within A4249_RS02350 at 499.440 kb on + strand, within A4249_RS02350 at 499.440 kb on + strand, within A4249_RS02350 at 499.441 kb on - strand, within A4249_RS02350 at 499.441 kb on - strand, within A4249_RS02350 at 499.441 kb on - strand, within A4249_RS02350 at 499.441 kb on - strand, within A4249_RS02350 at 499.441 kb on - strand, within A4249_RS02350 at 499.472 kb on + strand, within A4249_RS02350 at 499.473 kb on - strand, within A4249_RS02350 at 499.473 kb on - strand, within A4249_RS02350 at 499.523 kb on - strand, within A4249_RS02350 at 499.523 kb on - strand, within A4249_RS02350 at 499.526 kb on + strand, within A4249_RS02350 at 499.526 kb on + strand, within A4249_RS02350 at 499.526 kb on + strand, within A4249_RS02350 at 499.527 kb on - strand, within A4249_RS02350 at 499.527 kb on - strand, within A4249_RS02350 at 499.527 kb on - strand, within A4249_RS02350 at 499.589 kb on + strand, within A4249_RS02350 at 499.590 kb on - strand, within A4249_RS02350 at 499.612 kb on - strand, within A4249_RS02350 at 499.616 kb on + strand, within A4249_RS02350 at 499.617 kb on - strand, within A4249_RS02350 at 499.624 kb on + strand, within A4249_RS02350 at 499.624 kb on + strand, within A4249_RS02350 at 499.624 kb on + strand, within A4249_RS02350 at 499.625 kb on - strand, within A4249_RS02350 at 499.625 kb on - strand, within A4249_RS02350 at 499.744 kb on + strand, within A4249_RS02350 at 499.744 kb on + strand, within A4249_RS02350 at 499.745 kb on - strand, within A4249_RS02350 at 499.745 kb on - strand, within A4249_RS02350 at 499.745 kb on - strand, within A4249_RS02350 at 499.745 kb on - strand, within A4249_RS02350 at 499.745 kb on - strand, within A4249_RS02350 at 499.824 kb on + strand, within A4249_RS02350 at 499.824 kb on + strand, within A4249_RS02350 at 499.824 kb on + strand, within A4249_RS02350 at 499.825 kb on - strand, within A4249_RS02350 at 499.936 kb on + strand at 499.936 kb on + strand at 499.936 kb on + strand at 499.936 kb on + strand at 499.936 kb on + strand at 499.937 kb on - strand at 499.937 kb on - strand at 499.937 kb on - strand at 499.937 kb on - strand at 499.937 kb on - strand at 499.988 kb on + strand at 500.153 kb on - strand, within A4249_RS02355 at 500.153 kb on - strand, within A4249_RS02355 at 500.249 kb on + strand, within A4249_RS02355 at 500.249 kb on + strand, within A4249_RS02355 at 500.250 kb on - strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.316 kb on + strand, within A4249_RS02355 at 500.317 kb on - strand, within A4249_RS02355 at 500.317 kb on - strand, within A4249_RS02355 at 500.317 kb on - strand, within A4249_RS02355 at 500.317 kb on - strand, within A4249_RS02355 at 500.317 kb on - strand, within A4249_RS02355 at 500.317 kb on - strand, within A4249_RS02355 at 500.317 kb on - strand, within A4249_RS02355 at 500.317 kb on - strand, within A4249_RS02355 at 500.317 kb on - strand, within A4249_RS02355 at 500.317 kb on - strand, within A4249_RS02355 at 500.317 kb on - strand, within A4249_RS02355 at 500.317 kb on - strand, within A4249_RS02355 at 500.317 kb on - strand, within A4249_RS02355 at 500.468 kb on + strand, within A4249_RS02355 at 500.469 kb on - strand, within A4249_RS02355 at 500.505 kb on + strand, within A4249_RS02355 at 500.505 kb on + strand, within A4249_RS02355 at 500.506 kb on - strand, within A4249_RS02355 at 500.506 kb on - strand, within A4249_RS02355 at 500.506 kb on - strand, within A4249_RS02355 at 500.523 kb on + strand, within A4249_RS02355 at 500.523 kb on + strand, within A4249_RS02355 at 500.524 kb on - strand, within A4249_RS02355 at 500.577 kb on + strand, within A4249_RS02355 at 500.804 kb on + strand at 500.805 kb on - strand at 500.897 kb on + strand at 500.897 kb on + strand at 500.898 kb on - strand at 500.898 kb on - strand at 500.915 kb on + strand at 500.915 kb on + strand at 500.915 kb on + strand at 500.916 kb on - strand at 500.916 kb on - strand at 500.971 kb on + strand at 500.971 kb on + strand at 500.971 kb on + strand at 500.971 kb on + strand at 500.971 kb on + strand at 500.971 kb on + strand at 500.971 kb on + strand at 500.971 kb on + strand at 500.971 kb on + strand at 500.971 kb on + strand at 500.972 kb on - strand at 500.972 kb on - strand at 500.972 kb on - strand at 500.972 kb on - strand at 500.972 kb on - strand at 500.972 kb on - strand at 500.972 kb on - strand at 500.972 kb on - strand at 500.972 kb on - strand at 500.972 kb on - strand at 500.972 kb on - strand at 500.972 kb on - strand at 500.972 kb on - strand at 500.972 kb on - strand at 500.972 kb on - strand at 501.001 kb on + strand at 501.001 kb on + strand at 501.001 kb on + strand at 501.001 kb on + strand at 501.001 kb on + strand at 501.001 kb on + strand at 501.001 kb on + strand at 501.001 kb on + strand at 501.001 kb on + strand at 501.001 kb on + strand at 501.001 kb on + strand at 501.001 kb on + strand at 501.002 kb on - strand at 501.002 kb on - strand at 501.002 kb on - strand at 501.002 kb on - strand at 501.002 kb on - strand at 501.002 kb on - strand at 501.142 kb on - strand, within A4249_RS02360 at 501.142 kb on - strand, within A4249_RS02360 at 501.181 kb on + strand, within A4249_RS02360 at 501.211 kb on + strand, within A4249_RS02360 at 501.211 kb on + strand, within A4249_RS02360 at 501.211 kb on + strand, within A4249_RS02360 at 501.211 kb on + strand, within A4249_RS02360 at 501.211 kb on + strand, within A4249_RS02360 at 501.211 kb on + strand, within A4249_RS02360 at 501.211 kb on + strand, within A4249_RS02360 at 501.211 kb on + strand, within A4249_RS02360 at 501.212 kb on - strand, within A4249_RS02360 at 501.238 kb on + strand, within A4249_RS02360 at 501.238 kb on + strand, within A4249_RS02360 at 501.238 kb on + strand, within A4249_RS02360 at 501.239 kb on - strand, within A4249_RS02360 at 501.239 kb on - strand, within A4249_RS02360 at 501.239 kb on - strand, within A4249_RS02360 at 501.322 kb on + strand, within A4249_RS02360 at 501.322 kb on + strand, within A4249_RS02360 at 501.322 kb on + strand, within A4249_RS02360 at 501.322 kb on + strand, within A4249_RS02360 at 501.322 kb on + strand, within A4249_RS02360 at 501.322 kb on + strand, within A4249_RS02360 at 501.322 kb on + strand, within A4249_RS02360 at 501.323 kb on - strand, within A4249_RS02360 at 501.323 kb on - strand, within A4249_RS02360 at 501.323 kb on - strand, within A4249_RS02360 at 501.568 kb on + strand, within A4249_RS02360 at 501.568 kb on + strand, within A4249_RS02360 at 501.568 kb on + strand, within A4249_RS02360 at 501.568 kb on + strand, within A4249_RS02360 at 501.568 kb on + strand, within A4249_RS02360 at 501.569 kb on - strand, within A4249_RS02360 at 501.569 kb on - strand, within A4249_RS02360 at 501.569 kb on - strand, within A4249_RS02360 at 501.569 kb on - strand, within A4249_RS02360 at 501.569 kb on - strand, within A4249_RS02360 at 501.601 kb on + strand, within A4249_RS02360 at 501.602 kb on - strand, within A4249_RS02360 at 501.665 kb on + strand, within A4249_RS02360 at 501.665 kb on + strand, within A4249_RS02360 at 501.666 kb on - strand, within A4249_RS02360 at 501.666 kb on - strand, within A4249_RS02360 at 501.685 kb on + strand, within A4249_RS02360 at 501.685 kb on + strand, within A4249_RS02360 at 501.685 kb on + strand, within A4249_RS02360 at 501.685 kb on + strand, within A4249_RS02360 at 501.685 kb on + strand, within A4249_RS02360 at 501.685 kb on + strand, within A4249_RS02360 at 501.685 kb on + strand, within A4249_RS02360 at 501.685 kb on + strand, within A4249_RS02360 at 501.685 kb on + strand, within A4249_RS02360 at 501.685 kb on + strand, within A4249_RS02360 at 501.685 kb on + strand, within A4249_RS02360 at 501.686 kb on - strand, within A4249_RS02360 at 501.686 kb on - strand, within A4249_RS02360 at 501.686 kb on - strand, within A4249_RS02360 at 501.686 kb on - strand, within A4249_RS02360 at 501.686 kb on - strand, within A4249_RS02360 at 501.686 kb on - strand, within A4249_RS02360 at 501.686 kb on - strand, within A4249_RS02360 at 501.686 kb on - strand, within A4249_RS02360 at 501.686 kb on - strand, within A4249_RS02360
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 499,221 - A4249_RS02350 0.46 +0.2 499,264 + A4249_RS02350 0.49 +0.3 499,264 + A4249_RS02350 0.49 +0.3 499,264 + A4249_RS02350 0.49 +0.3 499,265 - A4249_RS02350 0.49 +0.3 499,265 - A4249_RS02350 0.49 +0.2 499,265 - A4249_RS02350 0.49 -0.2 499,265 - A4249_RS02350 0.49 +0.5 499,265 - A4249_RS02350 0.49 -0.2 499,265 - A4249_RS02350 0.49 +0.4 499,361 + A4249_RS02350 0.55 -1.0 499,361 + A4249_RS02350 0.55 +0.4 499,362 - A4249_RS02350 0.55 -0.0 499,362 - A4249_RS02350 0.55 +0.4 499,362 - A4249_RS02350 0.55 -1.3 499,362 - A4249_RS02350 0.55 -1.6 499,362 - A4249_RS02350 0.55 -0.1 499,362 - A4249_RS02350 0.55 -0.2 499,362 - A4249_RS02350 0.55 -0.1 499,440 + A4249_RS02350 0.60 +0.8 499,440 + A4249_RS02350 0.60 -0.4 499,440 + A4249_RS02350 0.60 +0.9 499,440 + A4249_RS02350 0.60 -0.3 499,441 - A4249_RS02350 0.60 +0.3 499,441 - A4249_RS02350 0.60 +0.3 499,441 - A4249_RS02350 0.60 -0.1 499,441 - A4249_RS02350 0.60 -0.1 499,441 - A4249_RS02350 0.60 -0.1 499,472 + A4249_RS02350 0.62 +0.5 499,473 - A4249_RS02350 0.62 +0.4 499,473 - A4249_RS02350 0.62 -0.7 499,523 - A4249_RS02350 0.65 -0.0 499,523 - A4249_RS02350 0.65 -0.0 499,526 + A4249_RS02350 0.66 -0.2 499,526 + A4249_RS02350 0.66 -0.2 499,526 + A4249_RS02350 0.66 -0.2 499,527 - A4249_RS02350 0.66 +0.4 499,527 - A4249_RS02350 0.66 +0.2 499,527 - A4249_RS02350 0.66 -0.3 499,589 + A4249_RS02350 0.70 +0.3 499,590 - A4249_RS02350 0.70 -1.7 499,612 - A4249_RS02350 0.71 -0.3 499,616 + A4249_RS02350 0.71 +0.5 499,617 - A4249_RS02350 0.71 -1.0 499,624 + A4249_RS02350 0.72 +0.4 499,624 + A4249_RS02350 0.72 -0.0 499,624 + A4249_RS02350 0.72 +0.4 499,625 - A4249_RS02350 0.72 +0.7 499,625 - A4249_RS02350 0.72 +0.7 499,744 + A4249_RS02350 0.80 +0.4 499,744 + A4249_RS02350 0.80 -0.4 499,745 - A4249_RS02350 0.80 -0.2 499,745 - A4249_RS02350 0.80 +0.6 499,745 - A4249_RS02350 0.80 -0.0 499,745 - A4249_RS02350 0.80 -0.2 499,745 - A4249_RS02350 0.80 -1.6 499,824 + A4249_RS02350 0.85 -0.1 499,824 + A4249_RS02350 0.85 -0.4 499,824 + A4249_RS02350 0.85 -0.1 499,825 - A4249_RS02350 0.85 -0.3 499,936 + -0.3 499,936 + -0.1 499,936 + +0.6 499,936 + -0.2 499,936 + -0.4 499,937 - +0.1 499,937 - -0.6 499,937 - +1.2 499,937 - +0.1 499,937 - +1.1 499,988 + -1.0 500,153 - A4249_RS02355 0.12 +0.9 500,153 - A4249_RS02355 0.12 +1.2 500,249 + A4249_RS02355 0.24 -0.6 500,249 + A4249_RS02355 0.24 -0.6 500,250 - A4249_RS02355 0.24 +0.5 500,316 + A4249_RS02355 0.32 +0.3 500,316 + A4249_RS02355 0.32 +0.1 500,316 + A4249_RS02355 0.32 +0.1 500,316 + A4249_RS02355 0.32 -0.0 500,316 + A4249_RS02355 0.32 +0.3 500,316 + A4249_RS02355 0.32 +0.2 500,316 + A4249_RS02355 0.32 -0.0 500,316 + A4249_RS02355 0.32 +1.5 500,316 + A4249_RS02355 0.32 +1.0 500,316 + A4249_RS02355 0.32 +0.1 500,316 + A4249_RS02355 0.32 -0.3 500,316 + A4249_RS02355 0.32 -0.2 500,316 + A4249_RS02355 0.32 -0.7 500,316 + A4249_RS02355 0.32 +0.8 500,316 + A4249_RS02355 0.32 +0.1 500,316 + A4249_RS02355 0.32 +0.3 500,316 + A4249_RS02355 0.32 -0.5 500,316 + A4249_RS02355 0.32 -0.8 500,317 - A4249_RS02355 0.32 -0.1 500,317 - A4249_RS02355 0.32 +0.1 500,317 - A4249_RS02355 0.32 +0.0 500,317 - A4249_RS02355 0.32 +0.8 500,317 - A4249_RS02355 0.32 +0.6 500,317 - A4249_RS02355 0.32 +0.4 500,317 - A4249_RS02355 0.32 +0.1 500,317 - A4249_RS02355 0.32 -0.4 500,317 - A4249_RS02355 0.32 -0.3 500,317 - A4249_RS02355 0.32 +0.0 500,317 - A4249_RS02355 0.32 +0.4 500,317 - A4249_RS02355 0.32 -0.4 500,317 - A4249_RS02355 0.32 +0.9 500,468 + A4249_RS02355 0.51 +0.2 500,469 - A4249_RS02355 0.51 +0.4 500,505 + A4249_RS02355 0.56 +1.2 500,505 + A4249_RS02355 0.56 +0.2 500,506 - A4249_RS02355 0.56 +0.2 500,506 - A4249_RS02355 0.56 +0.8 500,506 - A4249_RS02355 0.56 +0.0 500,523 + A4249_RS02355 0.58 +0.1 500,523 + A4249_RS02355 0.58 -0.6 500,524 - A4249_RS02355 0.58 -0.6 500,577 + A4249_RS02355 0.65 -0.3 500,804 + +0.2 500,805 - -0.8 500,897 + -0.1 500,897 + -0.1 500,898 - -0.9 500,898 - -0.0 500,915 + +0.1 500,915 + +0.6 500,915 + +1.3 500,916 - +0.4 500,916 - +0.1 500,971 + -0.2 500,971 + -0.5 500,971 + -0.6 500,971 + -0.7 500,971 + +0.2 500,971 + +0.4 500,971 + +1.4 500,971 + +0.6 500,971 + +0.8 500,971 + -0.1 500,972 - -0.0 500,972 - -0.1 500,972 - -0.1 500,972 - -0.1 500,972 - +0.9 500,972 - -0.7 500,972 - -0.2 500,972 - -0.1 500,972 - -0.5 500,972 - -0.1 500,972 - -0.8 500,972 - -0.1 500,972 - -0.7 500,972 - -0.0 500,972 - -0.4 501,001 + -0.0 501,001 + -0.3 501,001 + -0.9 501,001 + -0.5 501,001 + +0.5 501,001 + +0.6 501,001 + -0.4 501,001 + +0.3 501,001 + +0.8 501,001 + -0.4 501,001 + +0.0 501,001 + -1.0 501,002 - -1.6 501,002 - +0.1 501,002 - -0.6 501,002 - +0.2 501,002 - -0.7 501,002 - +0.1 501,142 - A4249_RS02360 0.25 -0.7 501,142 - A4249_RS02360 0.25 -0.1 501,181 + A4249_RS02360 0.29 -0.1 501,211 + A4249_RS02360 0.32 -1.2 501,211 + A4249_RS02360 0.32 +0.3 501,211 + A4249_RS02360 0.32 +0.2 501,211 + A4249_RS02360 0.32 -0.2 501,211 + A4249_RS02360 0.32 +0.4 501,211 + A4249_RS02360 0.32 -0.1 501,211 + A4249_RS02360 0.32 +0.0 501,211 + A4249_RS02360 0.32 -1.8 501,212 - A4249_RS02360 0.32 -0.2 501,238 + A4249_RS02360 0.35 -0.2 501,238 + A4249_RS02360 0.35 +0.1 501,238 + A4249_RS02360 0.35 +0.3 501,239 - A4249_RS02360 0.35 -0.5 501,239 - A4249_RS02360 0.35 +0.1 501,239 - A4249_RS02360 0.35 -0.1 501,322 + A4249_RS02360 0.45 +0.2 501,322 + A4249_RS02360 0.45 -0.2 501,322 + A4249_RS02360 0.45 +0.2 501,322 + A4249_RS02360 0.45 +0.2 501,322 + A4249_RS02360 0.45 +0.6 501,322 + A4249_RS02360 0.45 -0.2 501,322 + A4249_RS02360 0.45 +0.1 501,323 - A4249_RS02360 0.45 -0.0 501,323 - A4249_RS02360 0.45 -1.0 501,323 - A4249_RS02360 0.45 +0.3 501,568 + A4249_RS02360 0.72 +0.0 501,568 + A4249_RS02360 0.72 -1.7 501,568 + A4249_RS02360 0.72 -0.1 501,568 + A4249_RS02360 0.72 -0.6 501,568 + A4249_RS02360 0.72 -0.1 501,569 - A4249_RS02360 0.72 -0.0 501,569 - A4249_RS02360 0.72 -0.6 501,569 - A4249_RS02360 0.72 +0.2 501,569 - A4249_RS02360 0.72 -0.2 501,569 - A4249_RS02360 0.72 +0.5 501,601 + A4249_RS02360 0.76 -0.2 501,602 - A4249_RS02360 0.76 -1.5 501,665 + A4249_RS02360 0.83 +0.2 501,665 + A4249_RS02360 0.83 -0.1 501,666 - A4249_RS02360 0.83 +0.3 501,666 - A4249_RS02360 0.83 +1.4 501,685 + A4249_RS02360 0.85 -0.0 501,685 + A4249_RS02360 0.85 +1.5 501,685 + A4249_RS02360 0.85 -1.0 501,685 + A4249_RS02360 0.85 +0.1 501,685 + A4249_RS02360 0.85 +0.2 501,685 + A4249_RS02360 0.85 +0.6 501,685 + A4249_RS02360 0.85 -0.5 501,685 + A4249_RS02360 0.85 +0.1 501,685 + A4249_RS02360 0.85 -0.6 501,685 + A4249_RS02360 0.85 +0.8 501,685 + A4249_RS02360 0.85 -0.3 501,686 - A4249_RS02360 0.85 -0.4 501,686 - A4249_RS02360 0.85 -0.2 501,686 - A4249_RS02360 0.85 -1.0 501,686 - A4249_RS02360 0.85 -0.4 501,686 - A4249_RS02360 0.85 +0.3 501,686 - A4249_RS02360 0.85 -0.1 501,686 - A4249_RS02360 0.85 +0.9 501,686 - A4249_RS02360 0.85 +1.2 501,686 - A4249_RS02360 0.85 -0.7
Or see this region's nucleotide sequence