Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02180

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02175 and A4249_RS02180 overlap by 4 nucleotidesA4249_RS02180 and A4249_RS02185 are separated by 32 nucleotides A4249_RS02175: A4249_RS02175 - cbb3-type cytochrome c oxidase subunit I, at 456,750 to 459,296 _RS02175 A4249_RS02180: A4249_RS02180 - hypothetical protein, at 459,293 to 459,604 _RS02180 A4249_RS02185: A4249_RS02185 - polysaccharide biosynthesis tyrosine autokinase, at 459,637 to 461,829 _RS02185 Position (kb) 459 460Strain fitness (log2 ratio) -2 -1 0 1 2at 458.359 kb on - strand, within A4249_RS02175at 458.446 kb on - strand, within A4249_RS02175at 458.446 kb on - strand, within A4249_RS02175at 458.517 kb on + strand, within A4249_RS02175at 458.517 kb on + strand, within A4249_RS02175at 458.517 kb on + strand, within A4249_RS02175at 458.517 kb on + strand, within A4249_RS02175at 458.518 kb on - strand, within A4249_RS02175at 458.518 kb on - strand, within A4249_RS02175at 458.518 kb on - strand, within A4249_RS02175at 458.550 kb on + strand, within A4249_RS02175at 458.550 kb on + strand, within A4249_RS02175at 458.550 kb on + strand, within A4249_RS02175at 458.550 kb on + strand, within A4249_RS02175at 458.550 kb on + strand, within A4249_RS02175at 458.550 kb on + strand, within A4249_RS02175at 458.551 kb on - strand, within A4249_RS02175at 458.551 kb on - strand, within A4249_RS02175at 458.551 kb on - strand, within A4249_RS02175at 458.551 kb on - strand, within A4249_RS02175at 458.551 kb on - strand, within A4249_RS02175at 458.607 kb on + strand, within A4249_RS02175at 458.607 kb on + strand, within A4249_RS02175at 458.607 kb on + strand, within A4249_RS02175at 458.643 kb on + strand, within A4249_RS02175at 458.643 kb on + strand, within A4249_RS02175at 458.643 kb on + strand, within A4249_RS02175at 458.643 kb on + strand, within A4249_RS02175at 458.643 kb on + strand, within A4249_RS02175at 458.643 kb on + strand, within A4249_RS02175at 458.644 kb on - strand, within A4249_RS02175at 458.644 kb on - strand, within A4249_RS02175at 458.644 kb on - strand, within A4249_RS02175at 458.644 kb on - strand, within A4249_RS02175at 458.730 kb on + strand, within A4249_RS02175at 458.730 kb on + strand, within A4249_RS02175at 458.730 kb on + strand, within A4249_RS02175at 458.730 kb on + strand, within A4249_RS02175at 458.730 kb on + strand, within A4249_RS02175at 458.730 kb on + strand, within A4249_RS02175at 458.730 kb on + strand, within A4249_RS02175at 458.730 kb on + strand, within A4249_RS02175at 458.731 kb on - strand, within A4249_RS02175at 458.731 kb on - strand, within A4249_RS02175at 458.731 kb on - strand, within A4249_RS02175at 458.731 kb on - strand, within A4249_RS02175at 458.731 kb on - strand, within A4249_RS02175at 458.731 kb on - strand, within A4249_RS02175at 458.820 kb on + strand, within A4249_RS02175at 458.820 kb on + strand, within A4249_RS02175at 458.820 kb on + strand, within A4249_RS02175at 458.821 kb on - strand, within A4249_RS02175at 458.821 kb on - strand, within A4249_RS02175at 458.821 kb on - strand, within A4249_RS02175at 458.821 kb on - strand, within A4249_RS02175at 458.821 kb on - strand, within A4249_RS02175at 458.821 kb on - strand, within A4249_RS02175at 459.093 kb on + strandat 459.093 kb on + strandat 459.093 kb on + strandat 459.094 kb on - strandat 459.094 kb on - strandat 459.094 kb on - strandat 459.094 kb on - strandat 459.356 kb on + strand, within A4249_RS02180at 459.356 kb on + strand, within A4249_RS02180at 459.356 kb on + strand, within A4249_RS02180at 459.356 kb on + strand, within A4249_RS02180at 459.356 kb on + strand, within A4249_RS02180at 459.357 kb on - strand, within A4249_RS02180at 459.357 kb on - strand, within A4249_RS02180at 459.357 kb on - strand, within A4249_RS02180at 459.357 kb on - strand, within A4249_RS02180at 459.357 kb on - strand, within A4249_RS02180at 459.357 kb on - strand, within A4249_RS02180at 459.357 kb on - strand, within A4249_RS02180at 459.357 kb on - strand, within A4249_RS02180at 459.459 kb on + strand, within A4249_RS02180at 459.459 kb on + strand, within A4249_RS02180at 459.460 kb on - strand, within A4249_RS02180at 459.460 kb on - strand, within A4249_RS02180at 459.595 kb on + strandat 459.595 kb on + strandat 459.595 kb on + strandat 459.596 kb on - strandat 459.628 kb on + strandat 459.647 kb on + strandat 459.647 kb on + strandat 459.647 kb on + strandat 459.647 kb on + strandat 459.647 kb on + strandat 459.647 kb on + strandat 459.648 kb on - strandat 459.648 kb on - strandat 459.648 kb on - strandat 459.648 kb on - strandat 459.648 kb on - strandat 459.650 kb on + strandat 459.650 kb on + strandat 459.650 kb on + strandat 459.650 kb on + strandat 459.650 kb on + strandat 459.651 kb on - strandat 459.675 kb on - strandat 459.675 kb on - strandat 459.690 kb on - strandat 459.690 kb on - strandat 459.694 kb on + strandat 459.694 kb on + strandat 459.694 kb on + strandat 459.694 kb on + strandat 459.694 kb on + strandat 459.695 kb on - strandat 459.848 kb on - strandat 459.848 kb on - strandat 460.145 kb on - strand, within A4249_RS02185at 460.185 kb on + strand, within A4249_RS02185at 460.186 kb on - strand, within A4249_RS02185at 460.186 kb on - strand, within A4249_RS02185at 460.186 kb on - strand, within A4249_RS02185at 460.186 kb on - strand, within A4249_RS02185at 460.186 kb on - strand, within A4249_RS02185at 460.186 kb on - strand, within A4249_RS02185

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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458,359 - A4249_RS02175 0.63 +0.5
458,446 - A4249_RS02175 0.67 -0.8
458,446 - A4249_RS02175 0.67 +0.2
458,517 + A4249_RS02175 0.69 -0.6
458,517 + A4249_RS02175 0.69 +0.1
458,517 + A4249_RS02175 0.69 -0.0
458,517 + A4249_RS02175 0.69 +0.3
458,518 - A4249_RS02175 0.69 +0.1
458,518 - A4249_RS02175 0.69 -0.9
458,518 - A4249_RS02175 0.69 +0.1
458,550 + A4249_RS02175 0.71 -1.8
458,550 + A4249_RS02175 0.71 -0.1
458,550 + A4249_RS02175 0.71 +0.9
458,550 + A4249_RS02175 0.71 +0.3
458,550 + A4249_RS02175 0.71 -0.5
458,550 + A4249_RS02175 0.71 -0.9
458,551 - A4249_RS02175 0.71 -0.4
458,551 - A4249_RS02175 0.71 +0.6
458,551 - A4249_RS02175 0.71 +1.2
458,551 - A4249_RS02175 0.71 -0.2
458,551 - A4249_RS02175 0.71 -0.3
458,607 + A4249_RS02175 0.73 -0.9
458,607 + A4249_RS02175 0.73 -0.3
458,607 + A4249_RS02175 0.73 +0.3
458,643 + A4249_RS02175 0.74 +0.3
458,643 + A4249_RS02175 0.74 +0.2
458,643 + A4249_RS02175 0.74 +0.6
458,643 + A4249_RS02175 0.74 +0.4
458,643 + A4249_RS02175 0.74 -0.3
458,643 + A4249_RS02175 0.74 +0.5
458,644 - A4249_RS02175 0.74 +0.9
458,644 - A4249_RS02175 0.74 -1.5
458,644 - A4249_RS02175 0.74 -0.2
458,644 - A4249_RS02175 0.74 +0.1
458,730 + A4249_RS02175 0.78 +0.0
458,730 + A4249_RS02175 0.78 +0.0
458,730 + A4249_RS02175 0.78 -1.0
458,730 + A4249_RS02175 0.78 +0.5
458,730 + A4249_RS02175 0.78 -0.0
458,730 + A4249_RS02175 0.78 -1.0
458,730 + A4249_RS02175 0.78 -0.1
458,730 + A4249_RS02175 0.78 +0.6
458,731 - A4249_RS02175 0.78 +0.0
458,731 - A4249_RS02175 0.78 -0.9
458,731 - A4249_RS02175 0.78 +0.3
458,731 - A4249_RS02175 0.78 +1.1
458,731 - A4249_RS02175 0.78 -0.1
458,731 - A4249_RS02175 0.78 -0.2
458,820 + A4249_RS02175 0.81 +0.8
458,820 + A4249_RS02175 0.81 -0.3
458,820 + A4249_RS02175 0.81 -0.5
458,821 - A4249_RS02175 0.81 -0.1
458,821 - A4249_RS02175 0.81 -0.0
458,821 - A4249_RS02175 0.81 +0.8
458,821 - A4249_RS02175 0.81 +1.0
458,821 - A4249_RS02175 0.81 -1.4
458,821 - A4249_RS02175 0.81 -0.0
459,093 + +2.0
459,093 + +0.2
459,093 + +0.2
459,094 - -0.5
459,094 - +0.1
459,094 - -0.1
459,094 - +0.2
459,356 + A4249_RS02180 0.20 -0.4
459,356 + A4249_RS02180 0.20 -0.2
459,356 + A4249_RS02180 0.20 +0.4
459,356 + A4249_RS02180 0.20 -0.5
459,356 + A4249_RS02180 0.20 -1.7
459,357 - A4249_RS02180 0.21 -0.7
459,357 - A4249_RS02180 0.21 +0.6
459,357 - A4249_RS02180 0.21 -0.2
459,357 - A4249_RS02180 0.21 -1.3
459,357 - A4249_RS02180 0.21 -0.9
459,357 - A4249_RS02180 0.21 -0.6
459,357 - A4249_RS02180 0.21 -0.1
459,357 - A4249_RS02180 0.21 +0.2
459,459 + A4249_RS02180 0.53 -1.6
459,459 + A4249_RS02180 0.53 -0.1
459,460 - A4249_RS02180 0.54 +0.1
459,460 - A4249_RS02180 0.54 +0.3
459,595 + +0.1
459,595 + +0.1
459,595 + +1.1
459,596 - -0.1
459,628 + +0.3
459,647 + -0.3
459,647 + +0.1
459,647 + +0.2
459,647 + +0.1
459,647 + -1.0
459,647 + -2.2
459,648 - +0.3
459,648 - +0.0
459,648 - +0.5
459,648 - +1.1
459,648 - -0.6
459,650 + +0.2
459,650 + -0.3
459,650 + -0.2
459,650 + +0.6
459,650 + +0.4
459,651 - +0.3
459,675 - +0.1
459,675 - -0.0
459,690 - +0.8
459,690 - +0.3
459,694 + +0.2
459,694 + +0.2
459,694 + -0.2
459,694 + +0.2
459,694 + -0.4
459,695 - -0.9
459,848 - +0.1
459,848 - -0.3
460,145 - A4249_RS02185 0.23 -0.1
460,185 + A4249_RS02185 0.25 +1.2
460,186 - A4249_RS02185 0.25 +0.6
460,186 - A4249_RS02185 0.25 -0.3
460,186 - A4249_RS02185 0.25 +0.2
460,186 - A4249_RS02185 0.25 -0.7
460,186 - A4249_RS02185 0.25 -1.0
460,186 - A4249_RS02185 0.25 -0.4

Or see this region's nucleotide sequence