Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02145 and A4249_RS02150 are separated by 103 nucleotides A4249_RS02150 and A4249_RS02155 are separated by 175 nucleotides A4249_RS02155 and A4249_RS16865 overlap by 4 nucleotides
A4249_RS02145: A4249_RS02145 - IS3 family transposase, at 450,901 to 452,090
_RS02145
A4249_RS02150: A4249_RS02150 - LysR substrate-binding domain-containing protein, at 452,194 to 453,156
_RS02150
A4249_RS02155: A4249_RS02155 - cytochrome c oxidase assembly protein, at 453,332 to 453,973
_RS02155
A4249_RS16865: A4249_RS16865 - cytochrome b, at 453,970 to 454,689
_RS16865
Position (kb) 452
453
454 Strain fitness (log2 ratio) -2
-1
0
1 at 452.124 kb on + strand at 452.125 kb on - strand at 452.125 kb on - strand at 452.125 kb on - strand at 452.125 kb on - strand at 452.125 kb on - strand at 452.153 kb on + strand at 452.164 kb on + strand at 452.413 kb on + strand, within A4249_RS02150 at 452.413 kb on + strand, within A4249_RS02150 at 452.413 kb on + strand, within A4249_RS02150 at 452.413 kb on + strand, within A4249_RS02150 at 452.413 kb on + strand, within A4249_RS02150 at 452.414 kb on - strand, within A4249_RS02150 at 452.414 kb on - strand, within A4249_RS02150 at 452.414 kb on - strand, within A4249_RS02150 at 452.414 kb on - strand, within A4249_RS02150 at 452.414 kb on - strand, within A4249_RS02150 at 452.414 kb on - strand, within A4249_RS02150 at 452.604 kb on + strand, within A4249_RS02150 at 452.604 kb on + strand, within A4249_RS02150 at 452.604 kb on + strand, within A4249_RS02150 at 452.605 kb on - strand, within A4249_RS02150 at 452.605 kb on - strand, within A4249_RS02150 at 452.605 kb on - strand, within A4249_RS02150 at 452.605 kb on - strand, within A4249_RS02150 at 452.728 kb on + strand, within A4249_RS02150 at 452.728 kb on + strand, within A4249_RS02150 at 452.728 kb on + strand, within A4249_RS02150 at 452.728 kb on + strand, within A4249_RS02150 at 452.728 kb on + strand, within A4249_RS02150 at 452.728 kb on + strand, within A4249_RS02150 at 452.729 kb on - strand, within A4249_RS02150 at 452.846 kb on - strand, within A4249_RS02150 at 452.846 kb on - strand, within A4249_RS02150 at 453.138 kb on + strand at 453.138 kb on + strand at 453.139 kb on - strand at 453.173 kb on + strand at 453.173 kb on + strand at 453.174 kb on - strand at 453.278 kb on + strand at 453.279 kb on - strand at 453.279 kb on - strand at 453.279 kb on - strand at 453.279 kb on - strand at 453.420 kb on + strand, within A4249_RS02155 at 453.541 kb on + strand, within A4249_RS02155 at 453.542 kb on - strand, within A4249_RS02155 at 453.552 kb on - strand, within A4249_RS02155 at 453.620 kb on + strand, within A4249_RS02155 at 453.620 kb on + strand, within A4249_RS02155 at 453.620 kb on + strand, within A4249_RS02155 at 453.621 kb on - strand, within A4249_RS02155 at 453.621 kb on - strand, within A4249_RS02155 at 453.621 kb on - strand, within A4249_RS02155 at 453.650 kb on + strand, within A4249_RS02155 at 453.650 kb on + strand, within A4249_RS02155 at 453.650 kb on + strand, within A4249_RS02155 at 453.650 kb on + strand, within A4249_RS02155 at 453.650 kb on + strand, within A4249_RS02155 at 453.651 kb on - strand, within A4249_RS02155 at 453.651 kb on - strand, within A4249_RS02155 at 453.651 kb on - strand, within A4249_RS02155 at 453.651 kb on - strand, within A4249_RS02155 at 453.806 kb on + strand, within A4249_RS02155 at 453.807 kb on - strand, within A4249_RS02155 at 453.807 kb on - strand, within A4249_RS02155 at 453.821 kb on + strand, within A4249_RS02155 at 453.821 kb on + strand, within A4249_RS02155 at 453.821 kb on + strand, within A4249_RS02155 at 453.905 kb on + strand, within A4249_RS02155 at 453.905 kb on + strand, within A4249_RS02155 at 453.905 kb on + strand, within A4249_RS02155 at 453.905 kb on + strand, within A4249_RS02155 at 453.905 kb on + strand, within A4249_RS02155 at 453.905 kb on + strand, within A4249_RS02155 at 453.906 kb on - strand, within A4249_RS02155 at 453.906 kb on - strand, within A4249_RS02155 at 453.906 kb on - strand, within A4249_RS02155 at 453.906 kb on - strand, within A4249_RS02155 at 453.906 kb on - strand, within A4249_RS02155 at 453.906 kb on - strand, within A4249_RS02155 at 453.906 kb on - strand, within A4249_RS02155 at 453.906 kb on - strand, within A4249_RS02155 at 454.033 kb on + strand at 454.148 kb on - strand, within A4249_RS16865 at 454.148 kb on - strand, within A4249_RS16865
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 452,124 + +0.8 452,125 - -0.8 452,125 - +0.9 452,125 - -0.6 452,125 - -1.2 452,125 - +0.8 452,153 + -0.8 452,164 + -0.7 452,413 + A4249_RS02150 0.23 +0.1 452,413 + A4249_RS02150 0.23 +0.8 452,413 + A4249_RS02150 0.23 +0.6 452,413 + A4249_RS02150 0.23 -0.6 452,413 + A4249_RS02150 0.23 +0.7 452,414 - A4249_RS02150 0.23 +0.1 452,414 - A4249_RS02150 0.23 +0.5 452,414 - A4249_RS02150 0.23 +0.4 452,414 - A4249_RS02150 0.23 -1.6 452,414 - A4249_RS02150 0.23 +0.2 452,414 - A4249_RS02150 0.23 +0.3 452,604 + A4249_RS02150 0.43 +0.3 452,604 + A4249_RS02150 0.43 -0.4 452,604 + A4249_RS02150 0.43 +0.0 452,605 - A4249_RS02150 0.43 +0.8 452,605 - A4249_RS02150 0.43 -0.1 452,605 - A4249_RS02150 0.43 -1.4 452,605 - A4249_RS02150 0.43 +0.1 452,728 + A4249_RS02150 0.55 +0.8 452,728 + A4249_RS02150 0.55 -0.0 452,728 + A4249_RS02150 0.55 -0.0 452,728 + A4249_RS02150 0.55 +0.4 452,728 + A4249_RS02150 0.55 +0.0 452,728 + A4249_RS02150 0.55 +1.0 452,729 - A4249_RS02150 0.56 -0.5 452,846 - A4249_RS02150 0.68 -1.2 452,846 - A4249_RS02150 0.68 +0.2 453,138 + +0.6 453,138 + +0.9 453,139 - -0.1 453,173 + -0.5 453,173 + +0.1 453,174 - +0.3 453,278 + +0.7 453,279 - -0.0 453,279 - -0.7 453,279 - +0.2 453,279 - -0.4 453,420 + A4249_RS02155 0.14 -0.4 453,541 + A4249_RS02155 0.33 -1.1 453,542 - A4249_RS02155 0.33 -0.3 453,552 - A4249_RS02155 0.34 -0.7 453,620 + A4249_RS02155 0.45 +0.3 453,620 + A4249_RS02155 0.45 -0.5 453,620 + A4249_RS02155 0.45 -0.5 453,621 - A4249_RS02155 0.45 -2.0 453,621 - A4249_RS02155 0.45 +0.2 453,621 - A4249_RS02155 0.45 +1.6 453,650 + A4249_RS02155 0.50 -0.4 453,650 + A4249_RS02155 0.50 -0.0 453,650 + A4249_RS02155 0.50 +0.8 453,650 + A4249_RS02155 0.50 -0.0 453,650 + A4249_RS02155 0.50 -0.1 453,651 - A4249_RS02155 0.50 +0.1 453,651 - A4249_RS02155 0.50 +0.1 453,651 - A4249_RS02155 0.50 -0.2 453,651 - A4249_RS02155 0.50 +0.9 453,806 + A4249_RS02155 0.74 +0.5 453,807 - A4249_RS02155 0.74 -1.2 453,807 - A4249_RS02155 0.74 +0.6 453,821 + A4249_RS02155 0.76 +0.1 453,821 + A4249_RS02155 0.76 -0.2 453,821 + A4249_RS02155 0.76 -1.1 453,905 + A4249_RS02155 0.89 +0.5 453,905 + A4249_RS02155 0.89 -0.2 453,905 + A4249_RS02155 0.89 -0.0 453,905 + A4249_RS02155 0.89 +0.6 453,905 + A4249_RS02155 0.89 -1.0 453,905 + A4249_RS02155 0.89 +0.8 453,906 - A4249_RS02155 0.89 -0.5 453,906 - A4249_RS02155 0.89 +0.2 453,906 - A4249_RS02155 0.89 +0.5 453,906 - A4249_RS02155 0.89 +1.2 453,906 - A4249_RS02155 0.89 -0.9 453,906 - A4249_RS02155 0.89 +0.2 453,906 - A4249_RS02155 0.89 +0.4 453,906 - A4249_RS02155 0.89 +0.1 454,033 + -0.1 454,148 - A4249_RS16865 0.25 +0.1 454,148 - A4249_RS16865 0.25 -0.6
Or see this region's nucleotide sequence