Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02035 and A4249_RS02040 are separated by 70 nucleotides A4249_RS02040 and A4249_RS02045 are separated by 87 nucleotides
A4249_RS02035: A4249_RS02035 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 419,213 to 421,768
_RS02035
A4249_RS02040: A4249_RS02040 - cation:proton antiporter, at 421,839 to 423,089
_RS02040
A4249_RS02045: A4249_RS02045 - cellulase family glycosylhydrolase, at 423,177 to 424,694
_RS02045
Position (kb) 421
422
423
424 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 421.160 kb on + strand, within A4249_RS02035 at 421.160 kb on + strand, within A4249_RS02035 at 421.161 kb on - strand, within A4249_RS02035 at 421.161 kb on - strand, within A4249_RS02035 at 421.161 kb on - strand, within A4249_RS02035 at 421.161 kb on - strand, within A4249_RS02035 at 421.166 kb on + strand, within A4249_RS02035 at 421.178 kb on + strand, within A4249_RS02035 at 421.178 kb on + strand, within A4249_RS02035 at 421.178 kb on + strand, within A4249_RS02035 at 421.178 kb on + strand, within A4249_RS02035 at 421.178 kb on + strand, within A4249_RS02035 at 421.178 kb on + strand, within A4249_RS02035 at 421.179 kb on - strand, within A4249_RS02035 at 421.179 kb on - strand, within A4249_RS02035 at 421.179 kb on - strand, within A4249_RS02035 at 421.179 kb on - strand, within A4249_RS02035 at 421.179 kb on - strand, within A4249_RS02035 at 421.179 kb on - strand, within A4249_RS02035 at 421.179 kb on - strand, within A4249_RS02035 at 421.179 kb on - strand, within A4249_RS02035 at 421.253 kb on + strand, within A4249_RS02035 at 421.253 kb on + strand, within A4249_RS02035 at 421.254 kb on - strand, within A4249_RS02035 at 421.254 kb on - strand, within A4249_RS02035 at 421.254 kb on - strand, within A4249_RS02035 at 421.567 kb on + strand at 421.568 kb on - strand at 421.568 kb on - strand at 421.767 kb on - strand at 421.890 kb on + strand at 421.891 kb on - strand at 422.046 kb on + strand, within A4249_RS02040 at 422.046 kb on + strand, within A4249_RS02040 at 422.046 kb on + strand, within A4249_RS02040 at 422.046 kb on + strand, within A4249_RS02040 at 422.046 kb on + strand, within A4249_RS02040 at 422.046 kb on + strand, within A4249_RS02040 at 422.046 kb on + strand, within A4249_RS02040 at 422.046 kb on + strand, within A4249_RS02040 at 422.046 kb on + strand, within A4249_RS02040 at 422.046 kb on + strand, within A4249_RS02040 at 422.047 kb on - strand, within A4249_RS02040 at 422.047 kb on - strand, within A4249_RS02040 at 422.047 kb on - strand, within A4249_RS02040 at 422.047 kb on - strand, within A4249_RS02040 at 422.047 kb on - strand, within A4249_RS02040 at 422.047 kb on - strand, within A4249_RS02040 at 422.047 kb on - strand, within A4249_RS02040 at 423.087 kb on + strand at 423.087 kb on + strand at 423.088 kb on - strand at 423.176 kb on + strand at 423.176 kb on + strand at 423.176 kb on + strand at 423.177 kb on - strand at 423.177 kb on - strand at 423.177 kb on - strand at 423.282 kb on + strand at 423.282 kb on + strand at 423.282 kb on + strand at 423.283 kb on - strand at 423.354 kb on + strand, within A4249_RS02045 at 423.354 kb on + strand, within A4249_RS02045 at 423.354 kb on + strand, within A4249_RS02045 at 423.354 kb on + strand, within A4249_RS02045 at 423.354 kb on + strand, within A4249_RS02045 at 423.355 kb on - strand, within A4249_RS02045 at 423.366 kb on - strand, within A4249_RS02045 at 423.396 kb on + strand, within A4249_RS02045 at 423.397 kb on - strand, within A4249_RS02045 at 423.423 kb on + strand, within A4249_RS02045 at 423.423 kb on + strand, within A4249_RS02045 at 423.424 kb on - strand, within A4249_RS02045 at 423.450 kb on + strand, within A4249_RS02045 at 423.451 kb on - strand, within A4249_RS02045 at 423.451 kb on - strand, within A4249_RS02045 at 423.540 kb on + strand, within A4249_RS02045 at 423.541 kb on - strand, within A4249_RS02045 at 423.541 kb on - strand, within A4249_RS02045 at 423.541 kb on - strand, within A4249_RS02045 at 423.652 kb on - strand, within A4249_RS02045 at 423.714 kb on + strand, within A4249_RS02045 at 423.715 kb on - strand, within A4249_RS02045 at 423.715 kb on - strand, within A4249_RS02045 at 423.723 kb on + strand, within A4249_RS02045 at 423.723 kb on + strand, within A4249_RS02045 at 423.723 kb on + strand, within A4249_RS02045 at 423.723 kb on + strand, within A4249_RS02045 at 423.726 kb on + strand, within A4249_RS02045 at 423.726 kb on + strand, within A4249_RS02045 at 423.726 kb on + strand, within A4249_RS02045 at 423.726 kb on + strand, within A4249_RS02045 at 423.727 kb on - strand, within A4249_RS02045 at 423.727 kb on - strand, within A4249_RS02045 at 423.727 kb on - strand, within A4249_RS02045 at 423.727 kb on - strand, within A4249_RS02045 at 423.727 kb on - strand, within A4249_RS02045 at 423.727 kb on - strand, within A4249_RS02045 at 423.727 kb on - strand, within A4249_RS02045 at 423.730 kb on + strand, within A4249_RS02045 at 423.730 kb on + strand, within A4249_RS02045 at 423.730 kb on + strand, within A4249_RS02045 at 423.730 kb on + strand, within A4249_RS02045 at 423.731 kb on - strand, within A4249_RS02045 at 423.731 kb on - strand, within A4249_RS02045 at 423.731 kb on - strand, within A4249_RS02045 at 423.731 kb on - strand, within A4249_RS02045 at 423.731 kb on - strand, within A4249_RS02045 at 423.873 kb on + strand, within A4249_RS02045 at 423.873 kb on + strand, within A4249_RS02045 at 423.873 kb on + strand, within A4249_RS02045 at 423.873 kb on + strand, within A4249_RS02045 at 423.873 kb on + strand, within A4249_RS02045 at 423.873 kb on + strand, within A4249_RS02045 at 423.873 kb on + strand, within A4249_RS02045 at 423.873 kb on + strand, within A4249_RS02045 at 423.873 kb on + strand, within A4249_RS02045 at 423.873 kb on + strand, within A4249_RS02045 at 423.873 kb on + strand, within A4249_RS02045 at 423.873 kb on + strand, within A4249_RS02045 at 423.873 kb on + strand, within A4249_RS02045 at 423.873 kb on + strand, within A4249_RS02045 at 423.874 kb on - strand, within A4249_RS02045 at 423.874 kb on - strand, within A4249_RS02045 at 423.874 kb on - strand, within A4249_RS02045 at 423.874 kb on - strand, within A4249_RS02045 at 423.874 kb on - strand, within A4249_RS02045 at 423.874 kb on - strand, within A4249_RS02045 at 423.874 kb on - strand, within A4249_RS02045 at 423.958 kb on + strand, within A4249_RS02045 at 423.958 kb on + strand, within A4249_RS02045 at 423.958 kb on + strand, within A4249_RS02045 at 423.958 kb on + strand, within A4249_RS02045 at 423.958 kb on + strand, within A4249_RS02045 at 423.958 kb on + strand, within A4249_RS02045 at 423.958 kb on + strand, within A4249_RS02045 at 423.958 kb on + strand, within A4249_RS02045 at 423.958 kb on + strand, within A4249_RS02045 at 423.958 kb on + strand, within A4249_RS02045 at 423.959 kb on - strand, within A4249_RS02045 at 423.959 kb on - strand, within A4249_RS02045 at 423.959 kb on - strand, within A4249_RS02045 at 423.959 kb on - strand, within A4249_RS02045 at 423.959 kb on - strand, within A4249_RS02045 at 423.959 kb on - strand, within A4249_RS02045 at 423.959 kb on - strand, within A4249_RS02045 at 423.959 kb on - strand, within A4249_RS02045 at 423.959 kb on - strand, within A4249_RS02045 at 423.959 kb on - strand, within A4249_RS02045 at 424.035 kb on + strand, within A4249_RS02045 at 424.035 kb on + strand, within A4249_RS02045 at 424.036 kb on - strand, within A4249_RS02045 at 424.036 kb on - strand, within A4249_RS02045 at 424.036 kb on - strand, within A4249_RS02045 at 424.036 kb on - strand, within A4249_RS02045 at 424.036 kb on - strand, within A4249_RS02045 at 424.065 kb on + strand, within A4249_RS02045 at 424.066 kb on - strand, within A4249_RS02045 at 424.066 kb on - strand, within A4249_RS02045 at 424.066 kb on - strand, within A4249_RS02045 at 424.066 kb on - strand, within A4249_RS02045 at 424.066 kb on - strand, within A4249_RS02045 at 424.066 kb on - strand, within A4249_RS02045 at 424.080 kb on + strand, within A4249_RS02045 at 424.081 kb on - strand, within A4249_RS02045 at 424.081 kb on - strand, within A4249_RS02045 at 424.081 kb on - strand, within A4249_RS02045 at 424.081 kb on - strand, within A4249_RS02045 at 424.081 kb on - strand, within A4249_RS02045
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 421,160 + A4249_RS02035 0.76 +0.2 421,160 + A4249_RS02035 0.76 -0.2 421,161 - A4249_RS02035 0.76 +0.5 421,161 - A4249_RS02035 0.76 -0.3 421,161 - A4249_RS02035 0.76 -0.6 421,161 - A4249_RS02035 0.76 +0.7 421,166 + A4249_RS02035 0.76 +0.3 421,178 + A4249_RS02035 0.77 +0.6 421,178 + A4249_RS02035 0.77 -2.4 421,178 + A4249_RS02035 0.77 +0.1 421,178 + A4249_RS02035 0.77 +0.3 421,178 + A4249_RS02035 0.77 -0.0 421,178 + A4249_RS02035 0.77 +0.6 421,179 - A4249_RS02035 0.77 +0.0 421,179 - A4249_RS02035 0.77 -0.1 421,179 - A4249_RS02035 0.77 +0.1 421,179 - A4249_RS02035 0.77 -0.1 421,179 - A4249_RS02035 0.77 -0.5 421,179 - A4249_RS02035 0.77 -1.2 421,179 - A4249_RS02035 0.77 +0.0 421,179 - A4249_RS02035 0.77 +0.5 421,253 + A4249_RS02035 0.80 -1.7 421,253 + A4249_RS02035 0.80 +0.1 421,254 - A4249_RS02035 0.80 +0.0 421,254 - A4249_RS02035 0.80 -1.0 421,254 - A4249_RS02035 0.80 -1.4 421,567 + +0.4 421,568 - -0.1 421,568 - +0.9 421,767 - -0.4 421,890 + -0.1 421,891 - +0.3 422,046 + A4249_RS02040 0.17 -0.3 422,046 + A4249_RS02040 0.17 +0.0 422,046 + A4249_RS02040 0.17 -0.2 422,046 + A4249_RS02040 0.17 -1.5 422,046 + A4249_RS02040 0.17 -0.2 422,046 + A4249_RS02040 0.17 +0.9 422,046 + A4249_RS02040 0.17 -0.4 422,046 + A4249_RS02040 0.17 +0.1 422,046 + A4249_RS02040 0.17 +0.5 422,046 + A4249_RS02040 0.17 -0.1 422,047 - A4249_RS02040 0.17 -1.2 422,047 - A4249_RS02040 0.17 +0.2 422,047 - A4249_RS02040 0.17 -0.1 422,047 - A4249_RS02040 0.17 -0.4 422,047 - A4249_RS02040 0.17 +0.7 422,047 - A4249_RS02040 0.17 -0.8 422,047 - A4249_RS02040 0.17 -0.2 423,087 + -1.1 423,087 + -0.5 423,088 - -0.4 423,176 + +0.5 423,176 + -0.3 423,176 + +0.5 423,177 - +0.2 423,177 - -0.0 423,177 - -0.7 423,282 + -0.0 423,282 + -0.2 423,282 + -0.5 423,283 - -0.2 423,354 + A4249_RS02045 0.12 +0.3 423,354 + A4249_RS02045 0.12 -0.7 423,354 + A4249_RS02045 0.12 -1.4 423,354 + A4249_RS02045 0.12 -0.3 423,354 + A4249_RS02045 0.12 +0.1 423,355 - A4249_RS02045 0.12 +0.1 423,366 - A4249_RS02045 0.12 +0.1 423,396 + A4249_RS02045 0.14 -0.7 423,397 - A4249_RS02045 0.14 +0.6 423,423 + A4249_RS02045 0.16 -0.1 423,423 + A4249_RS02045 0.16 +0.4 423,424 - A4249_RS02045 0.16 -0.1 423,450 + A4249_RS02045 0.18 -1.8 423,451 - A4249_RS02045 0.18 -0.2 423,451 - A4249_RS02045 0.18 +0.8 423,540 + A4249_RS02045 0.24 +0.4 423,541 - A4249_RS02045 0.24 +0.5 423,541 - A4249_RS02045 0.24 -0.5 423,541 - A4249_RS02045 0.24 -0.4 423,652 - A4249_RS02045 0.31 +0.3 423,714 + A4249_RS02045 0.35 +0.2 423,715 - A4249_RS02045 0.35 -0.1 423,715 - A4249_RS02045 0.35 +0.6 423,723 + A4249_RS02045 0.36 -0.1 423,723 + A4249_RS02045 0.36 +0.4 423,723 + A4249_RS02045 0.36 -0.6 423,723 + A4249_RS02045 0.36 -0.6 423,726 + A4249_RS02045 0.36 -2.8 423,726 + A4249_RS02045 0.36 +0.2 423,726 + A4249_RS02045 0.36 -0.9 423,726 + A4249_RS02045 0.36 +0.2 423,727 - A4249_RS02045 0.36 +0.0 423,727 - A4249_RS02045 0.36 +0.4 423,727 - A4249_RS02045 0.36 -0.5 423,727 - A4249_RS02045 0.36 +0.2 423,727 - A4249_RS02045 0.36 +0.8 423,727 - A4249_RS02045 0.36 -0.2 423,727 - A4249_RS02045 0.36 -0.1 423,730 + A4249_RS02045 0.36 -0.2 423,730 + A4249_RS02045 0.36 +0.5 423,730 + A4249_RS02045 0.36 +1.0 423,730 + A4249_RS02045 0.36 +0.1 423,731 - A4249_RS02045 0.36 -2.0 423,731 - A4249_RS02045 0.36 +0.7 423,731 - A4249_RS02045 0.36 -0.6 423,731 - A4249_RS02045 0.36 +0.4 423,731 - A4249_RS02045 0.36 -0.0 423,873 + A4249_RS02045 0.46 +0.9 423,873 + A4249_RS02045 0.46 +0.0 423,873 + A4249_RS02045 0.46 +0.8 423,873 + A4249_RS02045 0.46 +0.8 423,873 + A4249_RS02045 0.46 -0.8 423,873 + A4249_RS02045 0.46 +0.1 423,873 + A4249_RS02045 0.46 +0.3 423,873 + A4249_RS02045 0.46 +0.9 423,873 + A4249_RS02045 0.46 -0.3 423,873 + A4249_RS02045 0.46 +0.1 423,873 + A4249_RS02045 0.46 -0.5 423,873 + A4249_RS02045 0.46 -0.6 423,873 + A4249_RS02045 0.46 +0.5 423,873 + A4249_RS02045 0.46 +0.1 423,874 - A4249_RS02045 0.46 -0.6 423,874 - A4249_RS02045 0.46 -0.1 423,874 - A4249_RS02045 0.46 -0.6 423,874 - A4249_RS02045 0.46 -0.6 423,874 - A4249_RS02045 0.46 +0.5 423,874 - A4249_RS02045 0.46 +0.4 423,874 - A4249_RS02045 0.46 -0.5 423,958 + A4249_RS02045 0.51 +0.4 423,958 + A4249_RS02045 0.51 +0.4 423,958 + A4249_RS02045 0.51 -0.9 423,958 + A4249_RS02045 0.51 +0.7 423,958 + A4249_RS02045 0.51 -0.6 423,958 + A4249_RS02045 0.51 -0.6 423,958 + A4249_RS02045 0.51 +0.3 423,958 + A4249_RS02045 0.51 +0.1 423,958 + A4249_RS02045 0.51 -0.5 423,958 + A4249_RS02045 0.51 +0.6 423,959 - A4249_RS02045 0.52 -1.2 423,959 - A4249_RS02045 0.52 +0.2 423,959 - A4249_RS02045 0.52 -1.0 423,959 - A4249_RS02045 0.52 -1.0 423,959 - A4249_RS02045 0.52 -0.1 423,959 - A4249_RS02045 0.52 +0.0 423,959 - A4249_RS02045 0.52 -0.1 423,959 - A4249_RS02045 0.52 -0.2 423,959 - A4249_RS02045 0.52 -0.1 423,959 - A4249_RS02045 0.52 -0.3 424,035 + A4249_RS02045 0.57 +0.4 424,035 + A4249_RS02045 0.57 +0.1 424,036 - A4249_RS02045 0.57 -0.6 424,036 - A4249_RS02045 0.57 +0.5 424,036 - A4249_RS02045 0.57 +0.8 424,036 - A4249_RS02045 0.57 +0.1 424,036 - A4249_RS02045 0.57 +1.0 424,065 + A4249_RS02045 0.58 +0.2 424,066 - A4249_RS02045 0.59 -1.2 424,066 - A4249_RS02045 0.59 +0.1 424,066 - A4249_RS02045 0.59 +0.2 424,066 - A4249_RS02045 0.59 +0.0 424,066 - A4249_RS02045 0.59 -0.0 424,066 - A4249_RS02045 0.59 +1.0 424,080 + A4249_RS02045 0.59 +0.2 424,081 - A4249_RS02045 0.60 +0.4 424,081 - A4249_RS02045 0.60 -0.5 424,081 - A4249_RS02045 0.60 -1.1 424,081 - A4249_RS02045 0.60 -0.6 424,081 - A4249_RS02045 0.60 +1.2
Or see this region's nucleotide sequence