Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01645

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS01640 and A4249_RS01645 are separated by 9 nucleotidesA4249_RS01645 and A4249_RS16720 are separated by 116 nucleotidesA4249_RS16720 and A4249_RS01650 are separated by 156 nucleotidesA4249_RS01650 and A4249_RS01655 are separated by 75 nucleotides A4249_RS01640: A4249_RS01640 - biotin/lipoyl-binding protein, at 313,068 to 314,072 _RS01640 A4249_RS01645: A4249_RS01645 - crotonase/enoyl-CoA hydratase family protein, at 314,082 to 314,879 _RS01645 A4249_RS16720: A4249_RS16720 - hypothetical protein, at 314,996 to 315,148 _RS16720 A4249_RS01650: A4249_RS01650 - DUF1289 domain-containing protein, at 315,305 to 315,526 _RS01650 A4249_RS01655: A4249_RS01655 - TIGR02281 family clan AA aspartic protease, at 315,602 to 316,117 _RS01655 Position (kb) 314 315Strain fitness (log2 ratio) -2 -1 0 1at 313.216 kb on - strand, within A4249_RS01640at 313.611 kb on + strand, within A4249_RS01640at 313.611 kb on + strand, within A4249_RS01640at 313.611 kb on + strand, within A4249_RS01640at 313.611 kb on + strand, within A4249_RS01640at 313.611 kb on + strand, within A4249_RS01640at 313.611 kb on + strand, within A4249_RS01640at 313.612 kb on - strand, within A4249_RS01640at 313.612 kb on - strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.836 kb on + strand, within A4249_RS01640at 313.837 kb on - strand, within A4249_RS01640at 313.837 kb on - strand, within A4249_RS01640at 313.837 kb on - strand, within A4249_RS01640at 313.837 kb on - strand, within A4249_RS01640at 313.837 kb on - strand, within A4249_RS01640at 313.837 kb on - strand, within A4249_RS01640at 313.837 kb on - strand, within A4249_RS01640at 313.837 kb on - strand, within A4249_RS01640at 313.837 kb on - strand, within A4249_RS01640at 313.837 kb on - strand, within A4249_RS01640at 313.837 kb on - strand, within A4249_RS01640at 313.837 kb on - strand, within A4249_RS01640at 313.837 kb on - strand, within A4249_RS01640at 313.837 kb on - strand, within A4249_RS01640at 313.839 kb on - strand, within A4249_RS01640at 314.070 kb on + strandat 314.070 kb on + strandat 314.070 kb on + strandat 314.070 kb on + strandat 314.070 kb on + strandat 314.070 kb on + strandat 314.070 kb on + strandat 314.071 kb on - strandat 314.071 kb on - strandat 314.071 kb on - strandat 314.071 kb on - strandat 314.071 kb on - strandat 314.071 kb on - strandat 314.071 kb on - strandat 314.071 kb on - strandat 314.118 kb on + strandat 314.118 kb on + strandat 314.118 kb on + strandat 314.118 kb on + strandat 314.119 kb on - strandat 314.241 kb on - strand, within A4249_RS01645at 314.241 kb on - strand, within A4249_RS01645at 314.407 kb on - strand, within A4249_RS01645at 314.532 kb on + strand, within A4249_RS01645at 314.532 kb on + strand, within A4249_RS01645at 314.532 kb on + strand, within A4249_RS01645at 314.533 kb on - strand, within A4249_RS01645at 314.584 kb on + strand, within A4249_RS01645at 314.584 kb on + strand, within A4249_RS01645at 314.584 kb on + strand, within A4249_RS01645at 314.584 kb on + strand, within A4249_RS01645at 314.585 kb on - strand, within A4249_RS01645at 314.585 kb on - strand, within A4249_RS01645at 315.013 kb on + strand, within A4249_RS16720at 315.013 kb on + strand, within A4249_RS16720at 315.013 kb on + strand, within A4249_RS16720at 315.014 kb on - strand, within A4249_RS16720at 315.014 kb on - strand, within A4249_RS16720at 315.014 kb on - strand, within A4249_RS16720at 315.014 kb on - strand, within A4249_RS16720at 315.014 kb on - strand, within A4249_RS16720at 315.015 kb on + strand, within A4249_RS16720at 315.015 kb on + strand, within A4249_RS16720at 315.015 kb on + strand, within A4249_RS16720at 315.016 kb on - strand, within A4249_RS16720at 315.016 kb on - strand, within A4249_RS16720at 315.016 kb on - strand, within A4249_RS16720at 315.020 kb on + strand, within A4249_RS16720at 315.067 kb on + strand, within A4249_RS16720at 315.067 kb on + strand, within A4249_RS16720at 315.067 kb on + strand, within A4249_RS16720at 315.068 kb on - strand, within A4249_RS16720at 315.068 kb on - strand, within A4249_RS16720at 315.130 kb on + strand, within A4249_RS16720at 315.130 kb on + strand, within A4249_RS16720at 315.192 kb on - strandat 315.235 kb on + strandat 315.237 kb on + strandat 315.237 kb on + strandat 315.237 kb on + strandat 315.237 kb on + strandat 315.238 kb on - strandat 315.264 kb on + strandat 315.265 kb on - strandat 315.416 kb on - strand, within A4249_RS01650at 315.416 kb on - strand, within A4249_RS01650at 315.541 kb on + strandat 315.541 kb on + strandat 315.541 kb on + strandat 315.541 kb on + strandat 315.542 kb on - strandat 315.542 kb on - strandat 315.542 kb on - strandat 315.789 kb on - strand, within A4249_RS01655at 315.806 kb on - strand, within A4249_RS01655

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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313,216 - A4249_RS01640 0.15 +0.1
313,611 + A4249_RS01640 0.54 -0.1
313,611 + A4249_RS01640 0.54 +0.1
313,611 + A4249_RS01640 0.54 -0.1
313,611 + A4249_RS01640 0.54 -0.3
313,611 + A4249_RS01640 0.54 +0.8
313,611 + A4249_RS01640 0.54 +0.6
313,612 - A4249_RS01640 0.54 +0.2
313,612 - A4249_RS01640 0.54 +0.1
313,836 + A4249_RS01640 0.76 +0.5
313,836 + A4249_RS01640 0.76 -0.1
313,836 + A4249_RS01640 0.76 +0.4
313,836 + A4249_RS01640 0.76 +0.4
313,836 + A4249_RS01640 0.76 -0.1
313,836 + A4249_RS01640 0.76 +0.2
313,836 + A4249_RS01640 0.76 +0.2
313,836 + A4249_RS01640 0.76 +0.7
313,836 + A4249_RS01640 0.76 +0.4
313,836 + A4249_RS01640 0.76 +0.2
313,836 + A4249_RS01640 0.76 +0.4
313,836 + A4249_RS01640 0.76 +0.1
313,836 + A4249_RS01640 0.76 -0.1
313,836 + A4249_RS01640 0.76 -0.0
313,836 + A4249_RS01640 0.76 +0.2
313,836 + A4249_RS01640 0.76 +0.5
313,836 + A4249_RS01640 0.76 -0.5
313,836 + A4249_RS01640 0.76 +0.9
313,836 + A4249_RS01640 0.76 +0.2
313,837 - A4249_RS01640 0.77 +0.9
313,837 - A4249_RS01640 0.77 +0.1
313,837 - A4249_RS01640 0.77 +0.4
313,837 - A4249_RS01640 0.77 +0.3
313,837 - A4249_RS01640 0.77 -0.8
313,837 - A4249_RS01640 0.77 -0.0
313,837 - A4249_RS01640 0.77 +0.1
313,837 - A4249_RS01640 0.77 +0.2
313,837 - A4249_RS01640 0.77 +0.0
313,837 - A4249_RS01640 0.77 +0.4
313,837 - A4249_RS01640 0.77 -0.2
313,837 - A4249_RS01640 0.77 -0.0
313,837 - A4249_RS01640 0.77 +0.0
313,837 - A4249_RS01640 0.77 -0.8
313,839 - A4249_RS01640 0.77 +0.2
314,070 + -0.3
314,070 + +0.1
314,070 + +0.5
314,070 + -0.1
314,070 + -1.0
314,070 + +0.2
314,070 + -0.2
314,071 - +0.6
314,071 - -0.0
314,071 - -0.2
314,071 - +0.1
314,071 - -0.2
314,071 - -0.3
314,071 - -0.5
314,071 - -0.3
314,118 + -0.8
314,118 + +0.4
314,118 + -0.4
314,118 + +0.4
314,119 - +0.1
314,241 - A4249_RS01645 0.20 -0.9
314,241 - A4249_RS01645 0.20 -0.2
314,407 - A4249_RS01645 0.41 -0.1
314,532 + A4249_RS01645 0.56 +0.4
314,532 + A4249_RS01645 0.56 -0.9
314,532 + A4249_RS01645 0.56 +0.0
314,533 - A4249_RS01645 0.57 -0.2
314,584 + A4249_RS01645 0.63 -0.1
314,584 + A4249_RS01645 0.63 -1.1
314,584 + A4249_RS01645 0.63 -0.9
314,584 + A4249_RS01645 0.63 +0.5
314,585 - A4249_RS01645 0.63 -0.2
314,585 - A4249_RS01645 0.63 -0.9
315,013 + A4249_RS16720 0.11 +0.8
315,013 + A4249_RS16720 0.11 +0.1
315,013 + A4249_RS16720 0.11 -0.6
315,014 - A4249_RS16720 0.12 -0.9
315,014 - A4249_RS16720 0.12 +0.1
315,014 - A4249_RS16720 0.12 -0.1
315,014 - A4249_RS16720 0.12 -0.7
315,014 - A4249_RS16720 0.12 -0.9
315,015 + A4249_RS16720 0.12 +0.3
315,015 + A4249_RS16720 0.12 -0.1
315,015 + A4249_RS16720 0.12 -0.6
315,016 - A4249_RS16720 0.13 +0.2
315,016 - A4249_RS16720 0.13 +0.6
315,016 - A4249_RS16720 0.13 -0.2
315,020 + A4249_RS16720 0.16 -0.1
315,067 + A4249_RS16720 0.46 -0.2
315,067 + A4249_RS16720 0.46 -0.3
315,067 + A4249_RS16720 0.46 +0.4
315,068 - A4249_RS16720 0.47 +0.3
315,068 - A4249_RS16720 0.47 -0.3
315,130 + A4249_RS16720 0.88 +0.0
315,130 + A4249_RS16720 0.88 +0.3
315,192 - +0.5
315,235 + +0.1
315,237 + +0.1
315,237 + -0.1
315,237 + +0.1
315,237 + -0.1
315,238 - -0.0
315,264 + +1.2
315,265 - +0.5
315,416 - A4249_RS01650 0.50 -2.1
315,416 - A4249_RS01650 0.50 -0.1
315,541 + +0.4
315,541 + -0.2
315,541 + -0.8
315,541 + -1.2
315,542 - -0.1
315,542 - +0.1
315,542 - -1.3
315,789 - A4249_RS01655 0.36 -0.6
315,806 - A4249_RS01655 0.40 -0.3

Or see this region's nucleotide sequence