Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lysC and HEPCGN_11695 are separated by 54 nucleotides HEPCGN_11695 and dfsB are separated by 333 nucleotides dfsB and HEPCGN_11705 are separated by 18 nucleotides
HEPCGN_11690: lysC - lysine-sensitive aspartokinase 3, at 1,079,984 to 1,081,333
lysC
HEPCGN_11695: HEPCGN_11695 - DNA-binding protein, at 1,081,388 to 1,081,735
_11695
HEPCGN_11700: dfsB - DUF1706 domain-containing protein, at 1,082,069 to 1,082,587
dfsB
HEPCGN_11705: HEPCGN_11705 - ISL3-like element ISEc53 family transposase, at 1,082,606 to 1,083,826
_11705
Position (kb) 1081
1082 Strain fitness (log2 ratio) -1
0
1
2 at 1080.409 kb on - strand, within lysC at 1080.412 kb on + strand, within lysC at 1080.412 kb on + strand, within lysC at 1080.412 kb on + strand, within lysC at 1080.413 kb on - strand, within lysC at 1080.413 kb on - strand, within lysC at 1080.516 kb on + strand, within lysC at 1080.517 kb on - strand, within lysC at 1080.517 kb on - strand, within lysC at 1080.536 kb on - strand, within lysC at 1080.591 kb on - strand, within lysC at 1080.637 kb on + strand, within lysC at 1080.662 kb on + strand, within lysC at 1080.662 kb on + strand, within lysC at 1080.663 kb on - strand, within lysC at 1080.786 kb on + strand, within lysC at 1080.934 kb on + strand, within lysC at 1080.934 kb on + strand, within lysC at 1080.934 kb on + strand, within lysC at 1080.935 kb on - strand, within lysC at 1080.935 kb on - strand, within lysC at 1081.005 kb on + strand, within lysC at 1081.006 kb on - strand, within lysC at 1081.201 kb on - strand at 1081.201 kb on - strand at 1081.319 kb on - strand at 1081.319 kb on - strand at 1081.396 kb on + strand at 1081.425 kb on - strand, within HEPCGN_11695 at 1081.425 kb on - strand, within HEPCGN_11695 at 1081.442 kb on - strand, within HEPCGN_11695 at 1081.442 kb on - strand, within HEPCGN_11695 at 1081.444 kb on - strand, within HEPCGN_11695 at 1081.467 kb on + strand, within HEPCGN_11695 at 1081.488 kb on + strand, within HEPCGN_11695 at 1081.488 kb on + strand, within HEPCGN_11695 at 1081.493 kb on - strand, within HEPCGN_11695 at 1081.512 kb on + strand, within HEPCGN_11695 at 1081.512 kb on + strand, within HEPCGN_11695 at 1081.564 kb on - strand, within HEPCGN_11695 at 1081.748 kb on + strand at 1081.749 kb on - strand at 1081.749 kb on - strand at 1081.750 kb on + strand at 1081.956 kb on + strand at 1081.966 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 1,080,409 - lysC HEPCGN_11690 0.31 +0.1 1,080,412 + lysC HEPCGN_11690 0.32 -0.3 1,080,412 + lysC HEPCGN_11690 0.32 -0.4 1,080,412 + lysC HEPCGN_11690 0.32 -0.3 1,080,413 - lysC HEPCGN_11690 0.32 +0.1 1,080,413 - lysC HEPCGN_11690 0.32 -0.6 1,080,516 + lysC HEPCGN_11690 0.39 +0.6 1,080,517 - lysC HEPCGN_11690 0.39 -0.3 1,080,517 - lysC HEPCGN_11690 0.39 -0.1 1,080,536 - lysC HEPCGN_11690 0.41 +0.3 1,080,591 - lysC HEPCGN_11690 0.45 -0.2 1,080,637 + lysC HEPCGN_11690 0.48 -0.1 1,080,662 + lysC HEPCGN_11690 0.50 -0.3 1,080,662 + lysC HEPCGN_11690 0.50 +0.4 1,080,663 - lysC HEPCGN_11690 0.50 +0.4 1,080,786 + lysC HEPCGN_11690 0.59 +2.7 1,080,934 + lysC HEPCGN_11690 0.70 -0.9 1,080,934 + lysC HEPCGN_11690 0.70 +0.3 1,080,934 + lysC HEPCGN_11690 0.70 +0.1 1,080,935 - lysC HEPCGN_11690 0.70 -0.7 1,080,935 - lysC HEPCGN_11690 0.70 +0.8 1,081,005 + lysC HEPCGN_11690 0.76 +0.0 1,081,006 - lysC HEPCGN_11690 0.76 -0.1 1,081,201 - +0.6 1,081,201 - +0.6 1,081,319 - +0.1 1,081,319 - -0.3 1,081,396 + -0.5 1,081,425 - HEPCGN_11695 0.11 +1.0 1,081,425 - HEPCGN_11695 0.11 -0.4 1,081,442 - HEPCGN_11695 0.16 +0.1 1,081,442 - HEPCGN_11695 0.16 +0.1 1,081,444 - HEPCGN_11695 0.16 +0.1 1,081,467 + HEPCGN_11695 0.23 -0.4 1,081,488 + HEPCGN_11695 0.29 -0.2 1,081,488 + HEPCGN_11695 0.29 -0.4 1,081,493 - HEPCGN_11695 0.30 +0.9 1,081,512 + HEPCGN_11695 0.36 +0.0 1,081,512 + HEPCGN_11695 0.36 +1.0 1,081,564 - HEPCGN_11695 0.51 +0.0 1,081,748 + -0.1 1,081,749 - +0.2 1,081,749 - +0.5 1,081,750 + +0.7 1,081,956 + +0.0 1,081,966 - -0.2
Or see this region's nucleotide sequence