Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bsmA and yjfN are separated by 148 nucleotides yjfN and aidB are separated by 116 nucleotides aidB and yjfC are separated by 83 nucleotides
HEPCGN_10400: bsmA - biofilm peroxide resistance protein BsmA, at 823,290 to 823,619
bsmA
HEPCGN_10405: yjfN - protease activator YjfN, at 823,768 to 824,043
yjfN
HEPCGN_10410: aidB - isovaleryl-CoA dehydrogenase, at 824,160 to 825,785
aidB
HEPCGN_10415: yjfC - Putative acid--amine ligase YjfC, at 825,869 to 827,032
yjfC
Position (kb) 824
825
826 Strain fitness (log2 ratio) -2
-1
0
1
2 at 823.174 kb on + strand at 823.174 kb on + strand at 823.175 kb on - strand at 823.182 kb on - strand at 823.182 kb on - strand at 823.273 kb on + strand at 823.276 kb on + strand at 823.276 kb on + strand at 823.277 kb on - strand at 823.284 kb on + strand at 823.284 kb on + strand at 823.284 kb on + strand at 823.285 kb on - strand at 823.285 kb on - strand at 823.289 kb on + strand at 823.289 kb on + strand at 823.307 kb on + strand at 823.307 kb on + strand at 823.308 kb on - strand at 823.310 kb on + strand at 823.311 kb on - strand at 823.317 kb on - strand at 823.336 kb on + strand, within bsmA at 823.354 kb on + strand, within bsmA at 823.379 kb on + strand, within bsmA at 823.380 kb on - strand, within bsmA at 823.457 kb on - strand, within bsmA at 823.460 kb on + strand, within bsmA at 823.466 kb on - strand, within bsmA at 823.542 kb on + strand, within bsmA at 823.545 kb on + strand, within bsmA at 823.545 kb on + strand, within bsmA at 823.545 kb on + strand, within bsmA at 823.613 kb on + strand at 823.617 kb on + strand at 823.631 kb on + strand at 823.631 kb on + strand at 823.631 kb on + strand at 823.631 kb on + strand at 823.631 kb on + strand at 823.632 kb on - strand at 823.632 kb on - strand at 823.635 kb on + strand at 823.636 kb on - strand at 823.636 kb on - strand at 823.646 kb on - strand at 823.646 kb on - strand at 823.664 kb on - strand at 823.684 kb on + strand at 823.685 kb on - strand at 823.779 kb on - strand at 823.779 kb on - strand at 823.803 kb on - strand, within yjfN at 823.881 kb on - strand, within yjfN at 823.881 kb on - strand, within yjfN at 823.981 kb on - strand, within yjfN at 823.981 kb on - strand, within yjfN at 823.990 kb on + strand, within yjfN at 823.991 kb on - strand, within yjfN at 824.035 kb on + strand at 824.036 kb on - strand at 824.046 kb on - strand at 824.046 kb on - strand at 824.123 kb on - strand at 824.153 kb on + strand at 824.155 kb on + strand at 824.161 kb on + strand at 824.193 kb on + strand at 824.193 kb on + strand at 824.242 kb on - strand at 824.242 kb on - strand at 824.242 kb on - strand at 824.285 kb on - strand at 824.285 kb on - strand at 824.285 kb on - strand at 824.319 kb on + strand at 824.320 kb on - strand at 824.320 kb on - strand at 824.331 kb on - strand, within aidB at 824.442 kb on + strand, within aidB at 824.443 kb on - strand, within aidB at 824.443 kb on - strand, within aidB at 824.443 kb on - strand, within aidB at 824.449 kb on + strand, within aidB at 824.449 kb on + strand, within aidB at 824.450 kb on - strand, within aidB at 824.452 kb on - strand, within aidB at 824.452 kb on - strand, within aidB at 824.452 kb on - strand, within aidB at 824.481 kb on + strand, within aidB at 824.482 kb on - strand, within aidB at 824.496 kb on - strand, within aidB at 824.496 kb on - strand, within aidB at 824.498 kb on + strand, within aidB at 824.499 kb on - strand, within aidB at 824.499 kb on - strand, within aidB at 824.572 kb on + strand, within aidB at 824.619 kb on - strand, within aidB at 824.659 kb on - strand, within aidB at 824.763 kb on + strand, within aidB at 824.778 kb on - strand, within aidB at 824.778 kb on - strand, within aidB at 824.778 kb on - strand, within aidB at 825.008 kb on + strand, within aidB at 825.009 kb on - strand, within aidB at 825.147 kb on - strand, within aidB at 825.147 kb on - strand, within aidB at 825.279 kb on + strand, within aidB at 825.390 kb on + strand, within aidB at 825.391 kb on - strand, within aidB at 825.391 kb on - strand, within aidB at 825.423 kb on - strand, within aidB at 825.501 kb on + strand, within aidB at 825.637 kb on - strand at 825.726 kb on + strand at 825.742 kb on - strand at 825.817 kb on + strand at 825.818 kb on - strand at 825.818 kb on - strand at 825.820 kb on + strand at 825.883 kb on - strand at 825.883 kb on - strand at 825.883 kb on - strand at 825.988 kb on - strand, within yjfC at 825.988 kb on - strand, within yjfC at 826.026 kb on + strand, within yjfC at 826.027 kb on - strand, within yjfC at 826.119 kb on + strand, within yjfC at 826.137 kb on + strand, within yjfC at 826.137 kb on + strand, within yjfC at 826.137 kb on + strand, within yjfC at 826.137 kb on + strand, within yjfC at 826.138 kb on - strand, within yjfC at 826.345 kb on + strand, within yjfC at 826.346 kb on - strand, within yjfC at 826.468 kb on - strand, within yjfC at 826.533 kb on + strand, within yjfC at 826.534 kb on - strand, within yjfC at 826.543 kb on + strand, within yjfC at 826.657 kb on - strand, within yjfC at 826.683 kb on + strand, within yjfC at 826.684 kb on - strand, within yjfC at 826.709 kb on - strand, within yjfC at 826.737 kb on + strand, within yjfC at 826.785 kb on + strand, within yjfC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 823,174 + -0.5 823,174 + -0.7 823,175 - +0.1 823,182 - +0.5 823,182 - +0.1 823,273 + -0.1 823,276 + +1.3 823,276 + +0.6 823,277 - -0.5 823,284 + +0.8 823,284 + +0.1 823,284 + -0.5 823,285 - +0.0 823,285 - +0.5 823,289 + -0.5 823,289 + -0.3 823,307 + +0.6 823,307 + -0.2 823,308 - -0.5 823,310 + +0.5 823,311 - +0.2 823,317 - +0.6 823,336 + bsmA HEPCGN_10400 0.14 +0.6 823,354 + bsmA HEPCGN_10400 0.19 +0.9 823,379 + bsmA HEPCGN_10400 0.27 -0.1 823,380 - bsmA HEPCGN_10400 0.27 -0.2 823,457 - bsmA HEPCGN_10400 0.51 +0.5 823,460 + bsmA HEPCGN_10400 0.52 +0.1 823,466 - bsmA HEPCGN_10400 0.53 +0.2 823,542 + bsmA HEPCGN_10400 0.76 +0.3 823,545 + bsmA HEPCGN_10400 0.77 +0.4 823,545 + bsmA HEPCGN_10400 0.77 +0.4 823,545 + bsmA HEPCGN_10400 0.77 -1.1 823,613 + +0.1 823,617 + -1.9 823,631 + +0.2 823,631 + -0.2 823,631 + +0.3 823,631 + +1.0 823,631 + +0.4 823,632 - +0.6 823,632 - +0.2 823,635 + +0.0 823,636 - +1.4 823,636 - +0.4 823,646 - -0.3 823,646 - -0.2 823,664 - +0.1 823,684 + -0.1 823,685 - +0.3 823,779 - +0.6 823,779 - -0.5 823,803 - yjfN HEPCGN_10405 0.13 +0.3 823,881 - yjfN HEPCGN_10405 0.41 -0.6 823,881 - yjfN HEPCGN_10405 0.41 +0.2 823,981 - yjfN HEPCGN_10405 0.77 +1.3 823,981 - yjfN HEPCGN_10405 0.77 +0.4 823,990 + yjfN HEPCGN_10405 0.80 +0.3 823,991 - yjfN HEPCGN_10405 0.81 +0.5 824,035 + -0.0 824,036 - +0.7 824,046 - +0.2 824,046 - +0.1 824,123 - -0.7 824,153 + +0.4 824,155 + -0.4 824,161 + -0.3 824,193 + +0.3 824,193 + +0.2 824,242 - +0.3 824,242 - +0.9 824,242 - -0.2 824,285 - -0.2 824,285 - +1.6 824,285 - +0.3 824,319 + -0.5 824,320 - -0.7 824,320 - -0.2 824,331 - aidB HEPCGN_10410 0.11 -0.2 824,442 + aidB HEPCGN_10410 0.17 -1.4 824,443 - aidB HEPCGN_10410 0.17 -0.0 824,443 - aidB HEPCGN_10410 0.17 +0.0 824,443 - aidB HEPCGN_10410 0.17 +0.1 824,449 + aidB HEPCGN_10410 0.18 +0.5 824,449 + aidB HEPCGN_10410 0.18 +0.4 824,450 - aidB HEPCGN_10410 0.18 -0.7 824,452 - aidB HEPCGN_10410 0.18 -1.1 824,452 - aidB HEPCGN_10410 0.18 +0.3 824,452 - aidB HEPCGN_10410 0.18 +0.1 824,481 + aidB HEPCGN_10410 0.20 -0.4 824,482 - aidB HEPCGN_10410 0.20 -0.5 824,496 - aidB HEPCGN_10410 0.21 -1.5 824,496 - aidB HEPCGN_10410 0.21 +0.3 824,498 + aidB HEPCGN_10410 0.21 -0.6 824,499 - aidB HEPCGN_10410 0.21 -0.6 824,499 - aidB HEPCGN_10410 0.21 -0.1 824,572 + aidB HEPCGN_10410 0.25 +0.5 824,619 - aidB HEPCGN_10410 0.28 +0.6 824,659 - aidB HEPCGN_10410 0.31 +0.2 824,763 + aidB HEPCGN_10410 0.37 -0.6 824,778 - aidB HEPCGN_10410 0.38 +0.2 824,778 - aidB HEPCGN_10410 0.38 +0.0 824,778 - aidB HEPCGN_10410 0.38 +0.8 825,008 + aidB HEPCGN_10410 0.52 +0.0 825,009 - aidB HEPCGN_10410 0.52 -0.1 825,147 - aidB HEPCGN_10410 0.61 +1.9 825,147 - aidB HEPCGN_10410 0.61 -1.1 825,279 + aidB HEPCGN_10410 0.69 -0.9 825,390 + aidB HEPCGN_10410 0.76 +0.0 825,391 - aidB HEPCGN_10410 0.76 -0.9 825,391 - aidB HEPCGN_10410 0.76 -0.7 825,423 - aidB HEPCGN_10410 0.78 -1.0 825,501 + aidB HEPCGN_10410 0.82 -0.5 825,637 - -0.6 825,726 + +0.1 825,742 - +0.1 825,817 + +1.4 825,818 - -0.3 825,818 - +0.1 825,820 + -0.1 825,883 - +0.9 825,883 - +0.8 825,883 - -0.3 825,988 - yjfC HEPCGN_10415 0.10 -0.2 825,988 - yjfC HEPCGN_10415 0.10 -0.3 826,026 + yjfC HEPCGN_10415 0.13 +0.6 826,027 - yjfC HEPCGN_10415 0.14 +0.5 826,119 + yjfC HEPCGN_10415 0.21 +0.4 826,137 + yjfC HEPCGN_10415 0.23 +0.7 826,137 + yjfC HEPCGN_10415 0.23 -1.6 826,137 + yjfC HEPCGN_10415 0.23 +0.1 826,137 + yjfC HEPCGN_10415 0.23 -1.7 826,138 - yjfC HEPCGN_10415 0.23 +0.3 826,345 + yjfC HEPCGN_10415 0.41 +0.5 826,346 - yjfC HEPCGN_10415 0.41 -0.4 826,468 - yjfC HEPCGN_10415 0.51 -0.8 826,533 + yjfC HEPCGN_10415 0.57 +0.2 826,534 - yjfC HEPCGN_10415 0.57 +0.0 826,543 + yjfC HEPCGN_10415 0.58 +0.8 826,657 - yjfC HEPCGN_10415 0.68 -0.4 826,683 + yjfC HEPCGN_10415 0.70 -0.8 826,684 - yjfC HEPCGN_10415 0.70 +0.0 826,709 - yjfC HEPCGN_10415 0.72 -2.3 826,737 + yjfC HEPCGN_10415 0.75 +0.3 826,785 + yjfC HEPCGN_10415 0.79 +0.4
Or see this region's nucleotide sequence