Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thrA and HEPCGN_09120 are separated by 80 nucleotides HEPCGN_09120 and lasT are separated by 213 nucleotides lasT and arcA are separated by 635 nucleotides
HEPCGN_09115: thrA - bifunctional aspartate kinase/homoserine dehydrogenase I, at 569,825 to 572,287
thrA
HEPCGN_09120: HEPCGN_09120 - thr operon leader peptide, at 572,368 to 572,433
_09120
HEPCGN_09125: lasT - tRNA/rRNA methyltransferase, at 572,647 to 573,333
lasT
HEPCGN_09130: arcA - two-component system response regulator ArcA, at 573,969 to 574,685
arcA
Position (kb) 572
573
574 Strain fitness (log2 ratio) -2
-1
0
1 at 571.663 kb on - strand, within thrA at 571.799 kb on - strand, within thrA at 571.853 kb on - strand, within thrA at 571.888 kb on + strand, within thrA at 571.963 kb on + strand, within thrA at 571.963 kb on + strand, within thrA at 571.963 kb on + strand, within thrA at 571.963 kb on + strand, within thrA at 571.964 kb on - strand, within thrA at 571.985 kb on + strand, within thrA at 571.985 kb on + strand, within thrA at 571.986 kb on - strand, within thrA at 572.263 kb on + strand at 572.264 kb on - strand at 572.294 kb on + strand at 572.294 kb on + strand at 572.382 kb on + strand, within HEPCGN_09120 at 572.410 kb on - strand, within HEPCGN_09120 at 572.422 kb on - strand, within HEPCGN_09120 at 572.422 kb on - strand, within HEPCGN_09120 at 572.473 kb on + strand at 572.479 kb on + strand at 572.479 kb on + strand at 572.480 kb on - strand at 572.482 kb on - strand at 572.497 kb on + strand at 572.505 kb on + strand at 572.526 kb on + strand at 572.593 kb on + strand at 572.593 kb on + strand at 572.594 kb on - strand at 572.594 kb on - strand at 572.594 kb on - strand at 572.634 kb on - strand at 572.671 kb on - strand at 572.671 kb on - strand at 572.713 kb on + strand at 572.858 kb on - strand, within lasT at 572.869 kb on + strand, within lasT at 572.882 kb on + strand, within lasT at 572.883 kb on - strand, within lasT at 572.883 kb on - strand, within lasT at 572.943 kb on + strand, within lasT at 572.962 kb on + strand, within lasT at 573.081 kb on - strand, within lasT at 573.081 kb on - strand, within lasT at 573.328 kb on - strand at 573.333 kb on + strand at 573.334 kb on - strand at 573.577 kb on + strand at 573.584 kb on - strand at 573.594 kb on + strand at 573.634 kb on - strand at 573.667 kb on + strand at 573.682 kb on + strand at 573.683 kb on - strand at 573.684 kb on + strand at 573.684 kb on + strand at 573.685 kb on - strand at 573.735 kb on - strand at 573.813 kb on + strand at 573.813 kb on + strand at 573.859 kb on - strand at 573.862 kb on + strand at 573.867 kb on + strand at 573.868 kb on - strand at 573.868 kb on - strand at 573.928 kb on + strand at 573.957 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 571,663 - thrA HEPCGN_09115 0.75 -0.2 571,799 - thrA HEPCGN_09115 0.80 -0.5 571,853 - thrA HEPCGN_09115 0.82 -0.5 571,888 + thrA HEPCGN_09115 0.84 -1.7 571,963 + thrA HEPCGN_09115 0.87 +0.1 571,963 + thrA HEPCGN_09115 0.87 -0.7 571,963 + thrA HEPCGN_09115 0.87 +0.7 571,963 + thrA HEPCGN_09115 0.87 +0.3 571,964 - thrA HEPCGN_09115 0.87 +0.2 571,985 + thrA HEPCGN_09115 0.88 -2.0 571,985 + thrA HEPCGN_09115 0.88 +0.3 571,986 - thrA HEPCGN_09115 0.88 +0.5 572,263 + -0.1 572,264 - -0.6 572,294 + -0.9 572,294 + +0.4 572,382 + HEPCGN_09120 0.21 +0.6 572,410 - HEPCGN_09120 0.64 +0.7 572,422 - HEPCGN_09120 0.82 +0.3 572,422 - HEPCGN_09120 0.82 +0.2 572,473 + +0.3 572,479 + -0.4 572,479 + +0.1 572,480 - +0.4 572,482 - -0.4 572,497 + -0.1 572,505 + -0.1 572,526 + -0.5 572,593 + -0.1 572,593 + -0.9 572,594 - -0.6 572,594 - -0.1 572,594 - -1.3 572,634 - -0.0 572,671 - -0.7 572,671 - -0.3 572,713 + +0.3 572,858 - lasT HEPCGN_09125 0.31 +0.5 572,869 + lasT HEPCGN_09125 0.32 -1.1 572,882 + lasT HEPCGN_09125 0.34 -0.8 572,883 - lasT HEPCGN_09125 0.34 +0.0 572,883 - lasT HEPCGN_09125 0.34 +1.1 572,943 + lasT HEPCGN_09125 0.43 -0.1 572,962 + lasT HEPCGN_09125 0.46 +0.2 573,081 - lasT HEPCGN_09125 0.63 +0.2 573,081 - lasT HEPCGN_09125 0.63 +0.3 573,328 - +0.0 573,333 + +0.2 573,334 - +0.1 573,577 + -0.4 573,584 - +0.4 573,594 + +0.7 573,634 - +0.6 573,667 + +1.6 573,682 + +1.4 573,683 - -0.4 573,684 + +0.5 573,684 + +1.0 573,685 - -0.1 573,735 - +0.6 573,813 + -0.1 573,813 + +0.4 573,859 - -1.1 573,862 + +0.1 573,867 + +0.6 573,868 - +0.5 573,868 - -0.5 573,928 + -0.5 573,957 + +0.7
Or see this region's nucleotide sequence