Strain Fitness in Escherichia coli ECOR38 around HEPCGN_08870

Experiment: Bas38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyaaU and fixX are separated by 57 nucleotidesfixX and fixX overlap by 4 nucleotides HEPCGN_08865: yaaU - Putative metabolite transport protein YaaU, at 515,839 to 517,170 yaaU HEPCGN_08870: fixX - ferredoxin-like protein FixX, at 517,228 to 517,515 fixX HEPCGN_08875: fixX - ferredoxin-like protein FixX, at 517,512 to 518,798 fixX Position (kb) 517 518Strain fitness (log2 ratio) -2 -1 0 1at 516.282 kb on + strand, within yaaUat 516.307 kb on - strand, within yaaUat 516.554 kb on - strand, within yaaUat 516.568 kb on + strand, within yaaUat 516.674 kb on + strand, within yaaUat 516.674 kb on + strand, within yaaUat 516.716 kb on + strand, within yaaUat 516.717 kb on - strand, within yaaUat 516.826 kb on - strand, within yaaUat 516.945 kb on + strand, within yaaUat 516.945 kb on + strand, within yaaUat 516.947 kb on + strand, within yaaUat 516.948 kb on - strand, within yaaUat 517.077 kb on - strandat 517.129 kb on - strandat 517.175 kb on + strandat 517.373 kb on + strand, within fixXat 517.373 kb on + strand, within fixXat 517.670 kb on + strand, within fixXat 517.701 kb on + strand, within fixXat 517.712 kb on - strand, within fixXat 517.756 kb on + strand, within fixXat 517.775 kb on + strand, within fixXat 517.862 kb on + strand, within fixXat 517.862 kb on + strand, within fixXat 517.959 kb on + strand, within fixXat 517.972 kb on + strand, within fixXat 517.973 kb on - strand, within fixXat 518.105 kb on + strand, within fixXat 518.105 kb on + strand, within fixXat 518.117 kb on + strand, within fixXat 518.117 kb on + strand, within fixXat 518.226 kb on + strand, within fixXat 518.424 kb on + strand, within fixXat 518.425 kb on - strand, within fixXat 518.492 kb on - strand, within fixX

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
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516,282 + yaaU HEPCGN_08865 0.33 -0.3
516,307 - yaaU HEPCGN_08865 0.35 -0.5
516,554 - yaaU HEPCGN_08865 0.54 -0.3
516,568 + yaaU HEPCGN_08865 0.55 -1.0
516,674 + yaaU HEPCGN_08865 0.63 +0.6
516,674 + yaaU HEPCGN_08865 0.63 +0.5
516,716 + yaaU HEPCGN_08865 0.66 -0.2
516,717 - yaaU HEPCGN_08865 0.66 +0.0
516,826 - yaaU HEPCGN_08865 0.74 -1.0
516,945 + yaaU HEPCGN_08865 0.83 -0.1
516,945 + yaaU HEPCGN_08865 0.83 +0.2
516,947 + yaaU HEPCGN_08865 0.83 +0.5
516,948 - yaaU HEPCGN_08865 0.83 +0.5
517,077 - +0.2
517,129 - -1.4
517,175 + +0.4
517,373 + fixX HEPCGN_08870 0.50 +0.5
517,373 + fixX HEPCGN_08870 0.50 +0.5
517,670 + fixX HEPCGN_08875 0.12 +0.4
517,701 + fixX HEPCGN_08875 0.15 -0.0
517,712 - fixX HEPCGN_08875 0.16 -0.0
517,756 + fixX HEPCGN_08875 0.19 -0.4
517,775 + fixX HEPCGN_08875 0.20 +0.5
517,862 + fixX HEPCGN_08875 0.27 -0.6
517,862 + fixX HEPCGN_08875 0.27 -0.5
517,959 + fixX HEPCGN_08875 0.35 +0.3
517,972 + fixX HEPCGN_08875 0.36 -0.2
517,973 - fixX HEPCGN_08875 0.36 -0.9
518,105 + fixX HEPCGN_08875 0.46 -0.9
518,105 + fixX HEPCGN_08875 0.46 -0.1
518,117 + fixX HEPCGN_08875 0.47 -2.3
518,117 + fixX HEPCGN_08875 0.47 +0.6
518,226 + fixX HEPCGN_08875 0.55 -0.5
518,424 + fixX HEPCGN_08875 0.71 -0.5
518,425 - fixX HEPCGN_08875 0.71 -0.1
518,492 - fixX HEPCGN_08875 0.76 +0.2

Or see this region's nucleotide sequence