Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ykgK,ecpR and HEPCGN_07725 are separated by 74 nucleotides HEPCGN_07725 and ecpA overlap by 4 nucleotides ecpA and ecpB are separated by 57 nucleotides ecpB and ecpC are separated by 25 nucleotides
HEPCGN_07720: ykgK,ecpR - regulator protein EcpR, at 288,059 to 288,601
ykgK,ecpR
HEPCGN_07725: HEPCGN_07725 - Fimbrillin, at 288,676 to 288,816
_07725
HEPCGN_07730: ecpA - Common pilus major fimbrillin subunit EcpA, at 288,813 to 289,262
ecpA
HEPCGN_07735: ecpB - fimbrial chaperone EcpB, at 289,320 to 289,988
ecpB
HEPCGN_07740: ecpC - fimbrial usher EcpC, at 290,014 to 292,539
ecpC
Position (kb) 288
289
290 Strain fitness (log2 ratio) -1
0
1
2 at 288.029 kb on + strand at 288.116 kb on + strand, within ykgK,ecpR at 288.341 kb on - strand, within ykgK,ecpR at 288.356 kb on + strand, within ykgK,ecpR at 288.427 kb on + strand, within ykgK,ecpR at 288.539 kb on + strand, within ykgK,ecpR at 288.582 kb on + strand at 288.583 kb on - strand at 288.616 kb on - strand at 288.858 kb on - strand, within ecpA at 288.866 kb on + strand, within ecpA at 288.927 kb on - strand, within ecpA at 289.005 kb on + strand, within ecpA at 289.082 kb on + strand, within ecpA at 289.083 kb on - strand, within ecpA at 289.102 kb on - strand, within ecpA at 289.235 kb on - strand at 289.260 kb on + strand at 289.274 kb on + strand at 289.363 kb on + strand at 289.364 kb on - strand at 289.395 kb on - strand, within ecpB at 289.396 kb on + strand, within ecpB at 289.397 kb on - strand, within ecpB at 289.397 kb on - strand, within ecpB at 289.608 kb on + strand, within ecpB at 289.638 kb on + strand, within ecpB at 289.639 kb on - strand, within ecpB at 289.641 kb on + strand, within ecpB at 289.767 kb on + strand, within ecpB at 289.768 kb on - strand, within ecpB at 289.768 kb on - strand, within ecpB at 289.802 kb on + strand, within ecpB at 289.834 kb on - strand, within ecpB at 289.872 kb on - strand, within ecpB at 289.967 kb on + strand at 289.986 kb on + strand at 289.987 kb on - strand at 289.991 kb on - strand at 290.021 kb on + strand at 290.108 kb on + strand at 290.108 kb on + strand at 290.109 kb on - strand at 290.109 kb on - strand at 290.123 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 288,029 + +0.1 288,116 + ykgK,ecpR HEPCGN_07720 0.10 +0.2 288,341 - ykgK,ecpR HEPCGN_07720 0.52 -0.0 288,356 + ykgK,ecpR HEPCGN_07720 0.55 -0.7 288,427 + ykgK,ecpR HEPCGN_07720 0.68 -0.8 288,539 + ykgK,ecpR HEPCGN_07720 0.88 -1.4 288,582 + -0.1 288,583 - -0.0 288,616 - -0.3 288,858 - ecpA HEPCGN_07730 0.10 +0.4 288,866 + ecpA HEPCGN_07730 0.12 +0.8 288,927 - ecpA HEPCGN_07730 0.25 +0.1 289,005 + ecpA HEPCGN_07730 0.43 -0.0 289,082 + ecpA HEPCGN_07730 0.60 -0.8 289,083 - ecpA HEPCGN_07730 0.60 -0.1 289,102 - ecpA HEPCGN_07730 0.64 +0.5 289,235 - -1.6 289,260 + +0.2 289,274 + -0.1 289,363 + -0.6 289,364 - +0.6 289,395 - ecpB HEPCGN_07735 0.11 -0.1 289,396 + ecpB HEPCGN_07735 0.11 +0.1 289,397 - ecpB HEPCGN_07735 0.12 +0.2 289,397 - ecpB HEPCGN_07735 0.12 -0.1 289,608 + ecpB HEPCGN_07735 0.43 +0.2 289,638 + ecpB HEPCGN_07735 0.48 +0.8 289,639 - ecpB HEPCGN_07735 0.48 +0.5 289,641 + ecpB HEPCGN_07735 0.48 -0.6 289,767 + ecpB HEPCGN_07735 0.67 +0.0 289,768 - ecpB HEPCGN_07735 0.67 -0.9 289,768 - ecpB HEPCGN_07735 0.67 +0.1 289,802 + ecpB HEPCGN_07735 0.72 -0.2 289,834 - ecpB HEPCGN_07735 0.77 +0.5 289,872 - ecpB HEPCGN_07735 0.83 -0.2 289,967 + +0.4 289,986 + -0.2 289,987 - +0.2 289,991 - -0.2 290,021 + +0.4 290,108 + +0.1 290,108 + +0.4 290,109 - +0.1 290,109 - -0.6 290,123 + +2.4
Or see this region's nucleotide sequence