Strain Fitness in Escherichia coli ECOR38 around HEPCGN_06310

Experiment: Bas38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-ISSd1 and tnp-IS600 are separated by 35 nucleotidestnp-IS600 and HEPCGN_06310 are separated by 130 nucleotidesHEPCGN_06310 and istB are separated by 43 nucleotidesistB and istA overlap by 1 nucleotides HEPCGN_06300: tnp-ISSd1 - IS3 family ISSd1 transposase, at 1,127,816 to 1,128,118 tnp-ISSd1 HEPCGN_06305: tnp-IS600 - IS3 family IS600 transposase, at 1,128,154 to 1,128,972 tnp-IS600 HEPCGN_06310: HEPCGN_06310 - antitermination protein, at 1,129,103 to 1,129,531 _06310 HEPCGN_06315: istB - IS21-like element IS100kyp family helper ATPase IstB, at 1,129,575 to 1,130,354 istB HEPCGN_06320: istA - IS21-like element IS100 family transposase, at 1,130,354 to 1,131,376 istA Position (kb) 1129 1130Strain fitness (log2 ratio) -1 0 1at 1129.026 kb on - strandat 1129.087 kb on - strandat 1129.093 kb on + strandat 1129.206 kb on + strand, within HEPCGN_06310at 1129.307 kb on + strand, within HEPCGN_06310at 1129.327 kb on + strand, within HEPCGN_06310at 1129.364 kb on + strand, within HEPCGN_06310at 1129.365 kb on - strand, within HEPCGN_06310at 1129.367 kb on - strand, within HEPCGN_06310at 1129.367 kb on - strand, within HEPCGN_06310at 1129.367 kb on - strand, within HEPCGN_06310at 1129.371 kb on + strand, within HEPCGN_06310at 1129.440 kb on + strand, within HEPCGN_06310at 1129.492 kb on + strandat 1129.493 kb on - strandat 1129.539 kb on - strandat 1129.539 kb on - strandat 1130.291 kb on + strandat 1130.382 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
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1,129,026 - -0.2
1,129,087 - +0.3
1,129,093 + +0.6
1,129,206 + HEPCGN_06310 0.24 -0.7
1,129,307 + HEPCGN_06310 0.48 +0.4
1,129,327 + HEPCGN_06310 0.52 +0.2
1,129,364 + HEPCGN_06310 0.61 -0.6
1,129,365 - HEPCGN_06310 0.61 -0.7
1,129,367 - HEPCGN_06310 0.62 -0.5
1,129,367 - HEPCGN_06310 0.62 -1.0
1,129,367 - HEPCGN_06310 0.62 -0.9
1,129,371 + HEPCGN_06310 0.62 +0.2
1,129,440 + HEPCGN_06310 0.79 +0.2
1,129,492 + +1.6
1,129,493 - -0.3
1,129,539 - -1.7
1,129,539 - +0.1
1,130,291 + -0.1
1,130,382 + -0.4

Or see this region's nucleotide sequence