Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dgcI and yiaG are separated by 69 nucleotides yiaG and HEPCGN_01965 overlap by 11 nucleotides HEPCGN_01965 and rimO are separated by 225 nucleotides
HEPCGN_01955: dgcI - putative diguanylate cyclase DgcI, at 318,969 to 320,297
dgcI
HEPCGN_01960: yiaG - transcriptional regulator, at 320,367 to 320,696
yiaG
HEPCGN_01965: HEPCGN_01965 - addiction module toxin RelE, at 320,686 to 321,072
_01965
HEPCGN_01970: rimO - 30S ribosomal protein S12 methylthiotransferase RimO, at 321,298 to 322,623
rimO
Position (kb) 320
321
322 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 319.743 kb on - strand, within dgcI at 319.767 kb on - strand, within dgcI at 319.833 kb on + strand, within dgcI at 319.838 kb on + strand, within dgcI at 319.842 kb on + strand, within dgcI at 319.842 kb on + strand, within dgcI at 319.956 kb on - strand, within dgcI at 320.052 kb on - strand, within dgcI at 320.052 kb on - strand, within dgcI at 320.097 kb on + strand, within dgcI at 320.100 kb on - strand, within dgcI at 320.255 kb on + strand at 320.406 kb on - strand, within yiaG at 320.414 kb on + strand, within yiaG at 320.448 kb on - strand, within yiaG at 320.489 kb on + strand, within yiaG at 320.490 kb on - strand, within yiaG at 320.490 kb on - strand, within yiaG at 320.490 kb on - strand, within yiaG at 320.490 kb on - strand, within yiaG at 320.746 kb on - strand, within HEPCGN_01965 at 321.022 kb on - strand, within HEPCGN_01965 at 321.062 kb on + strand at 321.062 kb on + strand at 321.063 kb on - strand at 321.072 kb on + strand at 321.073 kb on - strand at 321.073 kb on - strand at 321.229 kb on - strand at 321.269 kb on + strand at 321.269 kb on + strand at 321.278 kb on + strand at 321.299 kb on + strand at 321.324 kb on - strand at 321.466 kb on - strand, within rimO at 321.618 kb on - strand, within rimO at 321.668 kb on - strand, within rimO at 321.668 kb on - strand, within rimO at 321.781 kb on + strand, within rimO at 321.915 kb on - strand, within rimO at 322.015 kb on - strand, within rimO at 322.038 kb on + strand, within rimO at 322.066 kb on - strand, within rimO
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 319,743 - dgcI HEPCGN_01955 0.58 +0.7 319,767 - dgcI HEPCGN_01955 0.60 -2.2 319,833 + dgcI HEPCGN_01955 0.65 -0.9 319,838 + dgcI HEPCGN_01955 0.65 -0.3 319,842 + dgcI HEPCGN_01955 0.66 +0.5 319,842 + dgcI HEPCGN_01955 0.66 -1.5 319,956 - dgcI HEPCGN_01955 0.74 +0.3 320,052 - dgcI HEPCGN_01955 0.81 -0.2 320,052 - dgcI HEPCGN_01955 0.81 +0.2 320,097 + dgcI HEPCGN_01955 0.85 +0.2 320,100 - dgcI HEPCGN_01955 0.85 +0.1 320,255 + +0.0 320,406 - yiaG HEPCGN_01960 0.12 +0.8 320,414 + yiaG HEPCGN_01960 0.14 -0.9 320,448 - yiaG HEPCGN_01960 0.25 -1.5 320,489 + yiaG HEPCGN_01960 0.37 -0.5 320,490 - yiaG HEPCGN_01960 0.37 -0.3 320,490 - yiaG HEPCGN_01960 0.37 -1.8 320,490 - yiaG HEPCGN_01960 0.37 -0.2 320,490 - yiaG HEPCGN_01960 0.37 -0.2 320,746 - HEPCGN_01965 0.16 -0.7 321,022 - HEPCGN_01965 0.87 -0.4 321,062 + -0.1 321,062 + +0.4 321,063 - +0.4 321,072 + +0.4 321,073 - +0.4 321,073 - -0.2 321,229 - -3.1 321,269 + +0.5 321,269 + +0.9 321,278 + +0.3 321,299 + +0.7 321,324 - +0.7 321,466 - rimO HEPCGN_01970 0.13 -0.0 321,618 - rimO HEPCGN_01970 0.24 -0.3 321,668 - rimO HEPCGN_01970 0.28 -0.6 321,668 - rimO HEPCGN_01970 0.28 -0.0 321,781 + rimO HEPCGN_01970 0.36 +1.3 321,915 - rimO HEPCGN_01970 0.47 +0.6 322,015 - rimO HEPCGN_01970 0.54 +0.2 322,038 + rimO HEPCGN_01970 0.56 -0.6 322,066 - rimO HEPCGN_01970 0.58 -0.2
Or see this region's nucleotide sequence