Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhD and HEPCGN_01610 are separated by 397 nucleotides HEPCGN_01610 and tnp-IS1 are separated by 128 nucleotides tnp-IS1 and acnA are separated by 68 nucleotides acnA and ybhC are separated by 70 nucleotides
HEPCGN_01605: ybhD - Uncharacterized HTH-type transcriptional regulator YbhD, at 243,851 to 244,804
ybhD
HEPCGN_01610: HEPCGN_01610 - HTH-Tnp-IS1 domain-containing protein, at 245,202 to 245,261
_01610
HEPCGN_01615: tnp-IS1 - IS1 family transposase, at 245,390 to 245,683
tnp-IS1
HEPCGN_01620: acnA - hydratase, at 245,752 to 247,776
acnA
HEPCGN_01625: ybhC - putative acyl-CoA thioester hydrolase, at 247,847 to 249,130
ybhC
Position (kb) 245
246
247
248 Strain fitness (log2 ratio) -2
-1
0
1
2 at 244.767 kb on - strand at 244.809 kb on - strand at 244.921 kb on + strand at 244.922 kb on - strand at 245.709 kb on + strand at 245.730 kb on - strand at 245.730 kb on - strand at 245.794 kb on - strand at 245.895 kb on + strand at 245.911 kb on + strand at 245.911 kb on + strand at 245.912 kb on - strand at 245.913 kb on + strand at 245.913 kb on + strand at 245.914 kb on - strand at 245.914 kb on - strand at 246.103 kb on + strand, within acnA at 246.103 kb on + strand, within acnA at 246.104 kb on - strand, within acnA at 246.104 kb on - strand, within acnA at 246.104 kb on - strand, within acnA at 246.104 kb on - strand, within acnA at 246.104 kb on - strand, within acnA at 246.104 kb on - strand, within acnA at 246.297 kb on + strand, within acnA at 246.331 kb on + strand, within acnA at 246.364 kb on + strand, within acnA at 246.440 kb on - strand, within acnA at 246.682 kb on + strand, within acnA at 246.843 kb on + strand, within acnA at 246.951 kb on - strand, within acnA at 246.951 kb on - strand, within acnA at 247.122 kb on + strand, within acnA at 247.123 kb on - strand, within acnA at 247.261 kb on + strand, within acnA at 247.261 kb on + strand, within acnA at 247.275 kb on + strand, within acnA at 247.375 kb on - strand, within acnA at 247.375 kb on - strand, within acnA at 247.501 kb on + strand, within acnA at 247.584 kb on - strand at 247.591 kb on + strand at 247.591 kb on + strand at 247.592 kb on - strand at 247.592 kb on - strand at 247.598 kb on - strand at 247.598 kb on - strand at 247.611 kb on + strand at 247.652 kb on - strand at 247.693 kb on + strand at 247.693 kb on + strand at 247.693 kb on + strand at 247.694 kb on - strand at 247.695 kb on + strand at 247.749 kb on + strand at 247.794 kb on + strand at 247.794 kb on + strand at 247.795 kb on - strand at 247.795 kb on - strand at 247.848 kb on + strand at 247.897 kb on - strand at 247.897 kb on - strand at 247.914 kb on + strand at 247.915 kb on - strand at 247.915 kb on - strand at 248.060 kb on + strand, within ybhC at 248.061 kb on - strand, within ybhC at 248.075 kb on - strand, within ybhC at 248.197 kb on - strand, within ybhC at 248.293 kb on + strand, within ybhC at 248.429 kb on - strand, within ybhC at 248.462 kb on + strand, within ybhC at 248.462 kb on + strand, within ybhC at 248.462 kb on + strand, within ybhC at 248.463 kb on - strand, within ybhC at 248.463 kb on - strand, within ybhC at 248.586 kb on + strand, within ybhC at 248.586 kb on + strand, within ybhC at 248.586 kb on + strand, within ybhC at 248.590 kb on + strand, within ybhC at 248.590 kb on + strand, within ybhC at 248.590 kb on + strand, within ybhC at 248.591 kb on - strand, within ybhC at 248.591 kb on - strand, within ybhC at 248.591 kb on - strand, within ybhC at 248.592 kb on + strand, within ybhC at 248.593 kb on - strand, within ybhC at 248.617 kb on - strand, within ybhC at 248.713 kb on + strand, within ybhC at 248.718 kb on + strand, within ybhC at 248.726 kb on - strand, within ybhC at 248.726 kb on - strand, within ybhC at 248.751 kb on + strand, within ybhC at 248.751 kb on + strand, within ybhC at 248.752 kb on - strand, within ybhC at 248.752 kb on - strand, within ybhC at 248.752 kb on - strand, within ybhC at 248.752 kb on - strand, within ybhC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 244,767 - +0.4 244,809 - -0.1 244,921 + -1.2 244,922 - -0.0 245,709 + +0.5 245,730 - -0.2 245,730 - +0.1 245,794 - +0.2 245,895 + +0.4 245,911 + +0.6 245,911 + -0.2 245,912 - -0.4 245,913 + +0.0 245,913 + +0.3 245,914 - -0.3 245,914 - +0.9 246,103 + acnA HEPCGN_01620 0.17 +0.4 246,103 + acnA HEPCGN_01620 0.17 +1.0 246,104 - acnA HEPCGN_01620 0.17 -1.2 246,104 - acnA HEPCGN_01620 0.17 +0.0 246,104 - acnA HEPCGN_01620 0.17 -0.5 246,104 - acnA HEPCGN_01620 0.17 +0.8 246,104 - acnA HEPCGN_01620 0.17 +0.7 246,104 - acnA HEPCGN_01620 0.17 -1.2 246,297 + acnA HEPCGN_01620 0.27 +0.4 246,331 + acnA HEPCGN_01620 0.29 -0.3 246,364 + acnA HEPCGN_01620 0.30 +0.3 246,440 - acnA HEPCGN_01620 0.34 -0.1 246,682 + acnA HEPCGN_01620 0.46 -0.0 246,843 + acnA HEPCGN_01620 0.54 +0.0 246,951 - acnA HEPCGN_01620 0.59 +0.5 246,951 - acnA HEPCGN_01620 0.59 +1.1 247,122 + acnA HEPCGN_01620 0.68 -0.4 247,123 - acnA HEPCGN_01620 0.68 +0.3 247,261 + acnA HEPCGN_01620 0.75 -1.2 247,261 + acnA HEPCGN_01620 0.75 +0.2 247,275 + acnA HEPCGN_01620 0.75 +0.3 247,375 - acnA HEPCGN_01620 0.80 +0.0 247,375 - acnA HEPCGN_01620 0.80 +0.5 247,501 + acnA HEPCGN_01620 0.86 +0.3 247,584 - +0.2 247,591 + +0.1 247,591 + -0.2 247,592 - +0.3 247,592 - -1.5 247,598 - +0.8 247,598 - -0.5 247,611 + +0.4 247,652 - -1.0 247,693 + +0.2 247,693 + -0.8 247,693 + -0.1 247,694 - +0.0 247,695 + -0.6 247,749 + -0.2 247,794 + +0.4 247,794 + -0.5 247,795 - -0.1 247,795 - -1.6 247,848 + -1.6 247,897 - +0.1 247,897 - +0.7 247,914 + +0.5 247,915 - +0.1 247,915 - +0.6 248,060 + ybhC HEPCGN_01625 0.17 +1.8 248,061 - ybhC HEPCGN_01625 0.17 -0.7 248,075 - ybhC HEPCGN_01625 0.18 +1.1 248,197 - ybhC HEPCGN_01625 0.27 -0.0 248,293 + ybhC HEPCGN_01625 0.35 -0.3 248,429 - ybhC HEPCGN_01625 0.45 +0.6 248,462 + ybhC HEPCGN_01625 0.48 +0.5 248,462 + ybhC HEPCGN_01625 0.48 +0.7 248,462 + ybhC HEPCGN_01625 0.48 -0.1 248,463 - ybhC HEPCGN_01625 0.48 -0.5 248,463 - ybhC HEPCGN_01625 0.48 +0.4 248,586 + ybhC HEPCGN_01625 0.58 -0.1 248,586 + ybhC HEPCGN_01625 0.58 +0.1 248,586 + ybhC HEPCGN_01625 0.58 -1.8 248,590 + ybhC HEPCGN_01625 0.58 +0.3 248,590 + ybhC HEPCGN_01625 0.58 -0.5 248,590 + ybhC HEPCGN_01625 0.58 +0.8 248,591 - ybhC HEPCGN_01625 0.58 +0.7 248,591 - ybhC HEPCGN_01625 0.58 +0.1 248,591 - ybhC HEPCGN_01625 0.58 +0.9 248,592 + ybhC HEPCGN_01625 0.58 +0.3 248,593 - ybhC HEPCGN_01625 0.58 +0.8 248,617 - ybhC HEPCGN_01625 0.60 +0.8 248,713 + ybhC HEPCGN_01625 0.67 +0.2 248,718 + ybhC HEPCGN_01625 0.68 +0.1 248,726 - ybhC HEPCGN_01625 0.68 +0.4 248,726 - ybhC HEPCGN_01625 0.68 +0.8 248,751 + ybhC HEPCGN_01625 0.70 -0.3 248,751 + ybhC HEPCGN_01625 0.70 -0.2 248,752 - ybhC HEPCGN_01625 0.70 -0.2 248,752 - ybhC HEPCGN_01625 0.70 +0.8 248,752 - ybhC HEPCGN_01625 0.70 +0.2 248,752 - ybhC HEPCGN_01625 0.70 -0.1
Or see this region's nucleotide sequence