Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt citC and dpiB are separated by 378 nucleotides dpiB and dpiA overlap by 32 nucleotides dpiA and dcuC are separated by 40 nucleotides
HEPCGN_00830: citC - [citrate (pro-3S)-lyase] ligase, at 94,399 to 95,457
citC
HEPCGN_00835: dpiB - sensor histidine kinase DpiB, at 95,836 to 97,494
dpiB
HEPCGN_00840: dpiA - two-component response regulator DpiA, at 97,463 to 98,143
dpiA
HEPCGN_00845: dcuC - anaerobic C4-dicarboxylate transporter DcuC, at 98,184 to 99,569
dcuC
Position (kb) 95
96
97
98 Strain fitness (log2 ratio) -2
-1
0
1
2 at 94.867 kb on + strand, within citC at 95.172 kb on - strand, within citC at 95.232 kb on + strand, within citC at 95.464 kb on + strand at 95.468 kb on - strand at 95.645 kb on - strand at 95.664 kb on - strand at 95.982 kb on - strand at 95.982 kb on - strand at 96.102 kb on - strand, within dpiB at 96.112 kb on - strand, within dpiB at 96.124 kb on + strand, within dpiB at 96.125 kb on - strand, within dpiB at 96.160 kb on + strand, within dpiB at 96.161 kb on - strand, within dpiB at 96.193 kb on - strand, within dpiB at 96.193 kb on - strand, within dpiB at 96.193 kb on - strand, within dpiB at 96.193 kb on - strand, within dpiB at 96.193 kb on - strand, within dpiB at 96.193 kb on - strand, within dpiB at 96.236 kb on - strand, within dpiB at 96.345 kb on + strand, within dpiB at 96.530 kb on - strand, within dpiB at 96.562 kb on + strand, within dpiB at 96.563 kb on - strand, within dpiB at 96.634 kb on - strand, within dpiB at 96.750 kb on + strand, within dpiB at 96.796 kb on - strand, within dpiB at 96.840 kb on + strand, within dpiB at 96.847 kb on + strand, within dpiB at 96.848 kb on - strand, within dpiB at 96.848 kb on - strand, within dpiB at 96.848 kb on - strand, within dpiB at 96.987 kb on + strand, within dpiB at 97.317 kb on + strand, within dpiB at 97.372 kb on + strand at 97.411 kb on - strand at 97.441 kb on + strand at 97.442 kb on - strand at 97.461 kb on + strand at 97.531 kb on + strand, within dpiA at 97.531 kb on + strand, within dpiA at 97.532 kb on - strand, within dpiA at 97.637 kb on + strand, within dpiA at 97.638 kb on - strand, within dpiA at 97.651 kb on + strand, within dpiA at 97.665 kb on + strand, within dpiA at 97.753 kb on - strand, within dpiA at 97.834 kb on + strand, within dpiA at 97.835 kb on - strand, within dpiA at 97.841 kb on - strand, within dpiA at 97.892 kb on - strand, within dpiA at 97.899 kb on - strand, within dpiA at 97.996 kb on + strand, within dpiA at 97.996 kb on + strand, within dpiA at 98.127 kb on + strand at 98.128 kb on - strand at 98.128 kb on - strand at 98.129 kb on + strand at 98.130 kb on - strand at 98.130 kb on - strand at 98.130 kb on - strand at 98.284 kb on - strand at 98.332 kb on - strand, within dcuC at 98.396 kb on - strand, within dcuC at 98.452 kb on + strand, within dcuC at 98.452 kb on + strand, within dcuC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 94,867 + citC HEPCGN_00830 0.44 -0.1 95,172 - citC HEPCGN_00830 0.73 +0.2 95,232 + citC HEPCGN_00830 0.79 +0.3 95,464 + -0.3 95,468 - +0.6 95,645 - -0.2 95,664 - -1.9 95,982 - -0.8 95,982 - -0.7 96,102 - dpiB HEPCGN_00835 0.16 -0.4 96,112 - dpiB HEPCGN_00835 0.17 +0.9 96,124 + dpiB HEPCGN_00835 0.17 -0.5 96,125 - dpiB HEPCGN_00835 0.17 +0.0 96,160 + dpiB HEPCGN_00835 0.20 +1.0 96,161 - dpiB HEPCGN_00835 0.20 -0.7 96,193 - dpiB HEPCGN_00835 0.22 +0.7 96,193 - dpiB HEPCGN_00835 0.22 +0.4 96,193 - dpiB HEPCGN_00835 0.22 +0.2 96,193 - dpiB HEPCGN_00835 0.22 -0.0 96,193 - dpiB HEPCGN_00835 0.22 +0.4 96,193 - dpiB HEPCGN_00835 0.22 -0.3 96,236 - dpiB HEPCGN_00835 0.24 -0.3 96,345 + dpiB HEPCGN_00835 0.31 -0.4 96,530 - dpiB HEPCGN_00835 0.42 +0.2 96,562 + dpiB HEPCGN_00835 0.44 +0.1 96,563 - dpiB HEPCGN_00835 0.44 -0.1 96,634 - dpiB HEPCGN_00835 0.48 +1.2 96,750 + dpiB HEPCGN_00835 0.55 -0.3 96,796 - dpiB HEPCGN_00835 0.58 -1.7 96,840 + dpiB HEPCGN_00835 0.61 -0.3 96,847 + dpiB HEPCGN_00835 0.61 -0.5 96,848 - dpiB HEPCGN_00835 0.61 +1.2 96,848 - dpiB HEPCGN_00835 0.61 -0.4 96,848 - dpiB HEPCGN_00835 0.61 -0.5 96,987 + dpiB HEPCGN_00835 0.69 -0.1 97,317 + dpiB HEPCGN_00835 0.89 +0.3 97,372 + +0.9 97,411 - +0.3 97,441 + +0.1 97,442 - -2.1 97,461 + +0.2 97,531 + dpiA HEPCGN_00840 0.10 -0.2 97,531 + dpiA HEPCGN_00840 0.10 +0.4 97,532 - dpiA HEPCGN_00840 0.10 +0.3 97,637 + dpiA HEPCGN_00840 0.26 +0.5 97,638 - dpiA HEPCGN_00840 0.26 +1.5 97,651 + dpiA HEPCGN_00840 0.28 +0.8 97,665 + dpiA HEPCGN_00840 0.30 +0.6 97,753 - dpiA HEPCGN_00840 0.43 +0.7 97,834 + dpiA HEPCGN_00840 0.54 -0.2 97,835 - dpiA HEPCGN_00840 0.55 +2.7 97,841 - dpiA HEPCGN_00840 0.56 -0.8 97,892 - dpiA HEPCGN_00840 0.63 +0.2 97,899 - dpiA HEPCGN_00840 0.64 +0.9 97,996 + dpiA HEPCGN_00840 0.78 +0.4 97,996 + dpiA HEPCGN_00840 0.78 +0.2 98,127 + +0.7 98,128 - -0.1 98,128 - -0.0 98,129 + -0.4 98,130 - +0.2 98,130 - +0.8 98,130 - -0.5 98,284 - +0.4 98,332 - dcuC HEPCGN_00845 0.11 +0.2 98,396 - dcuC HEPCGN_00845 0.15 +0.4 98,452 + dcuC HEPCGN_00845 0.19 -1.3 98,452 + dcuC HEPCGN_00845 0.19 +0.1
Or see this region's nucleotide sequence