Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt repA and NIAGMN_28510 are separated by 75 nucleotides NIAGMN_28510 and xerD are separated by 89 nucleotides
NIAGMN_28505: repA - RepFIB replication protein A, at 124 to 1,101
repA
NIAGMN_28510: NIAGMN_28510 - hypothetical protein, at 1,177 to 1,296
_28510
NIAGMN_28515: xerD - recombinase, at 1,386 to 2,126
xerD
Position (kb) 1
2
3 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 0.410 kb on + strand, within repA at 0.410 kb on + strand, within repA at 0.410 kb on + strand, within repA at 0.410 kb on + strand, within repA at 0.410 kb on + strand, within repA at 0.410 kb on + strand, within repA at 0.464 kb on + strand, within repA at 0.577 kb on + strand, within repA at 0.577 kb on + strand, within repA at 0.577 kb on + strand, within repA at 0.578 kb on - strand, within repA at 0.593 kb on + strand, within repA at 0.593 kb on + strand, within repA at 0.604 kb on + strand, within repA at 0.605 kb on - strand, within repA at 0.605 kb on - strand, within repA at 0.607 kb on + strand, within repA at 0.607 kb on + strand, within repA at 0.607 kb on + strand, within repA at 0.608 kb on - strand, within repA at 0.624 kb on + strand, within repA at 0.635 kb on + strand, within repA at 0.664 kb on + strand, within repA at 0.705 kb on + strand, within repA at 0.743 kb on - strand, within repA at 0.743 kb on - strand, within repA at 0.743 kb on - strand, within repA at 0.750 kb on + strand, within repA at 0.750 kb on + strand, within repA at 0.751 kb on - strand, within repA at 0.751 kb on - strand, within repA at 0.752 kb on + strand, within repA at 0.753 kb on - strand, within repA at 0.753 kb on - strand, within repA at 0.884 kb on - strand, within repA at 0.892 kb on + strand, within repA at 0.893 kb on - strand, within repA at 0.893 kb on - strand, within repA at 0.953 kb on + strand, within repA at 0.953 kb on + strand, within repA at 0.975 kb on + strand, within repA at 1.105 kb on + strand at 1.105 kb on + strand at 1.105 kb on + strand at 1.106 kb on - strand at 1.106 kb on - strand at 1.135 kb on - strand at 1.148 kb on + strand at 1.149 kb on - strand at 1.149 kb on - strand at 1.149 kb on - strand at 1.150 kb on + strand at 1.154 kb on - strand at 1.188 kb on + strand at 1.189 kb on - strand, within NIAGMN_28510 at 1.190 kb on + strand, within NIAGMN_28510 at 1.191 kb on - strand, within NIAGMN_28510 at 1.216 kb on + strand, within NIAGMN_28510 at 1.217 kb on - strand, within NIAGMN_28510 at 1.217 kb on - strand, within NIAGMN_28510 at 1.243 kb on + strand, within NIAGMN_28510 at 1.243 kb on + strand, within NIAGMN_28510 at 1.244 kb on - strand, within NIAGMN_28510 at 1.244 kb on - strand, within NIAGMN_28510 at 1.290 kb on - strand at 1.290 kb on - strand at 1.290 kb on - strand at 1.302 kb on - strand at 1.302 kb on - strand at 1.315 kb on + strand at 1.315 kb on + strand at 1.315 kb on + strand at 1.316 kb on - strand at 1.316 kb on - strand at 1.316 kb on - strand at 1.319 kb on + strand at 1.319 kb on + strand at 1.333 kb on + strand at 1.333 kb on + strand at 1.333 kb on + strand at 1.334 kb on - strand at 1.334 kb on - strand at 1.338 kb on + strand at 1.338 kb on + strand at 1.339 kb on - strand at 1.339 kb on - strand at 1.339 kb on - strand at 1.363 kb on + strand at 1.363 kb on + strand at 1.364 kb on - strand at 1.364 kb on - strand at 1.365 kb on + strand at 1.366 kb on - strand at 1.367 kb on + strand at 1.367 kb on + strand at 1.368 kb on - strand at 1.368 kb on - strand at 1.368 kb on - strand at 1.368 kb on - strand at 1.379 kb on + strand at 1.380 kb on - strand at 1.406 kb on + strand at 1.407 kb on - strand at 1.407 kb on - strand at 1.491 kb on - strand, within xerD at 1.491 kb on - strand, within xerD at 1.491 kb on - strand, within xerD at 1.492 kb on + strand, within xerD at 1.492 kb on + strand, within xerD at 1.493 kb on - strand, within xerD at 1.493 kb on - strand, within xerD at 1.493 kb on - strand, within xerD at 1.561 kb on + strand, within xerD at 1.568 kb on + strand, within xerD at 1.568 kb on + strand, within xerD at 1.568 kb on + strand, within xerD at 1.568 kb on + strand, within xerD at 1.568 kb on + strand, within xerD at 1.568 kb on + strand, within xerD at 1.568 kb on + strand, within xerD at 1.568 kb on + strand, within xerD at 1.568 kb on + strand, within xerD at 1.568 kb on + strand, within xerD at 1.568 kb on + strand, within xerD at 1.569 kb on - strand, within xerD at 1.569 kb on - strand, within xerD at 1.569 kb on - strand, within xerD at 1.569 kb on - strand, within xerD at 1.569 kb on - strand, within xerD at 1.569 kb on - strand, within xerD at 1.569 kb on - strand, within xerD at 1.569 kb on - strand, within xerD at 1.569 kb on - strand, within xerD at 1.569 kb on - strand, within xerD at 1.569 kb on - strand, within xerD at 1.569 kb on - strand, within xerD at 1.577 kb on + strand, within xerD at 1.577 kb on + strand, within xerD at 1.578 kb on - strand, within xerD at 1.578 kb on - strand, within xerD at 1.578 kb on - strand, within xerD at 1.578 kb on - strand, within xerD at 1.579 kb on + strand, within xerD at 1.579 kb on + strand, within xerD at 1.579 kb on + strand, within xerD at 1.579 kb on + strand, within xerD at 1.579 kb on + strand, within xerD at 1.579 kb on + strand, within xerD at 1.579 kb on + strand, within xerD at 1.579 kb on + strand, within xerD at 1.579 kb on + strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.580 kb on - strand, within xerD at 1.623 kb on + strand, within xerD at 1.624 kb on - strand, within xerD at 1.753 kb on + strand, within xerD at 1.753 kb on + strand, within xerD at 1.754 kb on - strand, within xerD at 1.754 kb on - strand, within xerD at 1.754 kb on - strand, within xerD at 1.754 kb on - strand, within xerD at 1.754 kb on - strand, within xerD at 1.758 kb on + strand, within xerD at 1.758 kb on + strand, within xerD at 1.758 kb on + strand, within xerD at 1.758 kb on + strand, within xerD at 1.758 kb on + strand, within xerD at 1.758 kb on + strand, within xerD at 1.758 kb on + strand, within xerD at 1.758 kb on + strand, within xerD at 1.758 kb on + strand, within xerD at 1.759 kb on - strand, within xerD at 1.759 kb on - strand, within xerD at 1.759 kb on - strand, within xerD at 1.759 kb on - strand, within xerD at 1.759 kb on - strand, within xerD at 1.759 kb on - strand, within xerD at 1.759 kb on - strand, within xerD at 1.759 kb on - strand, within xerD at 1.759 kb on - strand, within xerD at 1.759 kb on - strand, within xerD at 1.759 kb on - strand, within xerD at 1.760 kb on + strand, within xerD at 1.902 kb on - strand, within xerD at 1.913 kb on + strand, within xerD at 1.937 kb on + strand, within xerD at 1.937 kb on + strand, within xerD at 1.937 kb on + strand, within xerD at 1.937 kb on + strand, within xerD at 1.937 kb on + strand, within xerD at 1.937 kb on + strand, within xerD at 1.937 kb on + strand, within xerD at 1.937 kb on + strand, within xerD at 1.937 kb on + strand, within xerD at 1.938 kb on - strand, within xerD at 1.938 kb on - strand, within xerD at 1.938 kb on - strand, within xerD at 1.938 kb on - strand, within xerD at 1.938 kb on - strand, within xerD at 1.959 kb on - strand, within xerD at 1.960 kb on + strand, within xerD at 1.960 kb on + strand, within xerD at 1.960 kb on + strand, within xerD at 1.960 kb on + strand, within xerD at 1.960 kb on + strand, within xerD at 1.960 kb on + strand, within xerD at 1.960 kb on + strand, within xerD at 1.960 kb on + strand, within xerD at 1.961 kb on - strand, within xerD at 1.961 kb on - strand, within xerD at 1.961 kb on - strand, within xerD at 1.961 kb on - strand, within xerD at 1.961 kb on - strand, within xerD at 2.171 kb on - strand at 2.171 kb on - strand at 2.171 kb on - strand at 2.206 kb on + strand at 2.397 kb on + strand at 2.397 kb on + strand at 2.397 kb on + strand at 2.397 kb on + strand at 2.432 kb on - strand at 2.447 kb on + strand at 2.448 kb on - strand at 2.448 kb on - strand at 2.460 kb on + strand at 2.585 kb on + strand at 2.713 kb on - strand at 2.771 kb on + strand at 2.922 kb on + strand at 3.068 kb on - strand at 3.091 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 410 + repA NIAGMN_28505 0.29 -1.8 410 + repA NIAGMN_28505 0.29 +1.1 410 + repA NIAGMN_28505 0.29 -1.3 410 + repA NIAGMN_28505 0.29 -0.0 410 + repA NIAGMN_28505 0.29 -2.9 410 + repA NIAGMN_28505 0.29 -0.5 464 + repA NIAGMN_28505 0.35 -0.7 577 + repA NIAGMN_28505 0.46 -2.9 577 + repA NIAGMN_28505 0.46 -1.0 577 + repA NIAGMN_28505 0.46 -2.9 578 - repA NIAGMN_28505 0.46 -1.4 593 + repA NIAGMN_28505 0.48 -0.2 593 + repA NIAGMN_28505 0.48 -1.7 604 + repA NIAGMN_28505 0.49 -1.0 605 - repA NIAGMN_28505 0.49 -0.9 605 - repA NIAGMN_28505 0.49 +0.8 607 + repA NIAGMN_28505 0.49 -0.3 607 + repA NIAGMN_28505 0.49 -1.2 607 + repA NIAGMN_28505 0.49 +2.0 608 - repA NIAGMN_28505 0.49 -1.4 624 + repA NIAGMN_28505 0.51 -0.7 635 + repA NIAGMN_28505 0.52 -1.5 664 + repA NIAGMN_28505 0.55 -0.3 705 + repA NIAGMN_28505 0.59 +0.8 743 - repA NIAGMN_28505 0.63 +0.2 743 - repA NIAGMN_28505 0.63 -0.2 743 - repA NIAGMN_28505 0.63 +1.2 750 + repA NIAGMN_28505 0.64 -0.9 750 + repA NIAGMN_28505 0.64 +2.2 751 - repA NIAGMN_28505 0.64 +3.4 751 - repA NIAGMN_28505 0.64 +0.7 752 + repA NIAGMN_28505 0.64 -0.1 753 - repA NIAGMN_28505 0.64 +4.0 753 - repA NIAGMN_28505 0.64 +0.8 884 - repA NIAGMN_28505 0.78 +3.1 892 + repA NIAGMN_28505 0.79 +2.3 893 - repA NIAGMN_28505 0.79 -0.4 893 - repA NIAGMN_28505 0.79 -2.7 953 + repA NIAGMN_28505 0.85 -0.5 953 + repA NIAGMN_28505 0.85 -0.7 975 + repA NIAGMN_28505 0.87 -0.2 1,105 + -0.5 1,105 + -1.9 1,105 + +1.1 1,106 - -0.4 1,106 - -2.3 1,135 - +0.7 1,148 + -0.5 1,149 - +0.0 1,149 - -0.5 1,149 - +0.4 1,150 + +0.5 1,154 - -2.6 1,188 + -2.0 1,189 - NIAGMN_28510 0.10 -0.4 1,190 + NIAGMN_28510 0.11 -1.4 1,191 - NIAGMN_28510 0.12 +1.6 1,216 + NIAGMN_28510 0.33 -3.8 1,217 - NIAGMN_28510 0.33 +0.3 1,217 - NIAGMN_28510 0.33 -0.5 1,243 + NIAGMN_28510 0.55 -1.8 1,243 + NIAGMN_28510 0.55 +0.9 1,244 - NIAGMN_28510 0.56 +0.5 1,244 - NIAGMN_28510 0.56 -0.2 1,290 - -2.0 1,290 - +1.0 1,290 - -0.2 1,302 - +0.4 1,302 - -0.0 1,315 + +0.7 1,315 + -0.7 1,315 + -0.7 1,316 - +0.5 1,316 - +0.7 1,316 - +3.2 1,319 + +1.6 1,319 + -0.8 1,333 + -0.2 1,333 + -1.2 1,333 + +0.2 1,334 - -0.3 1,334 - +0.2 1,338 + +0.5 1,338 + +0.0 1,339 - -2.3 1,339 - -2.3 1,339 - -0.5 1,363 + +0.1 1,363 + +2.9 1,364 - -1.8 1,364 - +1.5 1,365 + +1.0 1,366 - +0.6 1,367 + -0.5 1,367 + -0.7 1,368 - -0.2 1,368 - -1.4 1,368 - -2.5 1,368 - -0.3 1,379 + +3.4 1,380 - -0.9 1,406 + -1.3 1,407 - +0.3 1,407 - -0.2 1,491 - xerD NIAGMN_28515 0.14 -1.4 1,491 - xerD NIAGMN_28515 0.14 -1.6 1,491 - xerD NIAGMN_28515 0.14 -1.7 1,492 + xerD NIAGMN_28515 0.14 -0.1 1,492 + xerD NIAGMN_28515 0.14 -0.3 1,493 - xerD NIAGMN_28515 0.14 -0.8 1,493 - xerD NIAGMN_28515 0.14 +0.3 1,493 - xerD NIAGMN_28515 0.14 +0.5 1,561 + xerD NIAGMN_28515 0.24 +0.1 1,568 + xerD NIAGMN_28515 0.25 -1.2 1,568 + xerD NIAGMN_28515 0.25 +0.3 1,568 + xerD NIAGMN_28515 0.25 +4.0 1,568 + xerD NIAGMN_28515 0.25 -0.7 1,568 + xerD NIAGMN_28515 0.25 +1.0 1,568 + xerD NIAGMN_28515 0.25 -0.4 1,568 + xerD NIAGMN_28515 0.25 +0.4 1,568 + xerD NIAGMN_28515 0.25 +0.7 1,568 + xerD NIAGMN_28515 0.25 +1.1 1,568 + xerD NIAGMN_28515 0.25 +2.8 1,568 + xerD NIAGMN_28515 0.25 +0.4 1,569 - xerD NIAGMN_28515 0.25 -2.4 1,569 - xerD NIAGMN_28515 0.25 +1.9 1,569 - xerD NIAGMN_28515 0.25 -3.0 1,569 - xerD NIAGMN_28515 0.25 +0.2 1,569 - xerD NIAGMN_28515 0.25 -3.9 1,569 - xerD NIAGMN_28515 0.25 -0.9 1,569 - xerD NIAGMN_28515 0.25 -2.0 1,569 - xerD NIAGMN_28515 0.25 -0.9 1,569 - xerD NIAGMN_28515 0.25 +1.1 1,569 - xerD NIAGMN_28515 0.25 -0.3 1,569 - xerD NIAGMN_28515 0.25 +1.2 1,569 - xerD NIAGMN_28515 0.25 +0.5 1,577 + xerD NIAGMN_28515 0.26 +0.6 1,577 + xerD NIAGMN_28515 0.26 +1.2 1,578 - xerD NIAGMN_28515 0.26 +0.4 1,578 - xerD NIAGMN_28515 0.26 -0.6 1,578 - xerD NIAGMN_28515 0.26 +0.1 1,578 - xerD NIAGMN_28515 0.26 -2.2 1,579 + xerD NIAGMN_28515 0.26 -0.0 1,579 + xerD NIAGMN_28515 0.26 +1.5 1,579 + xerD NIAGMN_28515 0.26 -2.0 1,579 + xerD NIAGMN_28515 0.26 +2.5 1,579 + xerD NIAGMN_28515 0.26 +0.4 1,579 + xerD NIAGMN_28515 0.26 -3.1 1,579 + xerD NIAGMN_28515 0.26 -2.4 1,579 + xerD NIAGMN_28515 0.26 -2.6 1,579 + xerD NIAGMN_28515 0.26 +0.1 1,580 - xerD NIAGMN_28515 0.26 -1.1 1,580 - xerD NIAGMN_28515 0.26 -1.2 1,580 - xerD NIAGMN_28515 0.26 +3.8 1,580 - xerD NIAGMN_28515 0.26 -0.4 1,580 - xerD NIAGMN_28515 0.26 +0.6 1,580 - xerD NIAGMN_28515 0.26 -2.7 1,580 - xerD NIAGMN_28515 0.26 +1.4 1,580 - xerD NIAGMN_28515 0.26 -2.2 1,580 - xerD NIAGMN_28515 0.26 +2.1 1,580 - xerD NIAGMN_28515 0.26 +0.6 1,580 - xerD NIAGMN_28515 0.26 +1.0 1,580 - xerD NIAGMN_28515 0.26 -3.1 1,580 - xerD NIAGMN_28515 0.26 -1.0 1,580 - xerD NIAGMN_28515 0.26 -0.4 1,580 - xerD NIAGMN_28515 0.26 +3.0 1,580 - xerD NIAGMN_28515 0.26 -1.3 1,580 - xerD NIAGMN_28515 0.26 -0.5 1,580 - xerD NIAGMN_28515 0.26 +0.8 1,580 - xerD NIAGMN_28515 0.26 -0.5 1,623 + xerD NIAGMN_28515 0.32 -2.7 1,624 - xerD NIAGMN_28515 0.32 -0.4 1,753 + xerD NIAGMN_28515 0.50 -0.0 1,753 + xerD NIAGMN_28515 0.50 -0.9 1,754 - xerD NIAGMN_28515 0.50 +0.7 1,754 - xerD NIAGMN_28515 0.50 +1.2 1,754 - xerD NIAGMN_28515 0.50 +0.5 1,754 - xerD NIAGMN_28515 0.50 +1.0 1,754 - xerD NIAGMN_28515 0.50 -1.6 1,758 + xerD NIAGMN_28515 0.50 +2.5 1,758 + xerD NIAGMN_28515 0.50 +2.9 1,758 + xerD NIAGMN_28515 0.50 +3.1 1,758 + xerD NIAGMN_28515 0.50 -1.3 1,758 + xerD NIAGMN_28515 0.50 +1.4 1,758 + xerD NIAGMN_28515 0.50 -2.4 1,758 + xerD NIAGMN_28515 0.50 -0.0 1,758 + xerD NIAGMN_28515 0.50 +1.0 1,758 + xerD NIAGMN_28515 0.50 -0.6 1,759 - xerD NIAGMN_28515 0.50 +0.7 1,759 - xerD NIAGMN_28515 0.50 -1.9 1,759 - xerD NIAGMN_28515 0.50 +0.2 1,759 - xerD NIAGMN_28515 0.50 -1.3 1,759 - xerD NIAGMN_28515 0.50 -1.1 1,759 - xerD NIAGMN_28515 0.50 +0.5 1,759 - xerD NIAGMN_28515 0.50 -1.4 1,759 - xerD NIAGMN_28515 0.50 +3.0 1,759 - xerD NIAGMN_28515 0.50 +1.0 1,759 - xerD NIAGMN_28515 0.50 +0.1 1,759 - xerD NIAGMN_28515 0.50 -0.7 1,760 + xerD NIAGMN_28515 0.50 +0.7 1,902 - xerD NIAGMN_28515 0.70 -1.1 1,913 + xerD NIAGMN_28515 0.71 -0.3 1,937 + xerD NIAGMN_28515 0.74 +1.8 1,937 + xerD NIAGMN_28515 0.74 +0.7 1,937 + xerD NIAGMN_28515 0.74 +1.3 1,937 + xerD NIAGMN_28515 0.74 +0.4 1,937 + xerD NIAGMN_28515 0.74 +2.1 1,937 + xerD NIAGMN_28515 0.74 +0.8 1,937 + xerD NIAGMN_28515 0.74 -0.2 1,937 + xerD NIAGMN_28515 0.74 +0.5 1,937 + xerD NIAGMN_28515 0.74 +0.7 1,938 - xerD NIAGMN_28515 0.74 -0.6 1,938 - xerD NIAGMN_28515 0.74 +0.2 1,938 - xerD NIAGMN_28515 0.74 +2.2 1,938 - xerD NIAGMN_28515 0.74 -1.6 1,938 - xerD NIAGMN_28515 0.74 +0.3 1,959 - xerD NIAGMN_28515 0.77 -2.9 1,960 + xerD NIAGMN_28515 0.77 -1.9 1,960 + xerD NIAGMN_28515 0.77 +0.1 1,960 + xerD NIAGMN_28515 0.77 -1.9 1,960 + xerD NIAGMN_28515 0.77 +1.3 1,960 + xerD NIAGMN_28515 0.77 -0.8 1,960 + xerD NIAGMN_28515 0.77 -3.0 1,960 + xerD NIAGMN_28515 0.77 -3.3 1,960 + xerD NIAGMN_28515 0.77 +0.8 1,961 - xerD NIAGMN_28515 0.78 +3.2 1,961 - xerD NIAGMN_28515 0.78 +3.8 1,961 - xerD NIAGMN_28515 0.78 +1.1 1,961 - xerD NIAGMN_28515 0.78 -2.9 1,961 - xerD NIAGMN_28515 0.78 -1.7 2,171 - -0.0 2,171 - -0.2 2,171 - +0.3 2,206 + +0.5 2,397 + +1.0 2,397 + -1.4 2,397 + +1.1 2,397 + +0.5 2,432 - +1.3 2,447 + +2.0 2,448 - -1.2 2,448 - +1.9 2,460 + +2.1 2,585 + -0.3 2,713 - -0.4 2,771 + +1.0 2,922 + -1.5 3,068 - +0.1 3,091 + -1.9
Or see this region's nucleotide sequence