Strain Fitness in Escherichia coli ECRC102 around NIAGMN_28030

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_28020 and tnp-IS3 are separated by 83 nucleotidestnp-IS3 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and hipB are separated by 173 nucleotides NIAGMN_28020: NIAGMN_28020 - autotransporter outer membrane beta-barrel domain-containing protein, at 5,428,396 to 5,429,106 _28020 NIAGMN_28025: tnp-IS3 - IS3 family transposase, at 5,429,190 to 5,430,077 tnp-IS3 NIAGMN_28030: tnp-IS3 - IS3 family transposase, at 5,430,077 to 5,430,403 tnp-IS3 NIAGMN_28035: hipB - transcriptional regulator, at 5,430,577 to 5,431,161 hipB Position (kb) 5430 5431Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5430.531 kb on - strandat 5430.608 kb on + strandat 5430.609 kb on - strandat 5430.961 kb on - strand, within hipBat 5430.961 kb on - strand, within hipBat 5431.354 kb on + strandat 5431.388 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,430,531 - +2.2
5,430,608 + -2.8
5,430,609 - +0.6
5,430,961 - hipB NIAGMN_28035 0.66 +1.4
5,430,961 - hipB NIAGMN_28035 0.66 +0.2
5,431,354 + -2.0
5,431,388 + +0.1

Or see this region's nucleotide sequence